genome.fa.s7.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  29  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7188955--7188991	18	2.1	18	94	0	65	18	59	0	21	1.38
7188924--7189028	54	1.9	54	83	7	133	24	52	1	20	1.57
7188999--7189050	18	2.6	21	79	17	74	25	53	1	19	1.55
7188929--7189044	54	2.1	54	81	6	128	25	52	1	19	1.56
7189160--7189195	18	2.0	18	94	0	63	19	63	0	16	1.30
7189084--7189230	60	2.4	63	78	16	189	27	53	2	17	1.54
7188897--7189285	204	1.9	198	91	3	634	26	51	1	19	1.56
7189271--7189317	15	2.8	17	78	15	53	29	57	2	10	1.44
7190926--7191014	44	2.0	43	89	2	133	44	32	0	22	1.53
7198265--7198305	20	2.0	20	90	0	64	51	9	12	26	1.70
7201017--7201083	32	2.1	33	91	2	109	25	11	4	58	1.52
7201549--7201617	36	1.9	36	100	0	138	18	33	7	40	1.78
7202189--7202249	30	2.1	29	84	6	79	55	0	0	44	0.99
7208493--7208609	58	2.0	58	98	0	225	32	13	21	32	1.92
7213350--7213401	21	2.5	21	87	6	79	19	17	28	34	1.94
7214458--7214498	22	1.9	21	90	5	64	19	7	0	73	1.07
7220488--7220525	20	1.9	20	94	0	67	13	13	23	50	1.76
7221977--7222022	14	3.1	15	82	17	60	32	8	4	54	1.51
7221977--7222021	16	3.1	14	84	15	56	33	8	4	53	1.52
7222896--7223098	43	4.7	43	86	1	192	21	26	24	27	1.99
7222915--7223096	43	4.2	43	88	1	240	20	28	24	27	1.99
7223410--7223449	21	1.9	21	94	0	71	0	45	22	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7223445--7223592	66	2.2	66	87	2	217	16	23	15	44	1.85
7224408--7224437	14	2.1	14	100	0	60	36	23	0	40	1.55
7225198--7225223	12	2.2	12	100	0	52	61	0	23	15	1.33
7226282--7226595	41	7.6	41	81	2	315	25	25	24	24	2.00
7226290--7226676	82	4.8	80	79	6	366	23	25	24	26	2.00
7226291--7226675	123	3.1	121	82	4	425	23	25	24	26	2.00
7228089--7228131	12	3.5	12	81	6	50	32	0	6	60	1.23
7228085--7228116	12	2.6	13	85	14	50	34	0	6	59	1.23
7229177--7229292	61	1.9	62	82	5	146	22	15	12	50	1.77
7229521--7229582	32	2.0	32	90	3	99	48	11	14	25	1.77
7231790--7231823	17	2.0	17	88	0	50	35	0	11	52	1.38
7231811--7231875	17	3.9	17	75	4	60	43	0	3	53	1.16
7231819--7231895	33	2.3	33	81	2	82	41	2	5	50	1.38
7232563--7232607	19	2.4	19	81	7	56	37	0	4	57	1.19
7239095--7239152	13	4.5	13	75	14	57	17	3	0	79	0.87
7239100--7239156	4	14.8	4	73	26	52	17	3	0	78	0.88
7240597--7240641	19	2.4	19	81	7	56	37	0	4	57	1.19
7242105--7242156	3	17.0	3	80	4	50	59	1	0	38	1.08
7242112--7242156	9	5.2	9	81	10	58	60	0	0	40	0.97
7242106--7242157	16	3.1	16	81	10	59	61	1	0	36	1.07
7242964--7243301	162	2.1	162	95	1	606	25	17	13	43	1.85
7243361--7243708	29	12.0	27	67	20	125	36	26	2	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7243432--7243746	59	5.4	59	88	3	424	35	27	1	35	1.67
7243519--7243740	29	7.4	31	67	20	125	34	26	2	36	1.69
7243432--7243782	59	5.9	59	86	5	390	34	28	2	34	1.72
7243430--7243782	118	3.0	117	82	5	444	34	28	2	34	1.72
7255661--7256128	76	6.1	76	95	1	792	33	15	18	32	1.92
7255661--7256128	153	3.1	152	94	1	792	33	15	18	32	1.92
7256192--7256286	50	1.9	50	86	4	138	37	18	18	24	1.94
7256532--7256565	17	2.0	17	88	0	50	35	0	11	52	1.38
7256553--7256615	17	3.8	16	79	6	63	42	1	4	50	1.32
7256561--7256637	33	2.3	33	81	2	82	41	3	6	48	1.47
7257475--7257526	3	17.0	3	80	4	50	59	1	0	38	1.08
7257482--7257526	9	5.2	9	81	10	58	60	0	0	40	0.97
7257476--7257527	16	3.1	16	81	10	59	61	1	0	36	1.07
7258587--7258857	29	9.3	29	70	16	161	36	26	1	35	1.68
7258646--7258900	59	4.3	59	87	2	361	33	28	1	36	1.69
7258646--7258901	117	2.2	118	90	3	392	33	28	1	35	1.69
7258671--7258886	29	7.4	28	69	20	88	33	28	1	36	1.68
7258646--7258937	117	2.5	117	86	3	374	32	28	3	35	1.74
7258646--7258937	59	5.0	59	86	2	313	32	28	3	35	1.74
7261970--7262009	21	1.9	21	85	10	55	32	17	20	30	1.95
7273082--7273392	158	2.0	158	88	1	462	24	23	22	29	1.99
7275733--7275781	21	2.3	21	82	0	53	38	24	0	36	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7275847--7275886	17	2.4	17	86	0	53	35	10	15	40	1.80
7278133--7278227	23	4.0	23	74	16	95	12	26	23	37	1.90
7278608--7278632	2	12.5	2	100	0	50	52	0	0	48	1.00
7284093--7284294	30	6.7	30	93	0	323	36	23	2	36	1.70
7284213--7284376	30	5.6	29	75	18	103	34	25	3	36	1.74
7284093--7284369	60	4.7	58	84	7	267	35	24	3	36	1.73
7284093--7284333	90	2.7	88	86	5	297	35	24	3	36	1.73
7284273--7284376	29	3.6	28	72	18	97	32	26	3	36	1.75
7296470--7296589	31	3.7	31	69	16	91	34	19	18	28	1.95
7296420--7296606	69	2.7	70	90	3	299	33	19	19	27	1.96
7296489--7296717	117	1.9	118	84	2	309	36	17	19	26	1.94
7296607--7297110	68	7.1	69	75	12	294	35	16	19	27	1.94
7296440--7297151	186	3.9	186	81	9	800	35	16	19	28	1.94
7296812--7297103	37	8.4	37	70	14	208	36	14	19	29	1.92
7296947--7297065	31	3.7	31	71	18	109	36	18	16	28	1.93
7296812--7297031	105	2.1	105	90	1	343	36	14	19	29	1.92
7297441--7297510	17	4.0	17	80	7	77	34	0	2	62	1.10
7298219--7298279	19	3.1	19	76	4	68	45	0	6	47	1.28
7298219--7298276	13	4.4	14	72	14	52	44	0	6	48	1.29
7299401--7299577	30	5.9	30	95	2	304	36	25	2	35	1.71
7299401--7299577	59	3.0	59	94	1	318	36	25	2	35	1.71
7299401--7299577	89	2.0	89	95	3	320	36	25	2	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7299563--7299665	29	3.6	28	70	18	86	34	26	2	35	1.72
7302743--7302767	6	4.2	6	100	0	50	68	0	0	32	0.90
7304220--7304397	97	1.9	95	95	2	320	33	18	5	43	1.72
7310840--7310900	29	2.1	30	81	9	72	45	0	1	52	1.10
7323289--7323334	15	3.1	15	78	9	51	69	0	0	30	0.89
7324692--7324717	7	3.7	7	100	0	52	0	0	11	88	0.52
7324727--7324856	60	2.2	60	84	6	167	18	21	16	43	1.88
7325968--7326010	16	2.6	17	86	13	63	55	0	0	44	0.99
7325968--7326019	18	3.0	18	89	10	74	55	0	0	44	0.99
7326242--7326284	15	2.8	15	82	6	50	58	4	9	27	1.49
7327138--7327180	23	1.9	22	85	4	59	18	0	9	72	1.11
7328028--7328073	14	3.1	15	71	22	51	60	8	0	30	1.26
7328026--7328075	16	3.2	16	73	21	61	60	8	0	32	1.26
7328156--7328221	17	3.9	17	79	0	78	36	1	4	57	1.28
7330155--7330407	29	8.6	30	79	6	239	37	23	3	35	1.71
7330161--7330407	59	4.2	58	82	4	271	37	23	2	36	1.70
7330161--7330438	58	4.7	59	82	6	181	36	23	3	35	1.73
7332638--7332722	43	2.0	43	83	4	109	30	12	10	45	1.76
7333287--7333468	45	4.0	45	96	0	319	32	28	21	18	1.96
7333700--7333757	14	4.1	14	80	8	64	51	27	1	18	1.56
7333700--7333758	20	2.8	20	75	17	57	50	28	1	18	1.56
7333712--7333780	28	2.5	27	74	6	66	49	24	4	21	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7336781--7336824	4	11.0	4	85	0	61	0	27	0	72	0.85
7338703--7338814	55	2.0	55	84	3	145	24	17	15	42	1.88
7345880--7345990	55	2.0	54	84	1	141	24	15	14	45	1.83
7353330--7353405	26	3.0	25	76	16	75	31	3	1	63	1.21
7355442--7355466	2	12.5	2	100	0	50	48	0	0	52	1.00
7359978--7360054	20	3.8	19	73	21	68	3	3	23	68	1.23
7359978--7360059	40	2.0	41	86	6	114	3	4	23	68	1.25
7360049--7360099	23	2.2	23	89	0	75	9	7	13	68	1.38
7360072--7360131	31	1.9	31	89	0	93	6	1	16	75	1.10
7363235--7363348	59	1.9	59	87	0	165	27	15	11	45	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144