genome.fa.s7.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  108  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25254719--25254781	28	2.2	28	88	5	92	28	9	28	33	1.88
25254720--25255164	146	3.0	144	81	5	531	37	7	23	31	1.84
25255011--25255071	28	2.1	29	87	3	88	27	4	26	40	1.76
25255201--25255326	29	4.3	30	81	7	150	35	4	27	31	1.78
25255201--25255339	59	2.4	59	87	1	190	34	5	26	33	1.78
25255242--25255370	29	4.3	31	77	14	89	34	6	23	35	1.80
25256437--25256513	3	24.0	3	73	19	50	35	2	2	59	1.25
25256478--25256532	28	2.0	28	85	7	76	41	1	3	52	1.29
25262183--25262268	6	14.3	6	70	20	56	46	0	2	51	1.13
25262182--25262268	17	4.9	17	77	15	86	45	0	2	51	1.13
25262183--25262271	11	8.0	11	71	15	51	48	0	2	49	1.13
25263979--25264074	29	3.4	28	66	25	74	31	29	0	39	1.57
25264124--25264223	29	3.4	28	69	21	80	32	27	3	38	1.72
25263902--25264247	58	5.9	59	83	5	382	33	25	1	39	1.66
25263902--25264247	175	2.0	176	86	5	497	33	25	1	39	1.66
25268933--25268977	16	2.6	17	86	10	65	80	0	20	0	0.72
25271150--25271390	50	4.8	50	67	13	136	39	20	25	14	1.90
25271103--25271422	101	3.2	100	84	2	401	41	21	24	13	1.88
25271120--25271361	50	4.8	50	66	12	147	38	19	26	15	1.92
25271578--25272249	76	8.9	76	92	1	1095	34	15	16	33	1.91
25271578--25272341	152	5.0	152	89	4	1110	34	15	16	32	1.91
25271578--25272341	228	3.3	228	90	5	1162	34	15	16	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25272225--25272389	52	3.4	51	72	25	178	36	16	16	30	1.91
25272176--25272442	92	2.9	91	90	4	389	35	16	16	30	1.92
25275131--25275475	58	5.9	58	80	9	357	33	27	2	37	1.68
25275236--25275324	29	3.1	29	68	26	80	34	28	2	34	1.70
25275131--25275475	174	2.0	174	85	7	470	33	27	2	37	1.68
25275131--25275482	116	3.0	117	81	8	432	33	26	2	37	1.69
25276761--25276810	24	2.0	25	81	14	59	30	12	8	50	1.68
25280156--25280215	29	2.0	29	84	9	77	15	33	33	18	1.92
25287626--25287660	10	3.6	10	88	3	54	82	0	17	0	0.66
25287643--25287677	12	2.9	12	87	12	54	82	0	17	0	0.66
25287626--25287673	10	4.6	10	82	7	51	83	0	16	0	0.65
25288545--25289124	99	5.9	97	87	3	793	36	16	27	19	1.93
25288547--25289128	49	11.8	50	74	8	449	36	16	27	19	1.93
25288545--25289124	197	2.9	197	90	1	903	36	16	27	19	1.93
25289136--25289236	49	2.1	49	90	0	157	36	22	25	14	1.93
25289317--25289700	97	3.8	98	88	4	468	36	15	17	30	1.91
25289435--25289700	51	5.2	51	65	13	150	36	15	18	29	1.91
25289323--25289700	102	3.7	102	88	3	500	35	15	17	31	1.91
25290215--25290243	14	2.0	15	93	6	51	44	0	0	55	0.99
25293420--25293657	41	5.9	41	86	4	288	26	23	27	22	1.99
25294758--25294790	16	2.1	16	88	11	50	63	0	6	30	1.18
25294932--25294957	13	2.0	13	100	0	52	53	23	7	15	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25297265--25297392	18	6.9	18	74	15	100	39	0	4	54	1.27
25297301--25297460	54	3.2	54	66	23	159	41	1	5	50	1.36
25297348--25297383	8	4.2	8	86	13	54	38	0	0	61	0.96
25297265--25297465	94	2.1	94	96	0	366	41	1	4	52	1.32
25297280--25297750	32	14.3	33	66	19	152	44	1	5	48	1.34
25297359--25298975	135	11.8	135	73	12	1055	42	4	5	46	1.47
25297587--25297631	23	1.9	24	82	13	58	60	0	4	35	1.17
25297636--25297804	75	2.2	76	95	1	304	41	1	5	51	1.35
25297791--25297840	18	2.8	18	81	0	73	48	0	2	50	1.12
25298128--25298217	18	5.6	17	72	17	61	41	1	2	55	1.19
25298135--25298203	26	2.6	26	82	13	86	43	0	1	55	1.08
25298325--25298575	76	3.3	76	94	0	432	41	1	5	50	1.37
25297037--25298624	824	1.9	800	86	7	2232	42	6	6	44	1.58
25298640--25298725	24	3.3	24	70	26	77	43	2	5	48	1.39
25298665--25298757	22	3.8	23	73	26	84	44	1	4	50	1.28
25298640--25298757	54	2.2	54	98	1	229	43	1	5	50	1.34
25298076--25298985	286	3.3	276	85	9	1144	43	2	5	49	1.36
25298688--25298969	76	3.9	76	76	16	326	42	1	4	51	1.33
25298816--25299234	18	21.9	18	66	17	100	43	1	3	51	1.29
25298823--25298894	26	2.7	26	82	16	85	43	1	1	54	1.17
25298500--25298895	188	2.1	187	79	11	414	44	2	4	48	1.36
25298816--25298947	62	2.1	61	83	5	158	42	1	2	53	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25299043--25299226	12	15.6	12	64	19	66	45	1	2	51	1.20
25298305--25299081	340	2.3	329	80	12	924	43	2	5	49	1.37
25298858--25299141	113	2.6	113	88	2	425	44	1	4	49	1.31
25299155--25299234	8	9.8	8	73	17	58	42	1	0	56	1.07
25299160--25299234	30	2.7	29	83	8	93	42	1	0	56	1.08
25299151--25299234	30	3.0	28	82	10	91	44	1	0	54	1.07
25304713--25304869	65	2.4	66	86	1	235	42	16	24	15	1.88
25304855--25304906	21	2.5	21	90	0	77	34	21	44	0	1.52
25305191--25305421	43	5.4	44	90	3	337	29	21	30	18	1.97
25305191--25305421	85	2.7	85	86	6	331	29	21	30	18	1.97
25306407--25306441	15	2.3	15	95	0	61	20	14	34	31	1.92
25311161--25311212	24	2.2	24	82	0	59	38	21	9	30	1.85
25311823--25311957	52	2.6	52	86	0	198	36	24	13	25	1.92
25313070--25313123	27	2.0	27	96	0	99	33	31	11	24	1.90
25314380--25314417	11	3.6	11	82	13	53	47	2	0	50	1.15
25314380--25314417	20	1.9	20	94	0	67	47	2	0	50	1.15
25322637--25322680	18	2.4	18	88	7	63	4	9	11	75	1.19
25327710--25328258	275	2.0	274	91	0	882	35	5	21	37	1.78
25328500--25328578	41	1.9	41	97	0	149	36	10	27	25	1.88
25328552--25328604	25	2.1	25	92	0	88	33	13	30	22	1.92
25328511--25328638	66	1.9	66	88	0	193	36	11	25	25	1.90
25329903--25329940	3	12.7	3	83	10	51	31	0	63	5	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25333143--25333272	34	3.8	34	75	4	109	31	6	15	46	1.70
25333620--25333689	29	2.3	29	90	4	104	55	24	1	18	1.50
25336267--25336297	16	1.9	16	93	0	53	83	0	16	0	0.64
25340665--25340721	24	2.4	24	87	0	78	35	5	12	47	1.64
25344792--25344836	6	7.5	6	89	0	63	46	0	31	22	1.52
25345840--25346005	82	2.0	82	96	0	305	34	8	19	36	1.83
25347872--25347930	29	2.0	29	86	0	82	20	13	33	32	1.91
25347967--25348038	36	2.0	36	91	2	119	45	13	13	26	1.81
25348406--25348452	16	2.9	16	83	3	58	46	0	4	48	1.21
25348398--25348469	33	2.1	34	85	10	94	43	1	4	51	1.29
25348404--25348519	6	20.3	6	68	13	66	43	2	5	49	1.38
25348397--25348519	17	6.9	17	71	14	86	43	2	4	49	1.37
25350243--25350611	162	2.3	161	87	4	521	24	18	14	41	1.88
25350640--25350719	29	2.8	28	77	7	79	40	26	6	27	1.80
25352595--25352688	47	2.0	47	89	0	143	38	5	23	32	1.77
25353001--25353075	11	6.5	11	73	13	62	5	2	25	66	1.26
25353001--25353076	12	6.6	12	73	8	68	5	2	25	67	1.25
25353015--25353087	35	2.1	34	82	7	85	8	4	19	68	1.32
25354981--25355075	11	9.8	9	78	18	70	47	0	0	52	1.00
25354996--25355083	11	8.5	11	79	16	91	47	1	0	51	1.08
25354981--25355083	20	5.2	20	73	21	92	46	0	0	52	1.07
25354981--25355083	50	2.1	50	87	8	149	46	0	0	52	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25354981--25355078	39	2.5	37	80	18	110	47	0	0	52	1.00
25357361--25357390	12	2.5	12	88	0	51	60	0	0	40	0.97
25357756--25357810	16	3.4	16	87	5	83	41	0	3	54	1.18
25357739--25357810	33	2.2	33	87	0	99	37	0	6	55	1.27
25357756--25357828	33	2.2	34	87	2	103	42	1	4	52	1.29
25362657--25362828	50	3.4	50	73	11	170	39	23	25	12	1.89
25362605--25362942	101	3.3	101	81	5	362	41	23	23	12	1.87
25362600--25362872	51	5.4	50	72	11	196	42	21	24	11	1.86
25362600--25363019	49	8.3	50	74	11	202	41	22	24	11	1.87
25362596--25363040	101	4.4	97	79	7	347	40	23	24	11	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144