genome.fa.s7.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  136  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34861036--34861093	26	2.2	26	84	0	71	55	5	29	10	1.55
34863841--34863898	28	2.1	28	83	6	73	36	1	12	50	1.50
34863890--34863939	26	1.9	26	84	8	66	30	0	12	58	1.34
34864005--34864039	6	5.8	6	100	0	70	65	17	0	17	1.27
34864472--34864514	6	7.2	6	94	0	77	16	30	34	18	1.93
34866216--34866271	25	2.2	26	81	15	64	42	3	3	50	1.37
34866450--34866481	16	2.1	16	94	5	57	59	0	0	40	0.97
34867867--34867948	30	2.7	31	81	7	98	43	19	13	23	1.86
34870072--34870219	69	2.2	66	86	9	199	12	22	20	43	1.86
34870050--34870170	23	5.3	23	88	2	163	11	23	22	42	1.86
34871050--34871121	31	2.4	31	80	2	83	18	9	20	51	1.74
34874667--34874971	61	5.1	60	76	11	250	28	17	15	38	1.90
34877738--34877819	23	3.6	23	88	3	85	14	23	19	42	1.88
34877759--34877906	46	3.2	45	76	11	142	13	21	20	44	1.85
34877759--34877895	23	5.9	23	74	12	120	13	21	19	45	1.85
34878902--34879208	56	5.3	56	74	16	234	35	14	19	31	1.91
34878901--34879114	61	3.7	58	82	9	258	34	14	21	29	1.93
34878903--34879198	115	2.5	116	83	6	359	35	14	19	30	1.92
34879384--34879447	31	2.1	31	84	0	83	51	3	4	40	1.38
34879547--34879775	110	2.1	110	89	1	343	26	18	22	32	1.97
34882016--34882087	29	2.7	26	75	14	67	56	1	2	38	1.22
34886411--34886445	19	1.9	19	88	11	56	60	5	2	31	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34901980--34902004	3	8.3	3	100	0	50	32	0	0	68	0.90
34908665--34908731	32	2.1	32	86	8	91	34	4	5	55	1.45
34911184--34911579	193	2.1	193	99	0	785	39	8	6	44	1.62
34915562--34915599	12	3.2	12	92	0	58	0	13	65	21	1.26
34915562--34915599	18	2.1	18	90	0	58	0	13	65	21	1.26
34931266--34931711	195	2.3	197	84	6	555	28	20	26	24	1.99
34932467--34932515	21	2.3	21	86	13	66	24	12	26	36	1.91
34937651--34937689	13	3.2	12	89	7	53	48	5	0	46	1.24
34938403--34938461	25	2.4	24	83	5	82	69	3	0	27	1.04
34939602--34939672	29	2.4	30	88	4	99	50	12	11	25	1.73
34949405--34949444	20	2.0	20	85	9	55	50	2	2	45	1.28
34975561--34975658	31	3.3	30	71	22	91	23	14	13	48	1.78
34975561--34975753	59	3.3	58	86	2	251	23	17	13	45	1.84
34976231--34976268	20	1.9	20	88	0	58	57	7	7	26	1.54
34978614--34978658	22	2.0	23	82	8	56	75	8	0	15	1.03
34996501--34996539	19	2.1	19	85	4	53	30	2	5	61	1.31
34996466--34996538	33	2.1	35	82	12	89	38	1	4	56	1.27
35016145--35016195	20	2.5	21	96	3	95	50	0	0	49	1.00
35016218--35016248	14	2.1	15	94	5	55	0	54	0	45	0.99
35016369--35016402	15	2.3	15	89	0	50	8	26	0	64	1.22
35017039--35017186	69	2.2	66	83	11	174	44	20	22	11	1.84
35017086--35017189	23	4.5	23	85	2	129	44	23	22	10	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35018895--35018936	19	2.5	16	85	14	50	26	16	30	26	1.97
35019352--35019402	25	2.0	25	92	0	84	49	15	23	11	1.78
35019418--35019515	9	10.2	9	70	27	53	48	0	0	51	1.00
35019416--35019512	28	3.7	27	84	16	141	49	0	0	50	1.00
35019414--35019523	11	9.1	11	72	24	80	48	0	0	50	1.07
35019406--35019523	50	2.4	48	89	6	184	49	0	0	50	1.06
35019868--35019913	22	2.0	23	87	4	67	36	0	0	63	0.95
35028132--35028215	30	2.8	29	76	8	71	39	8	5	46	1.58
35035743--35035822	21	3.5	20	72	27	70	51	0	0	48	1.00
35035745--35035832	29	3.3	29	66	28	79	51	0	0	48	1.00
35035738--35035831	49	1.9	48	91	6	154	51	0	0	48	1.00
35036774--35036837	20	3.5	19	74	24	66	50	1	0	48	1.10
35036774--35036846	31	2.2	34	88	7	107	49	2	0	47	1.15
35040392--35040435	14	3.2	14	80	6	63	56	6	0	36	1.26
35045270--35045296	13	2.1	13	100	0	54	7	14	37	40	1.74
35048581--35048651	37	1.9	37	94	0	124	53	2	14	29	1.55
35048856--35048912	14	4.3	13	73	10	53	47	8	5	38	1.57
35051697--35051728	8	4.0	8	100	0	64	25	0	0	75	0.81
35067963--35068037	21	3.4	21	70	25	73	64	2	10	22	1.38
35067964--35068039	25	3.2	25	63	14	70	63	2	11	22	1.40
35067963--35068063	46	2.2	46	96	1	184	65	1	9	22	1.33
35067963--35068053	21	4.1	22	70	13	71	63	2	10	23	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35091476--35091519	23	2.0	22	82	8	54	38	4	6	50	1.50
35111483--35111669	92	2.0	93	89	1	286	47	10	1	40	1.48
35113414--35113454	18	2.3	18	86	0	55	34	19	14	31	1.92
35130934--35130958	3	8.3	3	100	0	50	64	0	36	0	0.94
35137921--35137962	22	1.9	22	85	9	59	19	4	4	71	1.22
35142646--35142694	25	2.0	24	84	7	64	61	10	2	26	1.39
35143031--35143062	14	2.3	14	100	0	64	18	9	0	71	1.12
35148230--35148467	41	5.8	41	82	0	271	28	22	31	17	1.97
35149845--35150007	41	3.9	41	81	5	184	27	17	25	28	1.98
35149840--35150007	43	4.0	43	82	5	200	27	17	25	29	1.97
35149850--35150007	84	1.9	84	86	4	228	27	17	25	29	1.97
35150051--35150089	20	1.9	20	84	5	51	10	17	25	46	1.80
35152593--35152642	2	25.0	2	100	0	100	50	0	0	50	1.00
35156819--35156887	7	9.3	7	73	20	52	69	4	1	24	1.15
35156819--35156887	15	4.6	14	74	16	59	69	4	1	24	1.15
35157699--35157752	25	2.1	25	82	6	63	37	0	1	61	1.07
35165776--35165806	13	2.5	13	94	5	55	25	12	0	61	1.32
35165775--35165830	13	4.3	13	77	6	51	33	16	0	50	1.45
35167605--35167669	33	2.0	31	85	5	85	36	0	0	63	0.95
35176087--35176131	21	2.1	21	83	0	54	60	2	0	37	1.09
35191720--35191789	32	2.2	32	87	7	99	42	12	10	34	1.77
35202258--35202311	25	2.2	25	100	0	108	35	3	9	51	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35205011--35205078	28	2.3	29	90	7	102	52	0	1	45	1.09
35205049--35205097	22	2.2	23	85	3	64	57	0	0	42	0.99
35217269--35217628	117	3.1	116	92	2	580	35	10	11	42	1.75
35251190--35251218	3	10.0	3	92	7	51	31	0	0	68	0.89
35251319--35251375	19	2.9	19	84	5	69	77	0	19	3	0.92
35251318--35251365	9	5.1	9	80	16	53	77	0	18	4	0.93
35251629--35251687	31	2.0	30	83	6	75	35	3	10	50	1.53
35251762--35251809	25	1.9	25	87	8	71	47	2	4	45	1.33
35251822--35251880	31	2.0	29	83	6	73	47	8	3	40	1.51
35252118--35252182	33	2.0	32	82	8	78	60	7	0	32	1.25
35254349--35254450	52	2.0	51	86	5	143	35	23	10	30	1.89
35256048--35256089	21	2.0	20	86	4	57	71	14	0	14	1.15
35256065--35256166	12	8.6	12	68	9	57	67	20	5	5	1.33
35256160--35256238	22	3.6	22	73	19	83	67	17	5	10	1.38
35256116--35256204	35	2.5	35	81	3	99	68	19	5	6	1.33
35256107--35256234	44	2.8	44	83	3	139	67	20	5	7	1.35
35256710--35256750	18	2.3	18	83	4	57	70	2	0	26	0.99
35257047--35257495	222	2.0	222	97	0	853	34	14	11	40	1.81
35265852--35265913	2	31.0	2	100	0	124	50	0	0	50	1.00
35280765--35280825	29	2.1	31	81	9	74	27	14	9	47	1.76
35281659--35281723	30	2.1	31	85	2	87	24	3	18	53	1.58
35283884--35283909	6	4.3	6	100	0	52	0	0	30	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35291425--35291449	1	25.0	1	100	0	50	0	0	100	0	0.00
35294785--35294823	18	2.2	18	90	0	60	66	0	0	33	0.92
35296702--35297076	124	3.0	124	100	0	750	38	15	10	36	1.82
35301459--35301672	88	2.4	86	80	7	225	40	23	5	30	1.77
35307274--35307494	110	2.1	105	87	7	311	21	10	21	46	1.82
35314494--35314872	66	5.7	66	88	2	548	41	12	22	22	1.87
35314935--35315071	66	2.1	66	86	2	186	43	15	19	21	1.87
35314745--35315113	174	2.1	174	83	2	463	39	15	21	22	1.91
35315057--35315114	21	2.8	21	81	0	71	32	13	25	27	1.94
35315860--35315982	33	3.7	33	92	0	210	44	13	13	27	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144