genome.fa.s7.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  58  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12048332--12048415	33	2.5	33	84	7	98	17	35	27	19	1.94
12048258--12048472	119	1.8	119	93	2	378	19	36	25	19	1.95
12048254--12048501	119	2.1	120	88	8	373	19	35	25	19	1.96
12048160--12048582	205	2.1	205	89	2	652	19	34	25	20	1.96
12048491--12048911	215	2.0	215	88	2	632	19	35	24	20	1.96
12048395--12049439	43	24.3	43	64	17	280	20	34	24	20	1.96
12049578--12049620	20	2.2	20	86	0	59	58	0	2	39	1.11
12049713--12049740	3	9.3	3	100	0	56	64	0	0	35	0.94
12053295--12068600	345	44.3	347	97	1	29000	25	18	22	33	1.96
12068308--12068900	299	2.0	299	98	1	1154	24	18	22	34	1.96
12068606--12076229	346	22.0	347	95	2	13816	26	18	21	33	1.96
12084912--12084956	16	3.0	16	78	18	60	31	24	26	17	1.97
12084910--12084953	13	3.2	13	79	17	52	31	27	27	13	1.94
12090926--12091970	43	24.5	43	78	8	868	22	32	26	18	1.97
12091199--12091355	78	2.0	78	88	4	237	20	32	28	19	1.97
12091510--12091823	128	2.4	129	80	5	325	20	32	25	21	1.98
12091946--12091994	24	2.0	24	84	0	62	30	36	20	12	1.89
12092040--12092315	43	6.4	43	79	2	266	21	28	30	19	1.98
12092040--12092315	86	3.2	86	80	1	302	21	28	30	19	1.98
12091643--12092295	325	2.0	325	92	0	1092	23	31	27	18	1.97
12092958--12094465	86	17.6	85	85	3	1779	20	33	24	21	1.97
12092958--12101657	258	33.9	258	79	6	7565	21	32	24	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12092956--12094702	43	40.7	43	66	12	671	21	32	24	21	1.98
12094253--12094701	128	3.5	129	77	7	383	22	32	27	18	1.96
12094331--12094701	130	2.9	127	80	7	374	22	32	28	17	1.96
12095338--12101657	86	73.5	86	86	1	8030	20	33	24	21	1.97
12095373--12102535	43	166.6	42	64	16	1453	20	33	23	22	1.97
12092956--12101657	172	50.8	170	80	5	8226	21	32	24	21	1.98
12104373--12104521	23	6.4	24	88	6	148	11	22	22	43	1.85
12104394--12104520	46	2.7	46	91	2	200	11	21	22	44	1.85
12104373--12104566	69	2.8	68	83	10	214	11	23	21	42	1.86
12111027--12111198	23	7.4	23	83	8	190	12	22	21	43	1.85
12111746--12119526	86	90.7	86	80	5	4891	20	33	23	22	1.97
12111988--12112131	43	3.3	43	66	11	114	15	35	23	25	1.94
12112108--12112246	69	2.0	69	91	0	224	20	35	23	20	1.96
12112305--12119504	43	167.4	42	62	15	936	20	33	23	22	1.97
12121167--12121794	43	14.4	43	77	6	514	21	31	26	19	1.97
12122427--12123387	86	11.2	86	83	2	1070	21	33	23	21	1.97
12131132--12132329	43	28.4	43	71	12	574	21	31	27	19	1.98
12131328--12131441	35	3.0	36	79	10	113	19	32	29	18	1.96
12131329--12131484	78	2.0	78	85	0	213	19	30	31	18	1.96
12131243--12131542	164	1.8	164	81	2	379	21	30	29	18	1.97
12133014--12133252	76	3.0	76	80	13	252	21	34	25	19	1.96
12133090--12133270	86	2.1	86	87	4	267	21	33	24	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12133222--12133321	43	2.3	43	82	3	130	22	34	26	18	1.96
12133262--12133923	86	7.7	87	79	6	586	20	33	22	23	1.98
12133090--12134237	215	5.3	215	71	10	576	21	32	23	22	1.98
12133135--12133404	129	2.1	129	84	5	359	21	32	24	21	1.97
12133274--12133923	172	3.8	172	82	2	759	21	33	22	23	1.97
12133275--12133923	258	2.5	257	86	0	911	21	33	22	23	1.98
12133908--12134133	85	2.6	86	84	5	305	19	33	24	22	1.97
12133866--12134482	43	14.4	43	70	14	196	22	31	25	20	1.98
12133999--12134244	128	1.9	128	82	3	307	21	31	25	21	1.98
12134002--12134283	128	2.2	128	79	7	297	22	31	25	20	1.98
12133734--12134474	214	3.5	214	79	6	612	21	31	25	21	1.98
12134199--12134482	86	3.3	85	78	6	288	23	30	27	17	1.97
12135699--12135822	43	2.9	44	69	17	116	20	35	24	20	1.96
12144505--12145270	43	17.9	43	76	7	637	23	33	25	18	1.97
12145114--12145359	129	1.9	129	85	1	341	24	33	21	20	1.97
12145255--12146942	86	19.4	86	78	8	824	21	32	23	22	1.98
12145083--12145375	129	2.3	129	82	3	340	23	33	21	21	1.97
12145361--12145495	43	3.1	43	71	12	141	20	29	27	22	1.98
12145433--12145548	53	2.2	53	92	1	189	16	30	25	27	1.97
12145490--12145643	43	3.6	42	71	16	118	19	34	23	22	1.97
12145347--12145640	139	2.1	139	86	5	409	19	31	25	23	1.98
12145840--12146664	43	19.2	43	63	20	161	21	33	23	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12145765--12146942	172	6.8	171	83	4	1370	21	33	23	22	1.97
12146806--12146985	43	4.2	43	69	12	127	22	30	23	23	1.99
12147015--12149833	86	32.8	86	81	5	2685	20	32	23	22	1.98
12147282--12147425	43	3.3	43	67	19	120	18	33	26	22	1.96
12146968--12149833	258	11.1	257	81	4	3077	20	32	23	22	1.98
12149525--12149876	43	8.2	43	66	16	174	22	31	23	23	1.99
12149906--12154951	86	58.8	86	81	1	5253	21	32	23	22	1.98
12150250--12150402	43	3.6	43	67	16	109	18	28	25	27	1.98
12150636--12150770	43	3.1	43	68	12	123	24	32	20	22	1.98
12150852--12150984	43	3.1	43	64	12	101	21	29	24	25	1.99
12155024--12157561	86	29.8	86	81	2	2621	21	33	22	22	1.98
12165263--12165906	43	14.9	43	72	5	375	23	30	24	21	1.99
12171961--12172006	16	2.9	16	78	12	51	78	2	10	8	1.05
12172664--12173421	86	8.8	86	81	1	856	22	32	22	22	1.98
12172664--12173409	43	17.4	44	64	15	152	22	31	23	22	1.98
12172664--12173426	343	2.2	344	85	1	1012	22	31	22	23	1.98
12174130--12174316	43	4.3	43	75	10	177	19	33	25	21	1.97
12174130--12174389	129	2.0	125	83	4	324	20	32	25	22	1.98
12174322--12174471	76	2.0	74	85	5	205	20	33	24	22	1.97
12174385--12175906	86	17.9	85	74	8	855	22	30	22	24	1.99
12175014--12175066	27	2.0	27	81	7	63	20	32	24	22	1.98
12174886--12175329	156	2.7	156	81	8	451	22	31	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12175513--12175960	43	10.4	43	66	13	179	22	29	23	23	1.99
12189599--12190098	43	11.4	43	78	5	412	22	30	27	19	1.98
12190175--12190286	43	2.6	43	76	8	120	23	30	24	22	1.99
12191023--12191925	43	21.1	43	64	14	179	21	31	23	23	1.99
12191000--12192595	86	18.6	86	76	6	1241	22	30	22	24	1.99
12191000--12192595	429	3.7	424	79	5	1500	22	30	22	24	1.99
12191831--12191962	43	3.1	42	70	12	115	25	32	21	21	1.98
12192459--12192724	129	2.1	129	80	7	290	21	28	24	24	1.99
12192619--12193175	86	6.5	86	75	6	473	23	29	22	24	1.99
12192399--12192809	215	1.9	215	81	3	504	21	29	23	25	1.99
12192584--12193175	172	3.4	172	81	3	663	22	29	22	25	1.99
12192613--12193175	258	2.2	258	80	5	631	23	29	22	24	1.99
12196218--12196250	16	2.1	16	88	11	50	21	9	6	63	1.45
12201229--12201476	43	5.7	43	80	2	219	24	33	22	19	1.97
12201407--12202114	86	8.2	86	73	8	297	23	30	21	24	1.99
12201644--12201782	43	3.2	42	75	8	127	23	30	19	26	1.98
12201999--12202265	129	2.1	129	82	5	317	21	33	22	22	1.97
12202138--12202314	86	2.1	86	83	2	221	22	30	21	25	1.99
12203142--12203244	43	2.4	43	81	0	125	27	33	20	18	1.96
12203306--12203555	86	2.9	86	81	4	254	23	30	20	26	1.99
12204225--12204472	43	5.7	43	78	1	219	24	31	23	20	1.98
12204499--12204792	86	3.5	84	77	9	280	22	31	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12204656--12204821	43	3.9	43	72	13	153	22	31	21	25	1.98
12204747--12204835	43	2.1	43	85	4	117	23	31	21	23	1.98
12204651--12204921	129	2.1	129	81	4	305	22	31	21	25	1.98
12204780--12204988	86	2.4	85	84	4	260	22	31	22	23	1.99
12204910--12205058	75	2.0	76	86	1	210	22	31	23	22	1.98
12210681--12210861	40	4.5	40	83	2	202	35	17	20	25	1.94
12216636--12216666	15	2.0	16	93	6	55	58	0	3	38	1.15
12227651--12227713	21	3.2	21	79	18	57	68	0	7	23	1.16
12229359--12229433	16	4.6	16	70	21	57	22	8	2	66	1.31
12229357--12229431	15	4.8	15	73	13	62	21	8	2	68	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144