genome.fa.s7.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  54  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10602080--10602155	35	2.2	35	85	0	107	15	31	31	21	1.94
10609943--10609979	3	12.3	3	100	0	74	35	0	0	64	0.94
10610046--10610080	3	11.7	3	87	0	52	34	5	0	60	1.21
10610046--10610080	15	2.3	15	100	0	70	34	5	0	60	1.21
10610244--10611141	43	20.9	43	69	13	431	20	26	35	17	1.95
10610514--10611014	172	2.9	172	93	0	867	21	26	34	16	1.95
10610514--10611014	86	5.8	85	88	2	720	21	26	34	16	1.95
10610471--10611046	172	3.3	172	88	4	747	21	27	34	17	1.95
10611777--10611869	43	2.2	43	96	0	168	15	31	33	20	1.93
10615907--10615937	12	2.6	12	94	0	53	48	0	0	51	1.00
10616781--10617114	162	2.1	162	91	0	533	25	17	12	44	1.84
10617206--10617373	29	5.7	28	71	17	119	35	29	1	33	1.68
10617206--10617365	30	5.4	29	73	20	136	35	28	1	34	1.68
10617179--10617481	116	2.6	117	87	1	419	33	27	2	36	1.71
10617186--10617458	29	9.3	29	66	22	115	32	28	2	36	1.71
10617179--10617488	59	5.3	59	85	1	399	32	28	2	36	1.72
10622949--10623019	27	2.5	28	79	6	72	42	14	16	26	1.87
10623154--10623193	20	2.1	19	90	4	62	37	2	0	60	1.11
10623311--10623350	18	2.3	17	86	4	53	32	0	2	65	1.06
10628270--10628326	23	2.4	24	80	13	64	35	3	1	59	1.25
10634260--10634308	2	24.5	2	95	0	89	51	2	0	46	1.12
10641492--10641543	21	2.5	21	96	0	95	30	23	9	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10642312--10642431	25	4.5	25	79	12	123	36	25	15	22	1.93
10642331--10642435	55	1.9	55	90	0	165	35	24	14	25	1.93
10646204--10646238	15	2.4	14	86	9	52	0	22	0	77	0.78
10663561--10663626	34	1.9	34	93	0	114	28	18	12	40	1.86
10665214--10665293	17	4.6	17	82	1	79	45	10	21	23	1.82
10671501--10671590	25	3.5	25	86	3	117	34	25	15	24	1.95
10680635--10680828	97	2.0	97	91	2	318	37	17	18	27	1.92
10681136--10681388	58	4.3	59	77	6	160	38	3	24	33	1.73
10681171--10681492	115	2.8	115	85	6	420	37	4	26	32	1.75
10681112--10681480	87	4.2	86	76	11	283	37	3	25	33	1.74
10681265--10681505	86	2.8	86	79	10	246	35	3	26	34	1.74
10681165--10681501	29	11.6	30	77	11	292	36	3	26	32	1.75
10682627--10682659	14	2.4	14	94	0	57	39	0	0	60	0.97
10683241--10683278	16	2.3	17	86	4	51	52	5	2	39	1.38
10685413--10685454	22	1.9	22	90	0	66	54	16	0	28	1.42
10694168--10694235	21	3.2	21	87	4	84	32	14	20	32	1.93
10696057--10696370	158	2.0	158	86	2	434	21	25	24	28	1.99
10700424--10700455	16	2.0	16	100	0	64	18	25	6	50	1.70
10702254--10702323	30	2.3	31	87	9	99	48	0	1	50	1.09
10703910--10704006	42	2.3	42	85	3	124	31	10	16	41	1.82
10704089--10704137	24	2.0	24	92	0	80	22	22	24	30	1.99
10704078--10704236	63	2.5	63	90	3	257	24	20	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10704152--10704199	24	2.0	24	83	0	60	25	14	27	33	1.94
10704176--10704306	39	3.4	39	82	4	165	23	19	23	33	1.97
10706473--10706643	69	2.5	70	84	5	222	27	21	20	30	1.98
10706932--10707124	67	2.8	67	83	3	235	27	21	18	31	1.97
10706598--10707035	158	2.8	157	79	2	382	26	21	18	33	1.97
10710698--10710746	16	3.1	16	100	0	98	32	12	24	30	1.92
10712638--10712687	7	7.0	7	88	11	75	70	0	2	28	0.99
10714521--10714563	18	2.4	18	88	7	61	53	0	0	46	1.00
10715033--10715071	15	2.5	16	83	8	53	61	0	0	38	0.96
10717032--10717064	17	1.9	17	93	0	57	48	0	0	51	1.00
10717635--10717671	2	18.5	2	94	0	65	0	54	0	45	1.00
10722601--10722643	20	2.1	21	86	4	61	39	2	9	48	1.48
10730002--10730059	29	2.0	28	83	3	71	31	8	6	53	1.58
10735580--10735645	25	2.6	25	97	0	123	50	31	0	18	1.47
10735628--10735706	27	2.8	26	83	11	86	49	36	6	7	1.57
10735712--10735776	21	3.2	21	80	4	62	20	18	24	36	1.94
10735709--10735752	7	6.3	7	83	0	52	20	20	27	31	1.97
10739047--10739178	69	1.9	69	98	0	255	31	21	22	25	1.98
10747807--10747863	30	1.9	30	89	3	89	57	1	0	40	1.09
10748148--10748203	20	2.7	21	73	10	53	30	3	1	64	1.21
10748219--10748271	28	1.9	28	88	3	81	47	1	0	50	1.12
10748640--10748692	19	2.9	18	81	8	63	56	0	7	35	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10748647--10748692	19	2.5	18	89	3	65	56	0	8	34	1.30
10748763--10748804	16	2.6	16	88	3	66	30	0	4	64	1.14
10751429--10751505	38	2.0	38	100	0	154	27	23	23	25	2.00
10751690--10751738	20	2.7	18	77	22	57	51	4	2	42	1.32
10754173--10754220	26	1.9	26	83	8	64	43	0	22	33	1.54
10754283--10754405	23	5.4	22	86	3	129	12	24	23	39	1.89
10763980--10764038	24	2.5	24	94	0	109	32	27	20	20	1.97
10768400--10768479	24	3.3	24	92	0	133	33	25	17	23	1.96
10777824--10777872	21	2.3	21	82	0	62	0	36	0	63	0.95
10787655--10787687	15	2.2	15	94	0	57	72	0	27	0	0.85
10787659--10787688	10	3.0	10	95	0	51	66	0	33	0	0.92
10791828--10792191	43	8.5	43	77	4	333	30	28	17	24	1.97
10792321--10792353	15	2.2	15	100	0	66	48	30	0	21	1.50
10798142--10798199	26	2.2	26	93	0	98	31	25	12	31	1.92
10798234--10798345	48	2.4	46	83	11	140	44	2	7	45	1.45
10798346--10798376	14	2.2	14	94	0	53	35	3	9	51	1.51
10798285--10798369	29	3.0	29	74	17	79	44	1	7	47	1.38
10798338--10798467	56	2.3	57	89	1	190	43	2	8	45	1.47
10798439--10798568	8	16.5	8	66	20	69	55	2	1	40	1.22
10798449--10798569	18	7.1	18	72	17	105	54	1	1	42	1.20
10798494--10798565	32	2.3	30	86	9	92	55	2	0	41	1.14
10798599--10798665	26	2.6	26	95	0	125	41	2	7	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10798699--10798808	56	2.0	56	92	0	184	45	2	6	45	1.43
10798796--10798869	32	2.4	30	84	4	94	51	2	1	44	1.24
10798773--10798980	76	2.7	76	93	0	353	48	4	3	43	1.39
10798901--10798961	22	2.8	22	77	5	61	52	3	1	42	1.27
10800132--10800159	2	14.0	2	100	0	56	50	50	0	0	1.00
10802973--10803117	41	3.5	41	83	1	175	22	22	17	37	1.93
10803157--10803198	22	2.0	21	86	13	59	45	0	2	52	1.13
10804960--10805440	41	11.8	41	85	5	568	20	29	18	31	1.96
10804960--10805439	204	2.3	205	84	5	616	20	29	18	31	1.96
10804960--10805523	82	6.9	79	82	7	521	20	27	18	32	1.96
10804960--10805523	41	13.9	40	81	6	258	20	27	18	32	1.96
10805368--10805522	39	3.8	39	77	5	130	20	22	19	38	1.94
10808507--10809047	268	2.0	269	92	3	910	43	15	13	26	1.85
10814525--10814648	40	3.1	40	80	5	135	32	26	16	24	1.96
10817499--10817671	29	6.0	29	80	1	168	41	18	9	31	1.82
10833238--10833285	17	2.8	16	79	17	51	12	20	12	54	1.70
10833242--10833278	18	2.0	19	89	5	58	13	18	10	56	1.66
10838708--10839054	173	2.0	173	95	0	622	25	17	19	37	1.93
10848647--10848679	17	1.9	17	93	0	57	78	6	3	12	1.04
10852156--10853055	251	3.6	251	95	0	1593	28	17	12	42	1.85
10858237--10858268	3	10.3	3	93	6	55	68	0	0	31	0.90
10860700--10861022	30	10.8	30	86	4	420	38	1	24	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10863017--10863163	47	3.2	46	79	5	161	35	27	19	17	1.94
10866783--10866954	29	6.0	29	80	2	177	31	8	18	41	1.81
10866790--10866953	87	1.9	86	86	3	231	31	7	19	40	1.80
10869882--10869937	21	2.7	21	80	5	69	26	8	30	33	1.87
10881123--10881156	17	2.0	17	94	0	59	32	17	2	47	1.63
10882564--10882610	20	2.3	20	96	0	85	19	19	23	38	1.93
10883309--10883338	6	4.8	6	92	8	51	0	20	0	80	0.72
10883309--10883338	13	2.4	12	94	5	51	0	20	0	80	0.72
10886667--10886916	132	1.9	132	90	1	403	20	18	17	44	1.87
10892155--10892193	14	2.8	13	85	11	51	69	2	17	10	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144