genome.fa.s7.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  131  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32709754--32709901	60	2.5	59	83	6	174	29	17	11	41	1.84
32709611--32710071	168	2.8	162	78	12	440	29	16	13	40	1.87
32709938--32710164	60	3.7	60	81	7	253	29	15	14	40	1.87
32710307--32710514	111	1.9	111	88	0	317	27	27	16	27	1.97
32714331--32714537	85	2.4	84	82	10	242	41	10	12	36	1.76
32714448--32714880	60	7.3	60	75	12	299	40	10	17	31	1.83
32714502--32714892	119	3.3	116	79	9	375	41	10	16	30	1.83
32714508--32714833	176	1.9	174	87	5	478	41	10	16	31	1.82
32714862--32714918	26	2.2	26	93	0	96	50	5	5	38	1.47
32724620--32724659	18	2.2	18	100	0	80	40	5	10	45	1.60
32734498--32734567	12	5.9	12	70	9	54	72	10	2	14	1.21
32734484--32734600	23	5.0	24	69	12	80	70	13	4	11	1.31
32734515--32734600	35	2.5	35	82	3	102	70	13	3	11	1.28
32734584--32734662	22	3.8	20	77	11	72	68	20	6	5	1.31
32747255--32747317	32	2.0	32	84	6	83	52	7	3	36	1.47
32757043--32757085	14	3.3	12	84	12	50	2	32	2	62	1.20
32758626--32758714	23	3.9	23	82	2	99	15	21	21	41	1.90
32759313--32759337	13	1.9	13	100	0	50	24	8	8	60	1.52
32760238--32760355	57	2.1	58	85	4	159	49	5	16	29	1.67
32761386--32761620	78	3.0	78	93	0	409	42	12	8	36	1.74
32762191--32762258	31	2.2	31	82	10	77	33	7	14	44	1.73
32764012--32764063	16	3.4	16	72	20	56	46	0	1	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32764207--32764266	27	2.3	26	78	13	63	43	3	0	53	1.17
32771730--32771770	3	13.7	3	94	0	64	29	34	0	36	1.58
32774326--32774417	20	4.7	19	71	17	57	60	3	6	29	1.37
32774808--32774893	10	8.5	10	74	13	61	26	3	1	68	1.13
32774819--32774865	23	2.1	22	92	4	76	29	2	0	68	1.02
32774805--32774876	33	2.2	33	87	7	101	27	2	1	68	1.12
32774949--32775038	10	9.7	9	75	19	78	23	3	1	72	1.06
32774952--32775040	9	9.9	8	74	23	63	23	3	1	71	1.07
32774958--32775040	19	4.6	18	78	15	84	25	2	1	71	1.06
32774951--32775040	27	3.2	28	85	11	98	23	3	1	72	1.06
32774947--32775038	46	2.0	46	89	4	141	23	3	1	71	1.07
32774935--32775040	17	5.7	19	71	23	73	27	2	0	68	1.09
32779515--32779541	14	1.9	14	100	0	54	18	0	14	66	1.25
32782532--32782573	9	4.9	9	80	11	52	33	9	2	54	1.46
32782545--32782578	16	2.1	16	100	0	68	38	5	0	55	1.24
32783249--32783274	12	2.2	12	100	0	52	69	7	0	23	1.14
32784045--32784107	31	2.0	31	84	6	83	61	3	3	31	1.27
32785870--32785918	10	4.6	10	85	7	53	69	6	0	24	1.11
32785870--32785918	11	4.5	11	80	14	57	69	6	0	24	1.11
32786055--32786099	12	3.7	12	84	3	54	62	20	8	8	1.51
32786102--32786173	6	12.2	6	74	10	51	80	15	1	2	0.89
32786136--32786198	21	3.1	19	75	9	54	73	19	3	4	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32787401--32787461	27	2.2	26	78	16	70	50	1	4	42	1.33
32805514--32805555	22	1.9	22	85	9	59	64	0	0	35	0.94
32810045--32810114	33	2.1	33	84	10	90	60	7	2	30	1.38
32810139--32810208	29	2.4	29	79	9	79	51	7	0	41	1.29
32813218--32813334	59	2.0	59	89	3	182	25	11	20	41	1.86
32814547--32814580	18	2.0	18	88	11	54	44	0	0	55	0.99
32814545--32814591	19	2.5	18	80	13	51	53	0	2	44	1.12
32833907--32833937	8	3.9	8	95	0	53	51	16	0	32	1.44
32837213--32837371	20	7.9	20	76	4	97	44	12	5	37	1.64
32837213--32837344	60	2.2	59	78	9	142	46	13	4	35	1.64
32837304--32837387	40	2.1	40	84	4	107	41	8	3	46	1.51
32837683--32837734	20	2.6	20	78	0	59	42	11	5	40	1.65
32837823--32837920	40	2.5	40	80	8	112	48	10	4	36	1.56
32837837--32837897	20	3.1	19	73	4	50	47	6	4	40	1.51
32837945--32838009	20	3.3	20	75	10	62	44	7	6	41	1.58
32837859--32838037	78	2.3	79	82	4	211	44	11	5	38	1.64
32837901--32838038	39	3.5	39	76	6	154	43	12	5	38	1.66
32837908--32838091	79	2.3	78	81	7	201	41	13	5	39	1.68
32839292--32839350	20	2.9	20	80	10	66	45	11	5	37	1.63
32839321--32839452	40	3.3	38	75	8	120	45	14	4	35	1.65
32839321--32839498	80	2.2	80	85	4	225	46	14	4	34	1.65
32839348--32839450	20	5.2	20	67	4	73	45	15	3	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32839532--32839661	62	2.1	61	97	1	242	37	6	3	52	1.44
32839532--32839680	62	2.4	62	91	4	203	39	8	4	48	1.52
32842670--32842704	15	2.5	13	90	9	52	40	0	0	60	0.97
32842670--32842711	14	3.0	15	90	10	63	40	0	0	59	0.97
32843326--32843372	20	2.4	19	83	13	60	38	0	4	57	1.18
32843585--32843630	17	2.6	18	83	10	58	54	4	6	34	1.46
32844777--32844825	25	2.0	25	100	0	98	36	12	10	40	1.77
32849379--32849411	16	2.0	17	88	5	50	54	0	0	45	0.99
32849445--32849510	23	3.0	23	68	4	55	43	1	4	50	1.32
32856562--32858359	988	1.8	973	85	4	2556	36	14	13	34	1.86
32858560--32858609	20	2.5	20	83	3	57	64	2	26	8	1.32
32859394--32859446	24	2.2	24	83	3	63	28	13	15	43	1.84
32859968--32860083	50	2.3	49	80	7	135	46	12	8	32	1.71
32860145--32860207	31	2.0	32	84	9	85	46	15	11	26	1.80
32860369--32860578	111	1.9	111	92	2	350	27	19	20	32	1.97
32861741--32861819	25	3.0	27	78	12	94	43	11	6	39	1.66
32868058--32868370	166	1.9	166	85	1	437	29	18	11	40	1.86
32879802--32879843	21	2.0	21	95	0	75	69	0	0	30	0.89
32879801--32879885	12	7.4	12	69	26	51	62	1	2	34	1.16
32879847--32879892	16	3.1	15	84	9	58	56	0	4	39	1.19
32879847--32879886	16	2.5	16	87	0	62	55	0	5	40	1.22
32879905--32879948	21	2.1	21	100	0	88	52	9	0	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32879905--32879940	12	3.2	12	77	22	51	52	11	0	36	1.37
32883287--32883317	15	2.1	15	100	0	62	48	19	19	12	1.81
32884188--32884218	16	1.9	16	93	0	53	51	3	3	41	1.34
32886750--32886812	30	2.1	30	85	8	83	46	1	0	52	1.10
32889967--32890114	23	6.5	22	85	3	152	11	21	24	42	1.86
32908812--32908869	27	2.1	27	96	0	107	53	12	6	27	1.63
32924500--32924542	21	2.0	21	86	8	61	48	4	0	46	1.22
32930942--32930986	20	2.3	19	80	3	54	37	0	20	42	1.52
32931300--32931347	20	2.4	18	78	18	51	50	0	2	47	1.12
32931620--32931658	19	2.1	19	100	0	78	41	15	5	38	1.69
32932312--32932364	20	2.9	17	76	17	52	30	1	1	66	1.13
32934607--32934631	2	12.5	2	100	0	50	52	0	0	48	1.00
32935649--32935699	20	2.6	20	84	9	61	58	1	0	39	1.09
32938215--32938245	5	6.2	5	96	0	53	77	0	22	0	0.77
32950982--32951023	20	2.1	20	86	0	57	45	7	0	47	1.30
32951061--32951102	20	2.1	20	86	8	59	38	11	0	50	1.40
32951167--32951224	20	2.9	20	74	7	64	39	15	0	44	1.47
32951167--32951243	40	1.9	40	82	10	95	40	12	1	45	1.51
32952102--32952129	6	4.7	6	100	0	56	53	28	0	17	1.44
32955977--32956020	14	2.8	16	80	16	56	52	0	0	47	1.00
32957251--32957296	23	2.0	24	82	4	58	52	4	2	41	1.33
32957276--32957308	17	1.9	17	100	0	66	66	3	0	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32959325--32959382	29	2.0	30	89	3	91	50	15	6	27	1.70
32963512--32963713	99	2.0	99	97	0	377	39	20	14	25	1.91
32964100--32964180	39	2.1	39	100	0	162	39	30	4	24	1.77
32965972--32966011	21	1.9	21	90	10	64	52	15	7	25	1.68
32967050--32967080	7	4.4	7	95	0	53	83	0	16	0	0.64
32969478--32969536	31	1.9	31	82	0	73	59	5	3	32	1.36
32980061--32980117	30	1.9	30	85	7	80	33	15	14	36	1.88
32980404--32980443	21	1.9	21	84	0	53	40	2	0	57	1.12
32980410--32980475	36	1.9	33	84	9	87	36	3	0	60	1.12
32982760--32982784	11	2.3	11	100	0	50	24	0	8	68	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144