genome.fa.s7.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  140  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36702816--36703328	256	2.0	256	99	0	1017	32	13	19	34	1.91
36719995--36720059	21	3.0	21	73	8	76	46	3	7	43	1.48
36729415--36729457	6	7.2	6	100	0	86	16	51	0	32	1.45
36729611--36729644	15	2.3	15	89	0	50	58	2	5	32	1.37
36735001--36735038	20	1.9	20	88	0	58	52	2	0	44	1.14
36735002--36735065	27	2.3	28	84	7	78	54	4	3	37	1.37
36735215--36735261	9	5.4	9	77	10	53	31	0	0	68	0.90
36735215--36735271	26	2.2	25	84	6	69	29	1	1	66	1.12
36735249--36735301	20	2.7	20	82	8	63	24	5	1	67	1.22
36736158--36736195	18	2.1	18	100	0	76	36	10	7	44	1.68
36737543--36737577	10	3.5	10	96	0	61	37	0	14	48	1.44
36747115--36747155	20	1.9	23	85	14	61	60	0	7	31	1.24
36747160--36747290	57	2.4	55	78	10	142	56	5	2	35	1.35
36747288--36747318	10	3.1	10	95	0	53	32	3	0	64	1.09
36750078--36750135	28	2.1	28	83	6	73	36	1	12	50	1.50
36750127--36750176	26	1.9	26	83	0	64	32	0	10	58	1.31
36750242--36750282	6	6.8	6	83	10	57	65	14	2	17	1.37
36752593--36752620	13	2.2	13	100	0	56	50	0	0	50	1.00
36752612--36752643	16	2.1	16	94	5	57	59	0	0	40	0.97
36753625--36753686	27	2.3	27	100	0	124	22	41	25	9	1.84
36756694--36756796	28	3.8	26	71	18	86	37	1	3	56	1.29
36764281--36764322	16	2.6	16	81	14	50	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36764312--36764353	20	2.1	20	86	8	59	66	4	4	23	1.30
36764768--36764806	14	2.7	15	84	15	55	43	0	0	56	0.99
36766442--36766482	9	4.8	9	82	8	50	34	0	0	65	0.93
36773318--36773352	18	1.9	18	88	0	52	40	0	22	37	1.55
36775589--36775663	32	2.4	30	88	4	114	46	6	0	46	1.29
36775587--36775681	30	3.1	30	84	6	84	44	10	0	45	1.38
36775936--36775981	23	2.0	24	86	4	67	63	2	0	34	1.07
36781536--36781595	21	2.9	21	80	5	59	56	1	5	36	1.31
36787230--36787272	17	2.6	17	81	3	52	41	6	6	44	1.58
36789063--36789103	18	2.2	20	86	8	59	39	2	0	58	1.11
36792312--36792481	58	2.9	57	76	9	166	38	14	17	30	1.89
36793759--36793798	20	2.0	20	90	9	64	55	0	0	45	0.99
36799465--36799550	29	2.8	31	81	10	88	29	13	6	50	1.68
36803065--36803107	18	2.4	19	80	11	54	41	0	4	53	1.21
36804465--36804529	25	2.6	24	79	16	69	66	9	0	24	1.21
36814115--36814142	6	4.7	6	100	0	56	46	17	17	17	1.85
36814484--36814552	31	2.2	31	80	12	79	27	4	8	59	1.46
36814864--36814905	17	2.6	16	82	17	52	71	4	0	23	1.05
36826002--36826067	31	2.1	31	83	10	82	24	10	15	50	1.75
36827219--36827272	25	2.2	25	93	0	90	48	7	12	31	1.69
36827939--36827981	19	2.3	18	84	4	50	51	11	6	30	1.65
36836631--36836697	33	2.0	33	100	0	134	23	11	23	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36848135--36848172	4	9.5	4	100	0	76	23	50	0	26	1.50
36848453--36848501	18	2.9	17	81	6	55	73	4	0	22	1.00
36848826--36848850	13	1.9	13	100	0	50	16	8	8	68	1.38
36849235--36849301	30	2.3	30	82	7	75	31	7	5	55	1.52
36853295--36853329	11	3.3	11	88	8	54	40	0	8	51	1.33
36853327--36853359	15	2.1	16	88	5	50	48	0	0	51	1.00
36856380--36856511	6	21.8	6	92	1	156	17	0	78	4	0.92
36858196--36858273	31	2.6	30	82	15	90	52	8	0	38	1.33
36874694--36874736	15	2.7	16	78	10	52	25	0	0	74	0.82
36878153--36878214	32	1.9	32	93	0	106	48	0	8	43	1.32
36878449--36878508	18	3.4	18	77	11	61	61	0	0	38	0.96
36878449--36878507	16	3.4	17	76	11	57	61	0	0	38	0.96
36884348--36884389	17	2.5	17	84	7	59	40	0	4	54	1.21
36885694--36885718	12	2.1	12	100	0	50	32	8	40	20	1.81
36886301--36886582	29	9.7	30	68	21	181	31	32	3	32	1.74
36886304--36886618	59	5.4	59	91	1	483	32	32	3	32	1.74
36886304--36886618	117	2.7	118	89	2	476	32	32	3	32	1.74
36886392--36886617	29	7.7	28	66	24	94	32	31	2	33	1.72
36887135--36887464	153	2.2	151	86	4	450	33	16	13	36	1.88
36889795--36889845	21	2.4	21	83	9	59	49	3	5	41	1.45
36889859--36889883	12	2.1	12	100	0	50	60	16	8	16	1.58
36894013--36894047	18	1.9	18	94	0	61	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36893996--36894053	18	3.3	18	74	11	57	46	1	0	51	1.11
36895393--36895478	43	2.0	42	84	2	109	20	16	13	48	1.80
36899427--36899491	19	3.6	18	72	14	53	41	1	1	55	1.18
36900294--36900339	22	2.1	21	84	11	58	36	2	2	58	1.22
36906440--36906843	212	1.9	208	81	4	488	30	14	23	31	1.94
36909498--36909550	22	2.3	23	84	9	65	66	3	3	26	1.26
36915538--36915578	17	2.4	17	84	11	57	56	0	0	43	0.99
36917593--36917664	19	3.9	19	78	8	69	56	1	1	40	1.16
36917665--36917729	32	2.0	32	85	5	87	60	3	3	33	1.28
36917913--36918088	9	18.9	9	69	15	99	29	3	3	63	1.29
36917914--36918086	10	18.4	10	70	14	84	28	3	4	63	1.29
36917913--36917994	38	2.2	38	80	10	96	31	4	3	59	1.36
36917934--36918110	55	3.1	54	82	8	169	32	2	3	61	1.27
36923271--36923311	3	13.0	3	89	5	55	29	0	2	68	1.03
36924778--36924813	18	1.9	18	88	5	54	52	8	0	38	1.32
36925104--36925185	31	2.6	31	73	7	76	36	4	10	47	1.60
36926446--36926554	39	2.8	39	90	2	157	23	16	20	39	1.92
36928302--36928347	21	2.2	22	81	18	62	32	0	6	60	1.22
36937142--36937171	6	5.0	6	100	0	60	83	0	0	16	0.65
36948782--36948845	29	2.2	30	82	2	76	60	12	1	25	1.40
36962214--36962262	24	2.0	24	100	0	98	20	8	28	42	1.80
36962260--36962312	13	4.1	13	78	9	63	41	5	16	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36962907--36962947	19	2.2	19	86	0	55	24	14	26	34	1.94
36965852--36965902	3	17.0	3	100	0	102	33	0	0	66	0.92
36966141--36966179	18	2.2	18	85	0	51	71	5	0	23	1.05
36976522--36976547	6	4.3	6	100	0	52	84	0	15	0	0.62
36980251--36980275	12	2.1	12	100	0	50	44	0	32	24	1.54
36981549--36981595	21	2.2	22	88	3	69	53	2	6	38	1.39
36982248--36982308	31	2.0	31	90	0	95	24	16	9	49	1.76
36982250--36982327	31	2.5	31	85	2	93	26	14	11	47	1.78
36997312--36997346	2	17.5	2	100	0	70	0	48	0	51	1.00
37000581--37000606	12	2.2	12	100	0	52	50	23	19	7	1.73
37003856--37003884	2	14.5	2	100	0	58	51	0	0	48	1.00
37006893--37006923	4	7.8	4	100	0	62	51	22	0	25	1.48
37031229--37031346	58	2.0	58	100	0	236	38	10	5	44	1.63
37037850--37037892	16	2.7	15	82	7	50	32	11	0	55	1.36
37047284--37047321	17	2.3	17	86	4	51	52	0	2	44	1.14
37061636--37061716	36	2.2	36	88	0	117	30	7	38	23	1.82
37070500--37070526	3	9.0	3	100	0	54	66	0	0	33	0.92
37071318--37071454	74	1.9	73	83	4	177	26	15	11	46	1.80
37089481--37089654	69	2.5	69	92	0	294	35	21	13	29	1.91
37092304--37092337	18	1.9	17	88	5	50	52	0	0	47	1.00
37093429--37093467	19	2.1	19	85	9	53	66	0	5	28	1.12
37093851--37093900	26	1.9	26	87	0	73	14	12	10	64	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37096213--37096277	29	2.2	30	81	8	71	55	6	3	35	1.40
37112103--37112179	25	3.2	25	76	14	79	10	25	22	41	1.85
37112102--37112199	23	4.2	23	83	10	135	11	24	23	40	1.87
37112198--37112291	23	4.0	23	75	16	86	11	25	19	43	1.84
37123018--37123078	31	2.0	31	83	3	79	52	4	6	36	1.49
37141902--37141944	13	3.3	13	93	6	70	20	0	0	79	0.74
37165191--37165253	24	2.6	24	82	0	81	52	11	11	25	1.70
37173850--37173882	12	2.9	12	86	13	52	30	0	0	69	0.88
37175154--37175186	2	16.5	2	100	0	66	48	0	0	51	1.00
37194570--37194619	23	2.2	23	85	7	66	38	12	16	34	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144