genome.fa.s7.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  51  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10380833--10381638	402	2.0	401	85	1	1078	39	14	17	28	1.89
10381359--10381855	215	2.3	216	79	6	544	39	13	17	29	1.88
10381793--10381911	62	1.9	62	82	3	150	43	18	16	21	1.88
10382067--10382190	62	2.0	62	93	0	212	36	16	20	26	1.94
10381575--10382411	278	3.0	275	82	4	934	40	14	16	27	1.88
10382149--10382625	215	2.2	216	82	5	599	38	14	16	30	1.89
10382561--10382687	62	2.0	62	89	0	191	37	14	18	29	1.91
10382350--10383798	278	5.2	277	91	1	2210	39	14	17	28	1.89
10381851--10382903	494	2.1	495	84	4	1392	39	14	16	28	1.89
10381297--10383181	771	2.4	769	88	2	2689	39	14	17	28	1.89
10383117--10383243	62	2.0	62	89	3	193	36	16	18	29	1.92
10383395--10383521	62	2.0	62	87	3	184	38	16	17	27	1.91
10383672--10383860	62	3.0	62	88	0	270	39	15	17	26	1.91
10383395--10384200	340	2.4	339	88	1	1186	39	15	18	27	1.90
10384012--10384259	62	4.0	62	95	0	424	37	15	18	27	1.92
10383672--10384477	402	2.0	401	85	2	1089	38	15	18	27	1.90
10384198--10384688	215	2.3	216	79	6	548	40	13	17	28	1.88
10384628--10384749	62	2.0	61	85	4	165	40	18	18	22	1.91
10384905--10385152	62	4.0	62	87	0	352	38	16	19	26	1.92
10383734--10385927	894	2.5	894	89	1	3389	39	14	17	28	1.89
10385095--10385587	215	2.3	216	82	5	613	38	13	17	30	1.88
10385523--10385649	62	2.0	62	89	0	191	37	14	18	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10385312--10386204	278	3.2	275	87	2	1279	39	13	17	29	1.88
10386078--10386266	62	3.0	62	89	0	279	40	14	16	28	1.88
10385801--10386576	339	2.3	339	86	2	1094	39	14	18	27	1.90
10386417--10386664	62	4.0	62	86	2	336	37	16	19	26	1.93
10386078--10386884	401	2.0	403	86	2	1113	38	15	17	28	1.90
10386607--10387100	215	2.3	216	81	4	559	38	13	17	30	1.88
10387036--10387162	62	2.0	62	89	0	191	37	14	17	30	1.89
10386825--10387441	280	2.2	277	87	3	891	38	14	17	29	1.90
10387320--10387565	62	4.0	62	89	5	374	38	15	17	28	1.91
10387322--10387565	123	2.0	123	90	4	384	38	15	17	28	1.90
10387678--10387863	62	3.0	62	91	0	291	38	16	19	25	1.92
10388174--10388545	62	6.0	62	83	3	408	37	15	20	26	1.92
10388174--10388531	186	1.9	186	87	1	520	37	15	20	26	1.92
10388738--10388921	62	3.0	62	91	2	300	36	17	19	26	1.93
10389075--10389243	61	2.7	61	82	4	207	37	17	18	25	1.93
10388620--10389813	339	3.5	335	83	5	1476	38	15	18	27	1.91
10389414--10389599	62	3.0	60	83	9	223	37	15	21	25	1.93
10389964--10390211	62	4.0	61	81	5	261	37	13	18	30	1.89
10389964--10390186	121	1.8	124	81	5	283	38	13	19	29	1.89
10390367--10390549	60	3.0	60	84	5	224	36	18	16	28	1.93
10390388--10390549	61	2.6	63	84	9	219	38	17	16	28	1.91
10390662--10390825	61	2.6	63	88	1	233	39	16	19	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10390678--10390825	63	2.4	61	87	2	206	40	16	18	23	1.91
10390678--10390864	63	3.0	63	82	4	157	40	17	16	26	1.89
10390339--10391478	299	3.9	296	75	14	1089	39	15	16	28	1.90
10391000--10391122	63	2.0	61	90	6	194	38	17	16	27	1.91
10391232--10391414	59	3.0	62	85	5	257	39	17	18	25	1.92
10390427--10392243	572	3.2	571	83	8	2174	38	15	17	28	1.90
10392117--10392300	64	2.9	64	88	3	268	35	16	20	27	1.94
10392460--10392642	60	3.0	61	81	7	210	37	18	19	24	1.94
10391568--10393543	342	5.8	338	80	7	2041	38	15	17	28	1.90
10392802--10392973	62	2.8	62	84	4	240	38	15	18	26	1.91
10391639--10393489	686	2.7	681	86	5	2411	37	14	18	29	1.90
10393145--10393321	62	2.9	62	86	4	241	37	16	17	28	1.91
10393145--10393329	61	3.0	62	85	4	232	37	16	17	28	1.91
10394007--10394252	60	4.0	61	85	8	295	27	16	16	39	1.89
10394402--10394616	61	3.5	62	82	5	224	29	18	13	38	1.90
10393789--10394905	396	2.8	392	81	10	1215	28	17	15	38	1.90
10394577--10395136	274	2.0	273	84	6	751	30	17	14	38	1.89
10394858--10395351	215	2.3	216	80	7	542	30	16	13	38	1.88
10395290--10395531	60	4.0	62	86	6	327	28	18	16	37	1.92
10395682--10395898	62	3.5	62	88	3	285	29	17	14	38	1.89
10396079--10396204	62	2.0	61	87	1	180	26	18	18	36	1.94
10395806--10396418	275	2.2	272	87	4	885	28	17	14	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10396574--10396819	63	4.0	62	87	2	327	28	17	15	37	1.91
10396354--10397096	400	1.9	403	84	4	1027	28	17	14	38	1.90
10396970--10397096	62	2.0	62	89	0	191	27	18	18	35	1.94
10396695--10397311	277	2.2	275	88	2	891	29	17	13	39	1.89
10395469--10397985	893	2.8	889	92	3	4026	28	17	14	38	1.90
10397032--10397527	215	2.3	216	83	4	637	29	17	13	39	1.88
10397466--10397712	62	4.0	62	88	3	363	26	19	16	38	1.92
10397466--10397712	123	2.0	124	88	2	363	26	19	16	38	1.92
10397859--10398107	62	4.0	62	91	1	358	29	18	15	36	1.92
10398258--10398384	62	2.0	62	87	0	182	27	18	18	35	1.94
10397983--10398598	277	2.2	275	89	2	934	28	17	14	39	1.89
10398754--10398967	62	3.5	62	92	1	340	27	17	14	40	1.89
10399149--10399275	62	2.0	62	89	0	191	26	18	18	35	1.95
10398535--10399275	398	1.9	402	85	3	1057	28	17	14	38	1.90
10397648--10399827	891	2.5	890	94	2	3767	28	17	14	39	1.89
10399211--10399705	215	2.3	215	84	4	633	29	17	13	38	1.88
10399644--10399827	62	3.0	62	88	1	264	27	17	15	39	1.90
10399978--10400102	60	2.0	61	87	3	180	28	18	18	35	1.94
10400257--10400502	62	4.0	62	90	1	343	28	17	15	38	1.90
10400653--10400779	62	2.0	62	87	0	182	27	18	18	36	1.94
10399978--10400779	399	2.0	399	86	2	1119	28	17	15	38	1.90
10400378--10400994	278	2.2	275	88	2	916	28	17	14	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10400715--10401210	215	2.3	216	84	4	635	29	16	13	39	1.88
10401149--10401458	62	5.0	62	90	1	469	27	18	14	39	1.90
10401604--10401852	62	4.0	62	88	1	331	29	17	15	37	1.91
10401208--10402129	399	2.3	396	88	4	1374	28	17	15	38	1.90
10402003--10402129	62	2.0	62	89	0	191	26	18	18	35	1.95
10402305--10402741	62	7.0	62	88	0	622	26	18	15	39	1.90
10402677--10403172	215	2.3	215	83	4	622	30	16	13	38	1.88
10403111--10403358	62	4.0	62	90	0	370	27	19	15	37	1.92
10403516--10403700	62	3.0	62	90	0	280	25	18	17	38	1.93
10403934--10404180	62	4.0	62	90	1	352	26	18	14	39	1.90
10403934--10404180	123	2.0	123	88	0	368	26	18	14	39	1.90
10404339--10404520	62	2.9	61	82	4	231	25	17	17	40	1.90
10402985--10404625	820	2.0	822	93	0	2788	28	18	14	38	1.90
10404456--10404929	215	2.2	214	85	7	629	31	17	12	38	1.87
10404889--10405073	62	3.0	62	88	2	248	28	20	14	37	1.91
10404116--10405285	554	2.1	554	85	3	1602	29	17	14	39	1.89
10403996--10406846	893	3.2	893	98	0	5488	29	17	13	39	1.89
10405232--10405413	62	2.9	61	82	4	231	25	17	17	40	1.90
10405009--10406177	554	2.1	554	85	3	1593	29	17	14	39	1.89
10405349--10405822	215	2.2	214	85	7	629	31	17	12	38	1.87
10405782--10405966	62	3.0	62	88	2	248	28	20	14	37	1.91
10405564--10406515	339	2.8	335	85	4	1198	29	17	13	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10406124--10406305	62	2.9	61	82	4	231	25	17	17	40	1.90
10406241--10406735	215	2.3	213	84	7	626	30	17	13	37	1.88
10406681--10406921	62	3.9	62	89	0	365	26	19	15	38	1.91
10407079--10407263	62	3.0	62	90	0	280	25	18	17	38	1.93
10407497--10407743	62	4.0	61	87	2	332	26	18	14	40	1.89
10407497--10407743	123	2.0	123	87	0	350	26	18	14	40	1.89
10407895--10408083	62	3.0	61	83	6	229	26	16	16	40	1.89
10408019--10408510	215	2.3	212	83	5	627	31	17	12	38	1.87
10408449--10408696	62	4.0	62	93	0	406	27	19	15	37	1.92
10406548--10408185	820	2.0	809	91	2	2018	28	18	14	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144