genome.fa.s7.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  134  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33823293--33823576	60	4.7	60	75	8	229	38	13	17	30	1.89
33831848--33831935	31	2.9	30	79	14	101	37	1	17	44	1.56
33834871--33834912	18	2.3	18	88	8	59	45	4	4	45	1.45
33846167--33846196	15	2.0	15	100	0	60	40	13	6	40	1.71
33851077--33851101	12	2.1	12	100	0	50	24	0	32	44	1.54
33886767--33886791	3	8.3	3	100	0	50	32	0	36	32	1.58
33898908--33898956	24	2.1	23	88	3	71	28	10	8	53	1.63
33900094--33900136	18	2.4	17	81	11	50	0	39	2	58	1.11
33913401--33913434	6	5.7	6	100	0	68	50	17	17	14	1.79
33915249--33915330	39	2.2	37	77	14	87	39	13	18	29	1.89
33917713--33917739	6	4.5	6	100	0	54	18	66	14	0	1.25
33920530--33920575	25	1.9	23	86	8	65	67	8	4	19	1.35
33920514--33920578	25	2.6	25	79	13	64	70	7	3	18	1.24
33922377--33922425	26	1.9	26	83	4	64	30	2	0	67	1.02
33924447--33924500	27	2.0	27	92	0	90	29	7	22	40	1.81
33931821--33931891	17	4.4	18	68	24	50	46	9	4	39	1.57
33939919--33939943	1	25.0	1	100	0	50	0	0	0	100	0.00
33945187--33945307	46	2.6	47	82	5	138	13	21	19	46	1.83
33945186--33945359	23	7.5	23	73	10	122	12	21	19	45	1.83
33946218--33946261	23	2.0	23	90	4	72	45	4	6	43	1.51
33947045--33947078	17	2.0	17	88	11	52	41	0	8	50	1.34
33948015--33948064	2	25.0	2	100	0	100	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33948983--33949071	22	3.8	25	73	18	59	49	2	6	41	1.41
33949010--33949071	22	2.8	22	75	0	70	53	0	3	43	1.17
33949010--33949092	22	3.8	22	74	3	60	53	1	3	42	1.26
33955889--33955954	29	2.3	29	86	5	89	63	1	6	28	1.27
33964783--33964809	3	9.0	3	100	0	54	33	0	0	66	0.92
33967048--33967083	16	2.2	16	90	0	54	72	0	0	27	0.85
33973999--33974033	2	17.5	2	100	0	70	0	48	0	51	1.00
33980910--33980944	6	5.8	6	100	0	70	34	0	51	14	1.42
33982386--33982454	30	2.3	31	85	7	90	47	1	18	31	1.58
33982562--33982595	14	2.4	14	86	13	52	44	0	0	55	0.99
33995460--33996247	89	9.0	89	84	4	874	42	8	10	39	1.69
33996205--33996289	42	2.0	42	97	0	161	44	9	4	41	1.57
33996125--33996378	133	1.9	131	92	1	427	43	9	7	40	1.64
33996247--34005737	89	105.9	89	86	5	8933	44	8	8	38	1.67
33996247--34009689	178	74.8	178	89	3	19102	43	8	8	38	1.67
33996247--34009689	357	37.4	357	89	3	19347	43	8	8	38	1.67
34000973--34001275	105	2.7	110	88	8	429	40	8	8	42	1.65
34001126--34001187	31	2.0	31	93	0	106	40	11	8	40	1.70
34005658--34005962	106	2.7	111	89	8	442	41	8	8	41	1.65
34005813--34005874	31	2.0	31	93	0	106	40	11	8	40	1.70
34005844--34009685	89	43.0	89	84	6	4479	42	8	9	39	1.68
34007352--34007414	31	2.0	31	93	0	108	41	9	9	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34007264--34007498	120	2.0	119	91	0	380	43	8	9	38	1.67
34007175--34007591	208	2.0	209	93	1	712	43	8	9	38	1.68
34009545--34009818	141	1.9	141	92	1	460	40	7	10	41	1.67
34009693--34010028	88	3.9	85	83	5	381	36	6	11	44	1.66
34012835--34012865	16	1.9	16	93	0	53	58	9	0	32	1.31
34015060--34015097	19	2.0	19	90	10	60	52	2	5	39	1.38
34015060--34015095	18	1.9	19	88	5	56	52	2	5	38	1.39
34027421--34027471	15	3.5	15	81	5	68	60	0	0	39	0.97
34027421--34027485	15	4.7	14	76	14	64	61	0	0	38	0.96
34027419--34027486	29	2.3	31	78	17	81	61	0	0	38	0.96
34029737--34029833	49	2.0	50	93	2	169	41	11	17	29	1.84
34033215--34033246	3	11.0	3	93	6	57	34	0	0	65	0.93
34034955--34034990	6	6.0	6	100	0	72	0	66	0	33	0.92
34036810--34036859	26	2.0	25	84	11	66	42	0	0	58	0.98
34036838--34036900	31	2.1	29	85	8	81	42	0	1	55	1.09
34041994--34042035	2	21.0	2	100	0	84	50	0	0	50	1.00
34044608--34044657	26	1.9	26	87	0	73	42	10	14	34	1.78
34056620--34056661	19	2.2	20	86	4	59	50	4	2	42	1.36
34060474--34060541	2	34.0	2	90	0	109	45	0	4	50	1.22
34090945--34091008	31	2.1	31	82	8	78	56	9	1	32	1.41
34092468--34092499	15	2.1	15	100	0	64	37	12	6	43	1.68
34105067--34105281	106	2.0	109	86	4	305	47	11	10	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34110383--34110434	16	3.6	16	65	24	51	61	11	13	13	1.57
34110389--34110439	12	4.0	12	78	14	57	58	11	11	17	1.62
34110388--34110441	27	2.0	27	100	0	108	55	11	14	18	1.68
34111716--34111784	33	2.2	33	84	5	88	37	8	11	42	1.72
34115399--34115459	21	3.2	20	77	13	56	65	0	4	29	1.13
34115424--34115460	17	2.1	18	90	5	58	67	0	2	29	1.04
34118992--34119067	38	2.0	38	100	0	152	26	18	10	44	1.82
34144768--34144798	16	2.0	16	93	6	55	51	6	6	35	1.53
34148703--34148739	18	2.1	18	89	0	56	24	27	0	48	1.51
34149445--34149488	12	3.6	12	84	6	52	0	31	0	68	0.90
34157787--34157853	34	2.0	34	96	0	125	32	10	14	41	1.80
34173137--34173191	18	3.0	18	76	10	58	41	1	0	56	1.10
34173121--34173193	19	3.8	20	67	20	55	39	2	0	57	1.13
34175115--34175160	11	4.4	11	75	10	51	54	0	0	45	0.99
34181229--34181290	30	2.1	30	84	6	81	50	12	4	32	1.62
34181347--34181380	16	2.1	17	88	5	52	35	0	2	61	1.11
34194680--34194713	15	2.2	16	89	5	52	32	0	0	67	0.91
34211283--34211347	19	3.6	18	76	10	51	43	0	3	53	1.16
34211309--34211348	19	2.2	18	86	4	53	47	0	2	50	1.14
34220278--34220314	13	2.8	13	91	0	65	43	8	0	48	1.32
34220278--34220314	12	2.9	12	88	11	56	43	8	0	48	1.32
34222362--34222400	3	13.0	3	88	0	51	58	2	33	5	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34222912--34222968	3	19.0	3	88	0	87	61	0	38	0	0.96
34233047--34233073	8	3.4	8	100	0	54	70	0	0	29	0.88
34242792--34242838	21	2.2	22	81	11	53	40	0	4	55	1.19
34248809--34248864	17	3.3	16	76	16	51	16	3	21	58	1.52
34249001--34249035	5	7.0	5	93	0	61	0	77	0	22	0.78
34249302--34249336	15	2.2	16	90	5	54	0	20	0	80	0.72
34259316--34259350	17	2.1	17	88	0	52	54	0	0	45	0.99
34259348--34259400	5	9.6	5	77	18	52	41	0	1	56	1.10
34259341--34259401	12	5.5	11	83	11	61	42	0	1	55	1.09
34259340--34259421	35	2.5	32	84	11	103	45	1	1	52	1.16
34259679--34259729	17	3.0	18	83	8	63	58	0	0	41	0.98
34261231--34261288	29	2.0	29	100	0	116	55	6	17	20	1.65
34261835--34261901	29	2.3	29	82	2	73	41	7	8	41	1.64
34263100--34263128	12	2.3	13	94	5	51	27	0	10	62	1.28
34265276--34265343	31	2.2	31	92	2	111	23	23	13	39	1.90
34265283--34265333	16	3.2	16	72	5	59	25	25	15	33	1.95
34292863--34292901	20	2.0	20	89	0	60	17	30	20	30	1.96
34300833--34300874	14	3.0	14	83	13	59	64	4	0	30	1.14
34300833--34300875	13	3.2	13	78	12	50	62	4	0	32	1.15
34306343--34306390	13	3.6	14	78	15	57	39	4	22	33	1.74
34311682--34311714	12	2.5	14	90	9	52	81	3	6	9	0.95
34338397--34338428	16	1.9	16	93	6	55	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34341289--34341319	16	1.9	16	93	0	53	58	0	3	38	1.15
34341344--34341396	22	2.3	24	77	9	65	37	0	7	54	1.29
34341405--34341439	16	2.1	17	89	5	54	51	0	0	48	1.00
34345841--34345875	5	7.0	5	86	0	52	37	2	2	57	1.29
34346564--34346610	25	1.9	25	86	4	69	76	6	2	14	1.08
34347621--34347672	27	1.9	27	88	0	77	50	0	1	48	1.12
34354623--34354745	23	5.3	23	79	7	131	40	21	26	11	1.87
34354731--34354760	15	2.0	15	100	0	60	33	13	40	13	1.83
34358118--34358142	4	6.2	4	100	0	50	24	0	0	76	0.80
34365797--34365821	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144