genome.fa.s7.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  18  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4490656--4490732	17	4.5	17	80	0	82	58	6	2	32	1.37
4491257--4491576	102	3.1	102	93	0	534	29	16	16	37	1.91
4491535--4491618	42	2.0	42	100	0	168	30	14	14	40	1.85
4491436--4491719	144	2.0	143	96	3	527	30	16	15	37	1.90
4491334--4491821	245	2.0	245	94	1	863	30	16	15	37	1.90
4491770--4492041	50	5.4	49	66	10	161	31	16	15	36	1.91
4491577--4492089	102	5.0	102	94	1	922	30	17	15	36	1.91
4491257--4491923	347	1.9	347	93	0	1147	30	16	15	37	1.90
4492185--4492474	49	5.9	49	77	4	271	13	25	22	37	1.91
4492282--4492474	99	2.0	98	86	1	269	10	26	24	37	1.89
4492280--4492562	148	1.9	147	81	5	338	13	24	23	38	1.91
4492432--4492665	101	2.3	102	81	5	291	16	26	19	37	1.93
4493771--4493837	6	11.5	6	76	12	50	2	11	2	82	0.90
4493771--4493837	29	2.3	28	80	10	73	2	11	2	82	0.90
4499045--4499238	97	2.0	97	86	6	268	38	14	17	29	1.90
4499502--4499655	30	5.2	31	73	17	112	35	3	24	36	1.74
4499494--4499596	30	3.5	31	75	14	117	34	5	27	32	1.81
4499494--4499753	59	4.4	60	79	9	277	34	4	25	36	1.75
4499456--4499578	28	4.2	29	75	11	90	32	7	26	33	1.84
4499661--4499800	29	4.9	28	78	14	126	35	2	25	37	1.68
4499502--4499800	118	2.5	116	82	7	329	35	3	25	36	1.71
4499557--4499800	29	8.3	29	71	17	121	35	2	25	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4499691--4499879	29	6.5	29	72	13	122	35	2	26	35	1.69
4501754--4501840	17	5.1	17	78	0	84	54	6	2	36	1.40
4502416--4502527	56	2.0	56	87	0	161	32	21	20	25	1.98
4502416--4502527	28	4.0	28	83	0	143	32	21	20	25	1.98
4502724--4503405	357	1.9	358	94	0	1213	35	22	4	36	1.76
4504267--4504317	12	4.2	13	85	7	54	50	1	0	47	1.12
4504284--4504316	2	16.5	2	100	0	66	51	0	0	48	1.00
4515737--4515790	20	2.7	19	85	5	72	55	7	1	35	1.39
4515797--4515823	9	3.0	9	100	0	54	66	0	0	33	0.92
4516788--4516883	45	2.1	45	88	0	138	58	4	3	34	1.33
4517222--4517263	21	2.0	20	90	4	66	0	16	4	78	0.91
4519233--4519262	15	2.0	15	100	0	60	26	26	6	40	1.81
4521588--4521620	15	2.3	15	89	5	50	45	0	0	54	0.99
4523667--4523923	116	2.2	115	88	3	354	34	28	10	27	1.89
4532013--4532269	131	2.0	132	88	2	392	22	23	24	29	1.99
4534036--4534094	27	2.2	27	85	11	77	50	6	0	42	1.28
4534044--4534124	28	2.9	28	81	5	83	58	3	0	38	1.16
4534161--4534265	29	3.5	30	78	10	117	41	2	20	34	1.67
4537219--4537294	23	3.2	22	85	10	98	11	25	22	40	1.88
4537259--4537333	39	1.9	39	91	0	123	12	22	21	44	1.85
4538677--4538905	75	3.1	75	65	15	204	48	5	6	39	1.53
4538615--4538904	147	2.0	147	97	0	546	48	5	7	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4542583--4542615	16	2.1	16	100	0	66	30	18	12	39	1.87
4554547--4554580	2	17.0	2	100	0	68	50	0	0	50	1.00
4555596--4555632	19	1.9	19	88	0	56	64	5	5	24	1.36
4556509--4556547	20	2.0	20	85	10	53	28	12	2	56	1.50
4566067--4566177	58	1.9	58	84	0	150	23	24	18	34	1.96
4576238--4576274	19	1.9	19	100	0	74	32	16	18	32	1.93
4582384--4582421	20	1.9	20	88	0	58	36	26	21	15	1.93
4582383--4582427	20	2.3	19	81	11	54	37	24	22	15	1.93
4582422--4582501	7	11.9	7	77	9	51	42	15	18	23	1.88
4582477--4582513	7	5.3	7	90	0	56	27	21	27	24	1.99
4582602--4582655	25	2.2	25	86	0	72	18	0	33	48	1.49
4589500--4589578	13	5.9	13	76	4	68	37	21	21	18	1.94
4589533--4589571	20	2.0	20	89	0	60	41	20	20	17	1.91
4589494--4589557	33	1.9	33	84	12	87	39	23	20	17	1.92
4589494--4589580	7	12.9	7	75	11	56	36	22	21	18	1.95
4589621--4589671	16	3.2	16	88	2	59	9	13	31	45	1.76
4589627--4589676	16	3.2	16	88	5	68	8	12	32	48	1.69
4589627--4589676	15	3.3	15	86	5	64	8	12	32	48	1.69
4589706--4589763	25	2.3	25	76	5	64	20	0	31	48	1.50
4595133--4595167	2	17.5	2	100	0	70	48	0	0	51	1.00
4596559--4596622	33	1.9	33	81	12	78	46	3	14	35	1.60
4597103--4597222	64	1.9	64	83	0	159	24	13	20	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4611548--4611596	22	2.2	22	82	7	55	53	4	4	38	1.39
4612626--4612695	28	2.4	29	95	2	124	45	4	11	38	1.60
4628047--4628091	23	2.0	23	95	0	81	35	20	4	40	1.72
4630143--4630167	12	2.1	12	100	0	50	48	0	0	52	1.00
4630602--4630639	18	2.1	19	85	9	53	60	2	0	36	1.11
4630589--4630648	27	2.1	29	82	11	72	61	5	0	33	1.17
4632141--4632173	17	2.0	17	88	5	50	54	0	0	45	0.99
4633331--4633365	16	2.2	16	90	5	54	25	0	0	74	0.82
4641276--4641310	17	2.1	17	89	10	54	65	5	0	28	1.15
4642432--4642469	18	2.1	19	85	5	51	50	5	2	42	1.39
4643222--4643631	197	2.1	197	87	1	590	33	16	11	38	1.84
4644247--4644281	18	1.9	18	88	11	54	71	2	14	11	1.25
4646491--4647026	217	2.5	211	84	4	666	39	13	12	35	1.81
4647238--4647276	17	2.2	18	86	4	53	56	2	5	35	1.35
4648235--4648276	4	10.8	4	80	14	52	21	4	0	73	1.01
4648239--4648283	16	2.8	16	86	6	56	17	8	0	73	1.08
4648906--4649336	39	10.9	40	76	9	233	25	16	27	31	1.96
4648946--4649354	78	5.2	77	77	7	338	24	17	26	31	1.97
4648966--4649297	39	8.4	39	78	8	246	25	15	28	30	1.96
4648980--4649337	159	2.2	160	81	7	399	24	16	28	30	1.96
4648963--4649375	120	3.5	117	80	7	422	25	16	27	30	1.97
4649085--4649375	159	1.8	158	81	5	363	27	17	28	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4656819--4657347	221	2.4	213	84	4	643	40	12	11	35	1.80
4659105--4659138	10	3.3	10	88	8	50	11	0	2	85	0.71
4660789--4660932	42	3.4	41	81	6	155	36	11	26	25	1.90
4666621--4666659	18	2.1	19	90	4	62	64	0	17	17	1.30
4666548--4666660	52	2.2	50	81	13	124	46	5	20	28	1.72
4666621--4666659	6	6.3	6	83	16	53	64	0	17	17	1.30
4686166--4686223	22	2.6	22	86	0	71	36	20	34	8	1.84
4686190--4686258	22	3.1	22	89	2	93	39	20	27	13	1.89
4688707--4688741	16	2.1	17	89	5	54	20	17	0	62	1.32
4697039--4697083	22	2.0	22	84	16	58	40	0	8	51	1.33
4699048--4699173	23	5.4	22	83	5	117	11	23	21	43	1.84
4699051--4699173	46	2.6	47	84	5	151	11	24	20	43	1.84
4700225--4700271	20	2.3	21	88	3	69	59	0	2	38	1.09
4705437--4705478	16	2.7	16	88	3	59	28	2	0	69	1.01
4705438--4705485	16	3.4	14	81	13	53	27	2	0	70	0.98
4705798--4705830	17	1.9	17	88	11	50	48	0	0	51	1.00
4709842--4709888	20	2.4	20	92	3	78	55	8	0	36	1.31
4711058--4711087	11	2.7	11	100	0	60	40	6	0	53	1.27
4723114--4723256	69	2.1	69	82	10	168	39	0	5	54	1.29
4724159--4724213	19	2.6	21	80	11	60	30	1	9	58	1.40
4725918--4726056	58	2.4	58	87	4	201	37	2	28	31	1.69
4725918--4726089	58	3.0	57	85	4	193	36	2	27	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4725953--4726090	29	4.8	29	75	11	115	34	1	28	35	1.66
4727262--4727325	2	32.0	2	100	0	128	50	0	0	50	1.00
4727968--4728059	6	15.8	6	76	10	75	51	2	2	44	1.25
4727971--4728069	17	6.4	16	68	25	61	52	2	3	42	1.28
4728011--4728069	18	3.3	18	80	4	66	57	0	3	38	1.15
4730558--4730591	17	2.1	17	89	10	54	41	0	5	52	1.25
4731696--4731837	43	3.3	43	87	0	203	30	26	19	23	1.98
4732166--4732213	21	2.3	21	85	0	69	0	39	18	41	1.51
4737901--4737937	8	4.6	8	89	0	56	64	2	0	32	1.07
4738027--4738109	26	3.2	26	76	19	91	40	0	6	53	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144