genome.fa.s7.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  46  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10230528--10231019	215	2.3	216	81	5	579	29	18	14	38	1.89
10230958--10231137	62	2.9	62	94	0	297	27	18	16	38	1.91
10231316--10231471	62	2.5	62	86	1	206	26	20	16	37	1.93
10231408--10231900	213	2.3	215	82	4	611	29	18	13	38	1.90
10231839--10232018	62	2.9	62	89	0	288	23	20	17	38	1.93
10231622--10232357	339	2.2	338	85	3	955	27	18	15	38	1.92
10232175--10232419	62	4.0	62	85	1	339	26	20	16	37	1.93
10231858--10232758	401	2.2	401	92	0	1471	25	20	16	37	1.93
10232611--10232758	62	2.4	62	84	0	179	25	20	16	37	1.93
10232266--10232979	339	2.1	339	84	3	909	27	19	15	37	1.92
10232700--10233195	215	2.3	216	82	3	615	30	17	14	37	1.90
10233141--10233313	62	2.8	62	95	0	301	25	19	16	38	1.92
10232361--10233528	555	2.1	555	83	4	1446	27	19	15	37	1.92
10232929--10233997	340	3.2	338	82	4	1235	27	19	14	38	1.91
10233770--10234421	62	10.6	62	91	1	1053	26	19	15	39	1.91
10233770--10234421	184	3.5	185	91	2	1037	26	19	15	39	1.91
10233782--10234421	246	2.6	246	95	0	1118	26	19	15	39	1.91
10234608--10234766	62	2.6	62	83	1	176	25	22	15	36	1.94
10234241--10234954	339	2.1	338	83	4	911	27	18	14	39	1.90
10234706--10235200	218	2.3	216	81	6	572	29	18	14	38	1.90
10235146--10235318	62	2.8	62	93	0	292	27	20	15	36	1.93
10235476--10235720	62	4.0	62	84	3	323	26	18	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10234919--10235664	340	2.2	341	83	3	914	28	18	15	37	1.91
10235140--10236066	402	2.3	402	91	0	1496	26	19	15	38	1.92
10235909--10236066	62	2.5	62	85	0	208	25	18	16	39	1.91
10235542--10236281	340	2.2	339	84	4	950	26	18	15	39	1.91
10236003--10236496	215	2.3	216	81	5	545	30	17	14	38	1.89
10236436--10236800	62	5.9	62	91	0	534	26	19	15	38	1.92
10236987--10237146	62	2.6	62	88	0	221	26	19	16	37	1.93
10236618--10237418	340	2.4	338	85	4	1135	27	18	14	38	1.90
10237298--10237418	62	2.0	62	94	0	215	27	18	14	39	1.90
10237024--10237708	278	2.5	277	84	3	833	27	18	14	38	1.90
10237302--10237979	340	2.0	339	85	5	924	26	18	15	39	1.91
10237605--10237764	62	2.6	62	89	0	230	24	20	18	37	1.94
10236680--10237979	618	2.1	618	91	2	2094	27	18	15	38	1.90
10237706--10238195	215	2.3	216	83	4	625	29	17	14	38	1.90
10238141--10238363	122	1.8	124	91	1	369	25	18	16	39	1.91
10238141--10238363	62	3.6	62	92	2	369	25	18	16	39	1.91
10238531--10238654	62	2.0	62	90	3	196	25	19	17	37	1.93
10238255--10238872	278	2.2	276	84	3	794	27	18	15	38	1.91
10239034--10239195	61	2.6	62	93	1	272	25	17	16	40	1.90
10239367--10239735	62	6.0	62	90	2	543	25	20	15	37	1.92
10239367--10239735	122	3.0	122	91	3	555	25	20	15	37	1.92
10239363--10239734	184	2.0	185	89	3	572	26	19	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10239849--10240145	62	4.6	62	80	10	342	25	18	15	39	1.91
10239871--10240013	75	1.9	75	95	0	259	27	17	16	38	1.91
10240098--10240584	215	2.2	217	82	5	601	28	18	15	37	1.91
10240530--10240702	62	2.8	61	90	3	265	26	18	15	39	1.90
10240861--10241231	62	6.0	62	88	2	534	25	19	16	38	1.93
10240320--10241049	340	2.2	340	83	2	905	27	18	16	37	1.92
10240887--10241232	184	1.9	184	93	1	595	25	19	16	38	1.92
10241345--10241641	62	4.6	62	80	10	342	25	18	15	39	1.91
10241367--10241509	75	1.9	75	95	0	259	27	17	16	38	1.91
10241828--10241987	62	2.6	62	87	2	214	25	20	17	37	1.94
10241459--10242199	340	2.2	340	85	4	994	26	18	15	39	1.91
10241923--10242418	215	2.3	216	83	3	624	29	18	14	38	1.89
10242357--10242785	62	6.7	62	86	7	601	25	19	15	39	1.91
10242400--10242541	75	1.9	75	97	0	266	27	19	14	38	1.91
10242357--10242603	137	1.8	137	94	0	440	25	19	15	39	1.91
10242588--10242700	60	2.0	53	88	10	154	26	17	17	38	1.92
10242357--10242785	122	3.4	124	89	5	610	25	19	15	39	1.91
10242982--10243140	62	2.6	61	83	1	192	26	19	14	39	1.90
10242615--10243694	339	3.2	338	84	3	1320	27	18	14	39	1.89
10243320--10243479	62	2.6	62	86	0	212	27	20	15	36	1.92
10243421--10243910	215	2.3	216	83	3	612	28	18	14	38	1.91
10243849--10244028	62	2.9	62	91	0	288	25	18	17	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10243634--10244730	340	3.2	338	81	5	1148	26	18	15	38	1.91
10244186--10244374	62	3.0	61	77	6	200	26	18	16	38	1.92
10244490--10244969	62	7.6	62	88	7	687	25	20	15	38	1.91
10244512--10244653	75	1.9	75	94	2	250	26	19	14	38	1.91
10244587--10244969	184	2.1	186	94	2	664	26	20	14	38	1.91
10245156--10245315	62	2.6	62	84	0	203	25	19	16	38	1.92
10244789--10245870	340	3.2	338	88	2	1537	26	18	15	39	1.91
10245496--10245655	62	2.6	62	88	0	230	25	19	17	38	1.93
10245591--10246086	215	2.3	216	84	4	653	29	17	14	38	1.89
10246025--10246264	122	2.0	124	89	3	378	27	17	16	38	1.91
10246025--10246264	62	3.9	62	91	3	378	27	17	16	38	1.91
10246084--10246824	340	2.2	336	82	6	861	27	17	15	39	1.90
10246451--10246610	62	2.6	63	85	5	220	26	20	15	37	1.93
10246546--10247040	214	2.3	215	82	5	599	29	17	14	38	1.90
10246979--10247158	62	2.9	62	92	0	297	27	19	15	37	1.92
10247345--10247504	62	2.6	62	84	4	214	26	20	16	37	1.93
10246761--10247719	340	2.8	336	81	4	1111	28	18	15	38	1.90
10247440--10247935	215	2.3	216	84	2	667	29	17	14	38	1.90
10247874--10248053	62	2.9	62	91	0	288	26	19	16	37	1.92
10246087--10249164	895	3.5	894	92	2	4797	27	18	15	38	1.91
10247100--10248275	555	2.1	555	82	4	1411	27	18	15	38	1.91
10248240--10248399	62	2.6	61	81	6	196	25	20	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10247657--10248604	340	2.8	335	82	4	1111	27	18	15	37	1.91
10248336--10248826	216	2.3	214	84	3	605	27	18	14	39	1.90
10248787--10248926	62	2.3	63	82	2	167	22	20	14	42	1.88
10248932--10249403	240	2.0	238	83	5	605	29	18	15	37	1.91
10249339--10249527	62	3.0	62	88	0	261	26	18	15	39	1.90
10249678--10249804	62	2.0	62	87	0	182	29	17	14	37	1.90
10249164--10249788	339	1.8	340	86	2	898	27	18	15	39	1.90
10249401--10251683	278	8.2	278	80	8	2308	27	17	14	40	1.89
10249956--10250082	62	2.0	62	89	0	191	29	18	15	36	1.92
10250234--10250360	62	2.0	62	87	0	182	29	17	14	37	1.90
10250512--10250638	62	2.0	62	87	0	182	29	18	14	37	1.90
10250574--10251071	215	2.3	217	82	4	632	30	16	14	38	1.88
10251010--10251195	62	3.0	62	87	0	273	25	19	17	37	1.94
10251438--10251903	215	2.2	214	79	5	521	28	18	13	39	1.88
10251842--10252151	62	5.0	62	93	0	521	27	18	15	38	1.92
10252303--10252491	62	3.0	61	85	3	243	27	17	16	37	1.92
10251963--10253448	340	4.4	340	87	1	2009	28	17	15	39	1.90
10251963--10253448	681	2.2	678	86	2	2108	28	17	15	39	1.90
10252644--10252832	62	3.0	62	85	0	261	29	17	16	37	1.92
10252984--10253172	62	3.0	62	85	3	229	28	18	14	38	1.90
10253600--10253726	62	2.0	62	90	0	200	29	18	15	37	1.92
10253046--10254215	278	4.2	277	91	1	1715	28	17	14	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10253878--10254004	62	2.0	62	90	0	200	29	18	15	37	1.92
10253046--10254215	554	2.1	554	88	2	1715	28	17	14	39	1.88
10253940--10254436	215	2.3	216	82	5	621	30	16	13	38	1.88
10254375--10254620	122	2.0	124	83	4	311	26	19	16	38	1.92
10254375--10254620	62	4.0	61	82	6	291	26	19	16	38	1.92
10255266--10255450	62	3.0	62	94	1	318	27	18	16	37	1.92
10253600--10257240	893	4.1	893	83	6	4770	28	17	14	39	1.89
10255602--10255790	62	3.0	62	83	0	234	28	17	17	37	1.92
10255726--10256224	215	2.3	217	84	5	643	30	16	14	39	1.88
10256163--10256410	62	4.0	62	87	3	347	27	18	16	37	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144