genome.fa.s7.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  64  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13739310--13739369	26	2.2	28	80	11	72	65	0	0	35	0.93
13741143--13741195	22	2.5	21	82	11	63	62	3	0	33	1.13
13755212--13755240	15	1.9	15	100	0	58	24	34	34	6	1.82
13755350--13755413	30	2.1	30	85	8	85	54	6	0	39	1.26
13755377--13755450	37	2.1	36	87	5	105	47	4	2	45	1.35
13755697--13755739	22	2.0	22	86	9	61	67	6	25	0	1.15
13756252--13756298	24	2.0	24	100	0	94	44	21	17	17	1.86
13758705--13758743	21	1.9	21	84	5	53	25	2	28	43	1.68
13758727--13758780	14	3.9	14	87	0	72	18	0	31	50	1.48
13758727--13758779	7	7.6	7	86	0	61	18	0	32	49	1.48
13758711--13758777	21	3.2	21	76	0	71	19	1	31	47	1.58
13759196--13759235	6	6.7	6	94	0	53	0	40	12	47	1.41
13761068--13761116	16	3.2	16	72	21	59	30	0	8	61	1.25
13764633--13764724	23	4.0	23	88	2	123	13	18	23	44	1.85
13769739--13769889	49	2.9	50	81	13	155	45	1	1	51	1.21
13776522--13776574	21	2.6	21	81	3	54	56	7	16	18	1.63
13776537--13776575	20	1.9	21	89	5	62	51	5	20	23	1.67
13779446--13779851	94	4.4	94	86	0	494	29	16	22	31	1.96
13780576--13780631	21	2.7	21	85	0	76	35	7	19	37	1.79
13791093--13791143	4	12.8	4	79	8	59	74	0	1	23	0.92
13791082--13791139	17	3.7	16	72	25	52	72	0	3	24	1.00
13791082--13791144	29	2.2	28	85	2	81	73	0	3	23	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13791141--13791174	18	1.9	17	88	5	50	73	8	5	11	1.24
13792592--13792631	11	3.5	11	83	12	53	10	2	20	67	1.31
13799078--13799109	13	2.5	13	95	5	57	0	21	0	78	0.76
13815701--13815793	42	2.2	42	92	3	152	37	5	21	35	1.76
13819875--13819939	20	3.2	20	78	4	69	15	36	18	29	1.91
13819865--13820000	40	3.4	39	80	5	146	16	30	18	35	1.93
13819885--13819999	20	5.8	20	69	11	74	14	30	19	35	1.92
13820321--13820360	21	2.0	20	90	5	62	52	2	0	45	1.14
13820315--13820417	51	2.0	50	87	5	145	53	0	2	42	1.22
13821180--13821230	25	2.0	25	100	0	102	45	15	27	11	1.81
13821241--13821320	30	2.7	30	92	1	126	45	1	1	52	1.16
13821282--13821323	21	2.0	21	86	9	59	47	0	0	52	1.00
13842642--13842680	18	2.2	18	86	9	53	35	30	15	17	1.91
13848967--13849019	20	2.7	20	100	0	106	11	18	0	69	1.17
13848961--13849017	20	2.5	24	78	21	86	10	21	0	68	1.19
13849613--13849645	17	1.9	18	88	11	52	66	12	9	12	1.44
13861119--13861171	21	2.5	21	81	6	63	33	20	13	32	1.91
13861932--13862164	52	4.5	52	92	2	371	36	21	13	28	1.91
13867541--13867581	12	3.4	12	100	0	82	65	0	34	0	0.93
13876176--13876209	13	2.8	12	86	8	50	17	2	8	70	1.25
13876178--13876207	13	2.3	13	94	0	51	13	3	6	76	1.11
13893945--13893992	2	24.0	2	100	0	96	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13895641--13895699	23	2.7	21	82	7	57	16	10	5	67	1.37
13906508--13906635	58	2.2	58	86	8	181	24	21	7	46	1.77
13907627--13908168	204	2.6	209	82	8	638	39	14	12	33	1.84
13910078--13910603	81	6.5	81	91	0	800	23	16	29	30	1.96
13921999--13922196	110	1.8	110	81	0	252	36	18	14	29	1.91
13922129--13922652	205	2.5	210	82	7	602	39	13	12	34	1.82
13924394--13924420	14	1.9	14	100	0	54	7	11	0	81	0.87
13931371--13931421	24	2.0	25	85	7	68	52	0	3	43	1.19
13931801--13931846	11	4.2	11	83	8	58	43	0	0	56	0.99
13931933--13931968	13	2.8	13	100	0	72	52	16	13	16	1.74
13933014--13933078	29	2.3	28	84	5	85	58	13	18	9	1.61
13933545--13933594	24	2.1	23	81	3	55	50	2	0	48	1.12
13933605--13933650	20	2.3	20	82	10	51	47	2	0	50	1.13
13937375--13937462	42	2.1	42	89	4	133	30	0	19	50	1.48
13937591--13937628	9	4.2	9	89	0	58	31	10	10	47	1.72
13939295--13939337	20	2.2	20	87	4	61	46	9	9	34	1.68
13940861--13940890	14	2.1	15	93	6	53	60	0	26	13	1.34
13940860--13940894	15	2.3	16	85	14	56	51	0	31	17	1.45
13943045--13943145	52	1.9	52	90	4	159	21	25	13	38	1.91
13943068--13943254	76	2.5	76	82	0	212	21	26	16	35	1.94
13943196--13943249	24	2.2	24	83	0	72	22	31	14	31	1.94
13949485--13949750	24	10.7	24	72	7	181	21	28	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13949557--13949694	54	2.6	51	80	3	150	23	24	13	37	1.92
13949509--13949790	153	1.8	154	87	2	424	22	27	15	34	1.94
13949568--13949809	52	4.7	52	74	7	217	23	26	14	34	1.94
13949613--13949802	100	1.9	102	84	2	258	22	28	15	33	1.94
13960747--13960954	26	8.0	25	71	8	130	25	27	19	27	1.99
13960748--13960893	77	1.9	77	82	2	186	23	28	20	28	1.99
13960740--13960951	52	4.1	52	80	3	205	25	26	18	28	1.98
13962275--13962327	24	2.2	24	100	0	106	24	20	20	33	1.97
13964788--13964863	15	5.1	15	81	0	80	22	21	26	30	1.99
13964800--13964863	30	2.1	30	94	0	110	23	20	23	32	1.98
13967188--13967254	18	3.8	18	75	20	61	67	1	23	7	1.25
13967161--13967215	21	2.7	19	84	13	74	69	1	21	7	1.23
13978043--13978192	78	1.9	77	93	1	255	22	14	14	50	1.77
13989274--13989314	19	2.2	19	100	0	82	17	26	4	51	1.65
13992449--13992498	3	16.7	3	95	0	91	34	34	0	32	1.58
13992929--13993359	152	2.8	150	85	7	555	43	3	9	43	1.54
13993507--13993545	21	1.9	21	89	5	62	43	2	5	48	1.38
13993591--13993631	21	2.0	20	85	9	55	48	2	2	46	1.28
13993072--13993607	293	1.8	290	84	6	731	41	4	9	44	1.56
14000320--14000353	12	2.6	13	90	9	52	29	2	8	58	1.43
14002090--14002164	29	2.6	29	97	0	141	48	26	2	22	1.64
14002312--14002355	22	2.0	23	90	4	72	47	18	4	29	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14010838--14010908	27	2.6	27	88	0	97	30	9	26	32	1.89
14010838--14010917	27	3.0	27	80	7	74	31	11	26	31	1.91
14020436--14020473	19	2.0	19	94	0	67	47	0	18	34	1.49
14020528--14020626	47	2.1	47	94	0	171	30	14	22	33	1.93
14021914--14022755	421	2.0	421	99	0	1675	19	20	14	45	1.85
14024083--14024128	11	4.4	11	81	8	51	45	0	0	54	0.99
14024906--14024940	15	2.4	15	90	4	54	62	2	28	5	1.32
14025057--14025090	12	2.8	13	82	17	54	50	0	0	50	1.00
14026773--14026825	25	2.1	25	86	6	72	35	0	18	45	1.50
14026807--14026891	32	2.7	32	100	0	170	28	2	18	50	1.59
14028318--14028353	14	2.6	14	90	0	54	27	25	8	38	1.84
14033271--14033298	13	2.2	13	100	0	56	53	14	0	32	1.41
14037944--14037996	26	2.1	25	82	6	63	43	3	3	49	1.38
14037972--14038018	19	2.5	20	82	10	62	51	4	0	44	1.21
14038225--14038323	42	2.5	39	79	10	110	38	1	2	58	1.16
14039934--14039973	9	4.4	9	100	0	80	45	10	0	45	1.37
14042093--14042155	20	3.1	20	71	11	56	34	3	4	57	1.36
14050862--14051056	75	2.6	76	82	2	241	27	22	26	24	2.00
14056556--14056649	26	3.7	26	81	1	100	27	14	27	29	1.96
14062358--14062496	24	5.7	24	75	3	107	22	30	14	32	1.94
14062358--14062502	74	2.0	74	80	2	166	23	29	13	33	1.93
14062470--14062615	50	2.9	50	86	0	193	19	24	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14063544--14063606	32	2.0	32	100	0	126	33	19	0	47	1.49
14065908--14066042	71	1.9	71	95	0	243	9	14	12	62	1.53
14069874--14070005	49	2.7	49	89	0	201	27	16	33	22	1.96
14069965--14070035	32	2.2	32	87	0	97	23	14	36	25	1.92
14069874--14070020	49	3.0	47	77	11	136	26	16	34	23	1.95
14070684--14070733	20	2.5	20	86	0	64	26	4	20	50	1.66
14072697--14072729	17	1.9	17	88	11	50	60	0	6	33	1.21
14074120--14074250	68	1.9	68	89	3	201	51	3	2	42	1.32
14077574--14077613	15	2.7	15	80	0	53	42	20	10	27	1.83
14078029--14078074	24	1.9	24	86	0	65	47	19	13	19	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144