genome.fa.s7.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  19  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4738055--4738098	12	3.4	12	85	14	61	45	0	2	52	1.13
4738055--4738093	14	2.9	14	92	7	64	46	0	0	53	1.00
4738025--4738233	94	2.2	94	85	10	273	41	0	5	52	1.29
4738067--4738163	42	2.4	42	75	3	99	40	1	6	52	1.33
4738149--4738181	12	2.5	13	90	9	50	54	0	0	45	0.99
4740735--4740876	42	3.4	41	82	2	158	20	27	19	32	1.97
4740735--4740846	41	2.7	41	87	1	143	20	26	20	32	1.97
4742852--4742962	56	2.0	56	81	0	132	18	27	20	32	1.97
4742908--4743005	41	2.4	41	85	0	133	17	32	19	30	1.95
4745701--4745742	21	2.0	21	86	9	59	57	14	7	21	1.61
4749411--4749578	67	2.5	66	85	5	232	37	16	23	23	1.93
4752181--4752205	3	8.3	3	100	0	50	0	0	32	68	0.90
4756978--4757318	140	2.4	141	79	7	355	41	9	13	35	1.77
4763165--4763206	20	2.2	20	82	4	50	26	28	2	42	1.67
4763342--4763416	17	4.3	18	83	6	93	38	0	4	57	1.18
4763342--4763431	35	2.5	35	80	5	101	42	1	3	53	1.24
4763356--4763444	6	15.0	6	72	10	58	44	1	2	51	1.21
4763356--4763444	11	7.5	12	73	7	58	44	1	2	51	1.21
4765191--4765506	29	10.7	31	73	14	190	35	22	2	38	1.69
4765191--4765506	30	10.7	29	74	10	232	35	22	2	38	1.69
4765189--4765652	58	7.9	59	78	9	350	33	23	4	38	1.76
4765430--4765683	117	2.2	117	82	7	311	30	22	7	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4765552--4765644	29	3.2	29	69	11	82	35	24	7	32	1.84
4765494--4765682	58	3.2	58	78	8	213	30	22	7	39	1.82
4771290--4771616	50	6.6	49	69	10	148	40	19	25	14	1.90
4771292--4771616	151	2.2	150	89	2	494	40	19	24	15	1.90
4771828--4772075	78	3.2	78	83	2	284	25	28	19	25	1.99
4771840--4772061	39	5.7	39	70	8	119	24	27	21	26	1.99
4772114--4773482	201	6.8	201	89	1	2058	34	18	23	23	1.96
4773835--4773923	18	5.1	17	76	5	79	40	0	4	55	1.20
4773849--4773923	6	12.8	6	72	10	57	40	0	4	56	1.18
4773835--4773943	35	3.1	35	77	7	105	43	0	3	52	1.25
4774841--4774886	23	1.9	24	86	8	67	58	4	8	28	1.47
4775755--4776064	30	10.5	29	76	12	206	36	21	2	38	1.69
4775716--4775980	60	4.5	57	78	7	226	35	21	3	38	1.72
4775711--4775980	90	3.0	90	79	10	220	35	22	3	38	1.72
4775714--4776066	59	6.0	61	79	10	256	36	22	3	37	1.72
4775839--4776211	59	6.3	59	76	10	198	33	22	4	39	1.74
4778166--4778205	19	2.1	19	95	0	71	37	20	12	30	1.89
4778825--4778870	25	1.9	25	86	8	69	32	4	6	56	1.45
4779141--4779182	11	3.9	11	81	3	50	40	0	4	54	1.21
4779143--4779204	17	3.8	17	80	6	74	40	0	4	54	1.22
4779141--4779182	22	2.0	22	85	4	59	40	0	4	54	1.21
4779149--4779201	27	2.0	27	84	0	70	37	0	5	56	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4781173--4781394	30	7.5	31	68	20	136	32	29	4	33	1.76
4781167--4781402	59	4.0	59	85	1	321	31	30	4	33	1.78
4783373--4783480	49	2.2	50	86	3	141	23	24	16	36	1.94
4783397--4783495	49	2.0	49	88	0	144	21	25	19	34	1.96
4785088--4785158	31	2.3	31	90	7	110	32	16	12	38	1.87
4785108--4785173	31	2.1	31	82	2	78	36	13	7	42	1.73
4788276--4788327	21	2.5	20	84	6	68	26	13	19	40	1.88
4791788--4791876	29	3.0	29	73	11	81	33	12	13	40	1.82
4792177--4792558	41	9.3	41	80	4	324	24	28	15	32	1.95
4792177--4792558	82	4.6	82	80	1	399	24	28	15	32	1.95
4792177--4792553	123	3.1	122	82	3	409	24	27	15	32	1.95
4793946--4794069	41	3.0	41	81	0	131	38	13	23	24	1.91
4796569--4796626	26	2.2	26	78	6	64	50	8	0	41	1.33
4796864--4796890	6	4.5	6	100	0	54	55	14	0	29	1.40
4799639--4799672	10	3.3	10	88	8	50	2	11	0	85	0.71
4800252--4800295	18	2.5	17	82	7	52	56	13	11	18	1.66
4800258--4800295	18	2.1	18	90	0	58	55	13	13	18	1.69
4807637--4807925	108	2.7	104	77	6	244	36	18	14	31	1.90
4808299--4808513	59	3.7	58	75	6	202	37	4	21	37	1.73
4808302--4808513	30	7.2	30	76	10	152	36	4	21	37	1.73
4811164--4811455	52	5.6	52	89	0	433	28	13	22	35	1.92
4812216--4812266	21	2.4	21	86	0	66	31	11	25	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4814892--4815123	52	4.5	52	89	3	351	30	13	21	35	1.91
4815866--4815919	21	2.6	21	81	0	63	25	12	29	31	1.93
4820619--4820718	40	2.5	40	83	4	112	42	19	18	21	1.90
4820726--4820887	41	4.0	41	89	3	236	30	20	33	15	1.94
4825407--4825688	43	6.6	42	86	3	368	24	20	26	28	1.99
4825387--4825688	129	2.3	129	87	2	412	24	19	27	28	1.99
4838257--4838324	10	6.6	10	72	12	57	2	14	1	80	0.89
4838256--4838304	21	2.4	21	83	12	66	0	20	2	77	0.87
4838256--4838321	20	3.3	19	78	21	64	3	16	1	78	0.95
4838259--4838324	27	2.5	27	82	7	82	3	15	1	80	0.91
4838389--4838448	28	2.1	28	84	6	77	33	26	3	36	1.73
4844052--4844303	116	2.2	116	88	0	369	36	26	9	26	1.88
4844794--4844894	36	2.8	35	80	4	103	20	28	14	35	1.93
4845792--4845837	20	2.3	20	100	0	92	39	23	8	28	1.84
4848707--4848743	14	2.6	15	87	12	60	78	0	18	2	0.87
4857348--4857390	6	7.2	6	86	0	50	51	0	23	25	1.49
4857492--4857592	38	2.6	40	72	13	102	22	18	27	30	1.98
4859108--4859146	21	1.9	21	85	15	55	71	10	0	17	1.12
4859608--4859855	128	1.9	127	88	2	372	32	16	22	28	1.96
4865022--4865084	13	4.8	13	79	14	76	39	4	17	38	1.71
4865238--4865273	13	2.6	14	86	8	56	38	0	0	61	0.96
4871978--4872007	2	15.5	2	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4873796--4873839	16	2.7	15	78	18	52	47	4	0	47	1.22
4879593--4879647	24	2.3	24	81	9	60	32	5	1	60	1.30
4879620--4879785	58	2.9	57	81	6	183	41	3	2	53	1.29
4879940--4879979	16	2.5	16	91	0	62	27	30	7	35	1.84
4880013--4880040	3	9.3	3	100	0	56	67	0	0	32	0.91
4888876--4888904	13	2.1	14	93	6	51	51	6	0	41	1.28
4888884--4888944	19	3.2	19	68	21	54	47	1	1	49	1.21
4889120--4889199	30	2.7	30	92	0	133	53	0	22	23	1.46
4890320--4890458	72	1.9	72	94	0	242	30	13	21	33	1.92
4900821--4900846	2	13.0	2	100	0	52	50	0	50	0	1.00
4903261--4903319	31	1.9	31	82	6	75	40	1	3	54	1.27
4903633--4904370	45	16.7	45	79	8	633	29	25	17	27	1.98
4905823--4905938	34	3.3	33	80	10	108	25	3	5	66	1.28
4908154--4908225	30	2.4	30	83	0	90	52	1	9	36	1.43
4908172--4908233	30	2.1	30	93	0	106	51	1	11	35	1.47
4908307--4908349	22	1.9	23	81	13	54	65	2	9	23	1.34
4908864--4908974	48	2.3	48	92	0	177	33	10	29	26	1.90
4913412--4913447	11	3.3	11	96	0	63	52	0	47	0	1.00
4914607--4914661	28	2.0	27	82	10	67	41	5	5	47	1.49
4922520--4922557	18	2.1	19	90	5	60	15	10	2	71	1.25
4925821--4925876	24	2.3	24	93	0	94	23	14	10	51	1.73
4940090--4940145	24	2.3	23	81	6	67	32	14	3	50	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4941336--4941404	34	2.0	34	88	0	102	60	17	5	15	1.54
4955380--4955432	27	1.9	28	96	3	99	33	0	9	56	1.32
4955793--4955849	27	2.1	28	86	3	80	52	0	0	47	1.00
4955805--4955883	35	2.3	36	82	12	103	55	1	0	43	1.07
4956818--4956956	74	1.9	74	80	8	167	41	8	6	43	1.61
4960463--4960603	67	2.1	67	95	0	255	48	14	11	25	1.76
4963228--4963300	31	2.4	31	95	0	128	46	12	13	27	1.79
4966167--4966240	23	3.2	23	78	3	69	13	21	22	41	1.88
4966239--4966332	23	4.0	23	75	16	86	12	25	18	43	1.85
4973560--4973654	23	4.4	23	72	17	87	10	22	23	44	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144