genome.fa.s7.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  2  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385171--385816	98	6.6	98	88	0	896	36	17	25	19	1.94
386145--386223	40	2.0	39	95	2	140	29	30	16	24	1.96
392798--393020	59	3.8	57	83	5	295	37	2	27	32	1.71
392870--393029	29	5.5	29	70	16	125	35	2	28	33	1.71
392803--393025	116	1.9	115	89	2	349	39	2	26	31	1.70
392986--393093	29	3.7	29	78	16	100	36	3	20	39	1.70
395566--395607	14	3.1	14	80	6	52	83	0	9	7	0.81
396742--397256	49	10.5	49	70	7	328	37	18	26	17	1.93
396742--397293	98	5.6	98	86	0	762	36	19	26	17	1.94
398305--398383	28	2.7	31	72	20	78	41	3	20	34	1.70
400304--400336	12	2.8	12	86	4	50	39	0	3	57	1.14
400332--400371	17	2.4	17	95	0	71	55	2	0	42	1.13
400725--401016	134	2.2	135	92	1	480	21	25	17	34	1.95
400860--401509	205	3.2	205	91	0	1041	21	23	20	35	1.96
401552--401772	78	2.8	78	84	1	264	27	20	26	25	1.99
401663--401791	39	3.3	39	71	8	109	27	22	27	21	1.99
401627--401789	78	2.1	78	89	0	245	27	21	28	22	1.99
402121--402308	50	3.7	50	70	10	159	12	26	22	38	1.89
402094--402359	101	2.6	96	79	10	282	12	26	21	39	1.89
404427--404465	12	3.2	12	81	0	51	48	0	28	23	1.51
406000--406059	6	9.5	6	81	13	68	1	13	3	81	0.89
405999--406059	11	5.5	11	73	11	52	1	14	3	80	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412024--412070	6	7.5	6	83	9	58	2	14	0	82	0.75
413172--413204	12	2.8	12	86	4	50	39	0	3	57	1.14
413518--413596	40	2.0	39	95	2	140	30	29	16	24	1.96
414042--414096	21	2.6	21	77	11	58	72	5	0	21	1.04
414160--414228	35	2.0	35	83	11	88	46	39	1	13	1.52
415830--415873	20	2.2	20	88	8	63	20	0	6	72	1.07
433443--433480	19	2.0	19	89	0	58	73	7	5	13	1.22
433808--433876	24	2.9	23	89	4	93	44	14	26	14	1.83
433811--433876	23	2.8	24	86	4	89	46	15	25	12	1.80
435224--435272	2	24.5	2	100	0	98	51	0	0	48	1.00
435997--436044	13	3.6	13	76	15	53	37	27	22	12	1.90
435992--436032	14	3.0	14	75	17	50	41	26	17	14	1.88
435988--436049	27	2.3	27	91	0	106	35	27	17	19	1.94
436337--436385	25	2.0	24	88	4	71	40	24	8	26	1.83
437520--437583	33	2.0	33	81	9	78	21	12	3	62	1.43
437862--438059	58	3.4	59	80	10	210	32	29	3	34	1.75
440464--440518	21	2.6	21	91	0	83	32	21	16	29	1.95
450008--450052	22	2.0	23	91	4	74	48	0	0	51	1.00
450038--450086	20	2.6	19	81	12	66	44	2	4	48	1.33
450075--450252	35	5.3	35	73	13	131	44	2	5	47	1.39
450062--450282	97	2.3	97	89	2	338	45	2	4	47	1.34
450151--450183	17	1.9	17	93	0	57	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450232--450281	21	2.3	23	80	16	63	50	0	0	50	1.00
454795--454875	29	2.7	30	76	5	83	46	16	7	29	1.73
467335--467622	145	2.0	145	95	0	522	34	12	14	37	1.85
471896--471920	13	1.9	13	100	0	50	76	0	24	0	0.80
471899--471945	24	2.0	24	86	0	67	65	0	31	2	1.04
471897--471949	20	2.8	20	83	8	67	64	0	33	1	1.05
475274--475365	45	2.0	45	93	0	157	21	18	27	32	1.97
477206--477300	30	3.2	30	71	14	97	44	12	6	36	1.68
480793--480843	22	2.4	21	75	12	50	66	7	0	25	1.18
481076--481127	14	3.6	14	89	5	77	3	34	0	61	1.14
486118--486249	65	2.0	64	95	1	237	31	21	23	24	1.98
486473--486568	48	1.9	52	83	12	130	44	2	0	53	1.12
486643--486676	17	2.0	17	88	0	50	64	0	35	0	0.94
490838--490899	31	2.0	31	87	0	88	38	12	12	35	1.82
491591--491648	28	2.1	28	86	0	80	39	8	1	50	1.43
492068--492100	16	2.0	17	88	5	50	48	0	0	51	1.00
493666--493721	29	2.0	29	82	3	69	28	5	23	42	1.76
493883--494136	140	1.8	139	88	3	386	25	10	13	50	1.74
494986--495010	1	25.0	1	100	0	50	100	0	0	0	0.00
498158--498224	31	2.2	30	84	5	82	43	13	10	32	1.78
501220--501254	17	2.1	17	88	0	52	65	2	0	31	1.07
504867--504925	20	3.0	20	82	9	84	47	10	22	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505317--505354	18	2.1	19	85	5	51	44	7	7	39	1.63
507174--507299	30	4.3	30	87	1	157	37	25	1	35	1.66
507171--507346	30	5.9	29	81	7	149	36	26	1	35	1.67
509924--509984	29	2.1	29	93	0	104	27	24	19	27	1.99
511992--512032	18	2.2	19	86	4	57	80	0	14	4	0.87
512889--512929	9	4.7	9	82	11	50	80	0	12	7	0.90
512889--512965	22	3.3	22	82	10	75	80	0	14	5	0.87
512900--512965	16	4.5	15	77	19	59	80	0	15	4	0.87
512898--512965	7	9.3	7	76	17	59	80	0	14	4	0.85
512892--512960	8	8.4	8	82	9	50	81	0	13	5	0.87
512898--512965	15	4.6	14	75	20	59	80	0	14	4	0.85
514283--514433	40	3.7	39	85	9	187	31	23	15	29	1.95
514283--514433	81	1.8	83	87	5	227	31	23	15	29	1.95
514282--514472	41	4.6	41	84	3	222	32	25	15	27	1.95
514286--514472	83	2.3	83	82	5	209	32	25	15	26	1.95
514452--514578	42	2.9	43	79	11	141	26	28	16	28	1.97
514452--514610	42	3.8	42	78	9	137	26	27	16	29	1.97
514494--514619	39	3.2	39	78	5	128	26	27	15	30	1.96
514624--515477	208	4.1	208	86	1	1140	37	16	21	24	1.94
515419--515558	48	2.9	48	76	4	147	38	15	22	23	1.92
515590--515684	48	2.0	48	83	4	120	36	17	23	22	1.95
515469--515797	123	2.7	122	84	3	383	38	16	21	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515592--516575	208	4.7	208	88	2	1375	37	17	21	23	1.94
515923--516090	85	2.0	85	84	2	221	38	17	20	23	1.93
516216--516307	48	1.9	48	84	4	123	34	14	26	25	1.93
516345--516505	85	1.9	85	83	5	209	38	13	24	24	1.90
518285--518439	30	5.2	30	83	2	197	35	22	2	39	1.68
518285--518434	59	2.5	59	84	6	196	34	22	2	40	1.68
518285--518468	30	6.2	29	83	3	109	35	23	3	36	1.73
518285--518473	59	3.2	57	77	7	182	34	23	3	38	1.73
518285--518449	89	1.9	89	87	1	242	36	23	2	38	1.68
518327--518532	29	7.0	30	75	8	95	34	24	3	37	1.72
519022--519069	25	1.9	25	87	8	71	56	2	4	37	1.30
520001--520073	31	2.4	30	81	4	92	32	9	12	45	1.74
527036--527157	6	21.0	6	73	12	94	45	2	0	50	1.20
527036--527136	17	5.4	17	76	17	85	42	2	0	53	1.22
527036--527122	41	2.1	41	91	0	138	42	3	0	54	1.17
527055--527156	17	5.9	17	78	12	100	46	1	0	50	1.19
527542--527599	29	2.0	29	83	6	73	50	20	8	20	1.75
529054--529506	29	15.4	29	67	22	225	31	30	3	34	1.74
529047--529557	59	8.7	59	87	2	670	31	30	3	34	1.75
535280--535393	50	2.3	51	80	4	124	34	13	5	47	1.65
535661--535718	17	3.6	17	70	13	59	20	34	1	43	1.62
540537--540584	24	2.0	24	87	0	69	18	37	2	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
541197--541239	20	2.2	20	91	4	70	53	6	4	34	1.49
544189--545102	461	2.0	454	84	5	1203	39	14	13	33	1.84
546370--546394	13	1.9	13	100	0	50	0	0	88	12	0.53
550173--550668	171	2.9	170	84	4	572	44	12	9	33	1.74
556642--556751	37	3.0	37	89	2	168	42	28	16	12	1.84
556607--556751	74	2.0	73	83	6	186	40	29	16	13	1.86
556684--556748	16	3.8	16	71	25	60	41	26	16	15	1.88
559066--559115	25	2.0	26	88	4	75	46	0	4	50	1.20
559285--559369	43	2.0	44	83	2	109	25	4	12	56	1.56
559480--559540	31	2.0	31	93	3	106	36	14	11	37	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144