genome.fa.s7.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  86  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19829234--19829263	15	2.1	15	93	6	53	20	0	6	73	1.05
19830924--19830969	17	2.6	18	89	3	76	76	0	2	21	0.90
19832930--19833043	56	2.1	57	81	12	134	21	10	3	64	1.40
19836567--19836752	26	7.3	26	80	1	153	32	25	15	26	1.96
19836567--19836672	51	2.1	52	83	1	133	33	28	13	24	1.93
19837557--19837622	33	2.0	33	100	0	132	57	12	12	18	1.64
19845511--19845737	42	5.4	42	85	3	253	33	10	25	30	1.90
19845511--19845747	83	2.8	84	83	5	266	32	10	25	30	1.90
19853448--19853490	22	2.0	22	81	9	52	44	9	6	39	1.64
19860727--19860844	44	2.6	45	86	6	161	49	11	16	23	1.77
19860727--19860800	23	3.3	23	68	21	66	51	10	13	24	1.73
19860703--19860892	45	4.2	45	80	7	199	45	11	17	25	1.82
19861043--19861127	27	3.1	27	77	0	89	35	12	27	24	1.92
19867162--19867235	23	3.3	23	67	17	73	48	9	14	27	1.75
19867100--19867360	45	5.8	45	81	0	261	44	11	17	26	1.83
19867518--19867577	27	2.2	27	81	0	66	33	15	30	21	1.94
19872195--19872580	51	7.5	51	85	4	474	32	14	22	30	1.94
19872195--19872580	102	3.7	102	88	4	526	32	14	22	30	1.94
19875940--19875985	17	2.7	18	77	12	53	54	4	4	36	1.40
19882833--19882873	19	2.2	19	90	0	64	41	12	7	39	1.70
19900705--19900797	27	3.4	28	83	4	118	20	8	12	58	1.61
19903813--19903837	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19908916--19909015	40	2.5	40	83	0	110	41	16	15	28	1.88
19914556--19914664	54	2.0	54	84	7	141	27	26	25	20	1.99
19915626--19915694	35	2.0	35	88	0	102	44	11	17	26	1.82
19915713--19915763	24	2.2	23	82	3	57	35	1	3	58	1.28
19917562--19917630	35	2.0	35	91	0	111	44	11	14	28	1.80
19925601--19925782	98	1.9	97	81	3	222	42	10	7	39	1.68
19926141--19926191	21	2.5	20	81	9	57	33	15	5	45	1.71
19927596--19927631	8	4.6	8	89	6	56	0	11	2	86	0.68
19927596--19927631	15	2.3	16	95	4	65	0	11	2	86	0.68
19929344--19929786	230	1.9	230	98	0	859	33	17	22	26	1.96
19938451--19938814	181	2.0	181	97	0	683	37	10	7	44	1.67
19945465--19945699	56	4.2	56	82	0	290	24	15	21	38	1.92
19945453--19945699	112	2.2	112	86	0	350	24	15	21	38	1.93
19945877--19946001	31	4.2	32	71	17	106	27	15	9	48	1.76
19945924--19946001	32	2.5	31	78	2	84	29	14	10	46	1.77
19945877--19946057	91	2.0	89	82	4	220	25	14	11	48	1.77
19948823--19948883	32	1.9	31	83	9	79	52	19	8	19	1.71
19950438--19950799	29	12.5	28	79	6	251	34	25	4	35	1.76
19950718--19950817	30	3.4	28	77	9	83	39	25	3	33	1.71
19951708--19951744	11	3.5	11	96	3	67	32	8	8	51	1.61
19962931--19963337	206	2.0	206	85	3	552	34	20	23	21	1.96
19963689--19963765	6	13.3	6	73	13	72	42	1	2	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19963689--19963765	17	4.5	17	90	1	109	42	1	2	53	1.23
19963706--19963763	11	5.2	11	77	8	55	44	1	1	51	1.21
19964691--19964734	13	3.3	13	80	3	52	61	0	0	38	0.96
19964684--19964734	26	1.9	27	88	4	77	60	0	0	39	0.97
19965739--19966063	29	11.1	28	74	12	151	37	25	2	34	1.70
19965772--19965914	30	4.8	29	83	8	153	39	22	0	37	1.59
19965743--19966029	30	9.7	29	75	12	142	38	24	2	35	1.69
19965772--19966059	30	9.8	29	76	9	131	38	24	2	34	1.69
19969996--19970071	25	3.0	25	100	0	152	36	15	3	43	1.66
19975799--19975834	18	2.0	18	88	0	54	33	0	27	38	1.57
19977610--19977635	11	2.4	11	100	0	52	34	0	0	65	0.93
19978275--19978315	22	1.9	21	85	5	55	29	4	12	53	1.58
19978813--19978983	43	4.0	43	73	7	123	29	25	14	30	1.94
19979217--19979269	25	2.1	25	82	6	63	41	22	7	28	1.81
19982049--19982189	41	3.4	41	81	1	158	20	26	14	39	1.91
19985896--19985943	18	2.7	18	83	3	62	43	8	2	45	1.45
19986203--19986256	21	2.6	21	77	13	58	64	18	14	1	1.37
19986215--19986256	21	1.9	23	85	9	61	64	19	16	0	1.30
19989243--19989309	26	2.6	26	70	0	71	35	31	8	23	1.86
19997070--19997130	23	2.7	22	80	9	70	57	11	21	9	1.62
20001357--20001384	8	3.5	8	100	0	56	32	0	0	67	0.91
20001519--20001551	15	2.2	15	89	10	50	63	3	0	33	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20006090--20006159	23	3.0	23	82	2	95	41	15	12	30	1.85
20010653--20010713	29	2.1	29	84	3	79	27	13	31	27	1.94
20010692--20010952	59	4.4	60	88	4	388	33	4	29	32	1.77
20010664--20010949	29	9.7	29	70	20	166	33	5	30	31	1.80
20010695--20010958	30	8.9	29	70	20	174	34	4	29	32	1.77
20012663--20012698	18	2.0	18	94	0	63	22	13	27	36	1.92
20012749--20012831	6	14.0	6	70	12	64	53	1	4	40	1.30
20012751--20012809	31	1.9	31	89	0	91	54	1	5	38	1.33
20012751--20012832	17	5.0	17	85	8	98	54	1	4	39	1.29
20022897--20022996	43	2.3	43	91	0	164	31	10	13	46	1.75
20023450--20023483	6	5.7	6	100	0	68	35	29	35	0	1.58
20023450--20023489	18	2.2	18	90	0	62	37	25	37	0	1.56
20029018--20029088	29	2.5	29	93	2	117	29	5	12	52	1.62
20029317--20029423	31	3.5	31	69	19	89	44	11	15	28	1.81
20029310--20029481	60	2.9	59	86	0	218	47	9	15	26	1.77
20031545--20031736	58	3.2	60	78	4	192	25	16	13	45	1.82
20031850--20031930	31	2.6	31	80	2	90	44	9	16	29	1.79
20036601--20036650	25	2.0	25	92	0	82	26	18	22	34	1.96
20040693--20040746	26	2.1	26	100	0	108	37	3	3	55	1.35
20043617--20043677	26	2.4	25	82	12	72	59	0	1	39	1.08
20045979--20046023	22	2.0	22	100	0	90	46	13	13	26	1.80
20048560--20048595	17	2.1	18	89	5	56	38	0	5	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20049889--20050077	29	6.5	29	70	16	124	35	3	27	32	1.75
20049879--20050137	59	4.4	57	84	7	240	35	4	28	31	1.78
20049939--20050097	29	5.4	30	68	25	115	35	5	28	31	1.79
20049879--20050137	30	8.8	29	68	21	94	35	4	28	31	1.78
20051200--20051261	19	3.3	19	76	0	70	41	1	1	54	1.19
20051208--20051275	29	2.3	29	87	5	93	39	2	2	54	1.31
20051995--20052043	23	2.2	22	88	3	71	36	2	2	59	1.21
20051999--20052043	17	2.6	17	82	0	54	37	2	2	57	1.23
20052420--20053063	200	3.2	200	89	2	950	20	21	20	37	1.94
20065215--20065460	59	4.2	58	88	4	316	35	2	28	33	1.72
20067897--20067934	10	3.9	10	80	19	53	81	0	18	0	0.69
20068714--20068791	7	10.0	7	75	17	66	75	0	21	2	0.92
20068713--20068791	16	4.9	17	77	9	76	74	0	22	2	0.93
20068714--20068775	24	2.7	24	90	5	92	75	0	22	1	0.88
20070116--20070597	49	9.9	48	78	5	401	38	22	25	13	1.90
20070116--20070594	98	4.9	98	84	3	518	38	22	25	13	1.91
20070101--20070642	98	5.5	97	82	5	502	38	22	25	14	1.91
20071070--20071165	17	5.5	17	77	3	93	35	2	8	54	1.42
20072964--20073299	59	5.7	59	78	11	273	32	23	3	40	1.73
20073009--20073317	29	10.6	29	68	19	137	33	23	3	39	1.72
20095570--20095608	14	2.7	14	92	4	60	0	12	12	74	1.08
20106597--20106651	13	4.2	13	80	0	56	32	20	5	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20111916--20111942	2	13.5	2	100	0	54	48	0	0	51	1.00
20113441--20114034	322	1.8	322	81	5	745	32	19	15	33	1.92
20125356--20125873	39	13.3	39	70	4	209	24	30	19	26	1.98
20125356--20125785	78	5.5	78	83	1	511	23	30	19	26	1.98
20125360--20125936	78	7.3	77	76	8	221	24	29	18	26	1.98
20125360--20125850	156	3.1	154	78	4	536	24	30	18	26	1.98
20126633--20126680	18	2.7	18	80	0	51	54	2	0	43	1.12
20127187--20127217	15	2.1	15	93	0	53	58	3	0	38	1.15
20129592--20130029	109	4.0	109	87	1	628	21	10	17	49	1.77
20130881--20130987	54	2.0	54	88	0	160	53	7	26	13	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144