genome.fa.s7.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  79  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17601981--17602035	20	2.6	21	85	11	76	80	0	1	18	0.81
17602600--17602662	29	2.2	29	88	0	90	38	15	15	30	1.89
17602610--17602688	29	2.7	29	80	3	70	37	15	18	27	1.91
17602799--17602934	40	3.4	40	78	6	159	22	14	22	39	1.91
17603348--17603480	53	2.5	53	83	2	169	31	34	15	18	1.92
17603462--17603612	43	3.5	43	84	0	203	31	39	11	17	1.86
17604753--17604795	20	2.1	20	86	4	59	32	4	18	44	1.71
17604808--17604935	20	6.8	18	67	15	73	38	3	3	54	1.35
17605046--17605313	88	3.1	87	84	4	317	32	10	20	37	1.86
17605847--17605900	18	3.1	18	71	15	58	64	1	1	31	1.14
17614172--17614258	46	1.9	44	83	4	111	34	2	24	39	1.68
17614399--17614440	16	2.6	16	85	7	50	45	0	0	54	0.99
17614351--17614526	55	3.0	54	81	14	174	54	0	2	42	1.17
17615431--17615484	20	2.7	20	97	2	99	20	7	5	66	1.37
17616999--17617062	25	2.7	23	72	13	58	50	10	3	35	1.54
17617607--17617651	23	1.9	23	81	4	54	28	6	4	60	1.42
17617813--17617909	30	3.2	29	78	5	86	31	27	5	35	1.79
17617861--17617926	30	2.2	29	78	10	71	28	22	7	40	1.81
17617908--17617943	17	2.1	17	100	0	72	27	16	5	50	1.68
17617883--17617972	47	1.9	47	90	0	144	30	21	6	42	1.78
17618016--17618133	63	1.9	59	88	6	173	38	17	1	41	1.60
17617925--17618227	30	10.1	29	72	15	145	34	23	2	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17618052--17618223	29	5.8	28	73	13	114	37	23	1	37	1.63
17618052--17618223	90	1.9	87	86	8	231	37	23	1	37	1.63
17637959--17638041	40	2.1	40	90	0	130	46	15	22	14	1.82
17639101--17639429	124	2.7	123	81	3	376	40	15	18	25	1.90
17641121--17641385	30	8.9	30	79	6	202	32	26	4	37	1.76
17641127--17641445	60	5.3	59	80	9	263	33	25	3	37	1.74
17641127--17641457	90	3.7	89	82	7	300	33	25	3	37	1.74
17641211--17641532	30	10.8	30	76	12	224	35	25	1	37	1.66
17641213--17641458	60	4.1	60	85	7	279	36	25	1	36	1.66
17644858--17644984	56	2.3	56	76	10	125	33	24	14	26	1.94
17644905--17645045	28	5.0	28	86	0	129	35	21	11	31	1.89
17659229--17659334	29	3.3	32	69	18	94	39	0	3	55	1.24
17659211--17659358	68	2.2	65	84	8	183	39	2	4	54	1.31
17659528--17659580	22	2.2	24	83	9	65	35	0	1	62	1.06
17664309--17664442	36	3.7	36	88	0	187	36	24	11	26	1.90
17664528--17664778	23	11.0	23	87	2	337	47	13	5	34	1.65
17675045--17675228	23	8.0	23	87	0	260	46	14	4	34	1.65
17678422--17678446	13	1.9	13	100	0	50	24	8	20	48	1.76
17682880--17682910	12	2.6	12	100	0	62	64	9	6	19	1.45
17686456--17686486	16	1.9	16	93	0	53	41	3	0	54	1.16
17687005--17687096	32	3.0	29	71	11	85	54	6	10	28	1.60
17688132--17688171	21	1.9	21	94	0	71	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17688148--17688319	63	2.7	64	91	1	292	43	0	4	52	1.22
17700385--17700610	39	5.7	40	72	10	187	28	27	18	25	1.98
17700385--17700609	79	2.8	79	87	2	335	28	27	18	25	1.98
17701125--17701358	63	3.7	63	97	0	432	42	0	4	52	1.20
17702837--17702879	20	2.2	19	83	4	50	39	2	0	58	1.11
17703085--17703119	13	2.8	12	86	4	52	17	0	2	80	0.84
17703225--17703275	25	2.0	27	84	7	70	41	0	3	54	1.19
17703247--17703279	17	1.9	17	88	11	50	48	0	3	48	1.17
17705620--17705707	26	3.4	26	95	0	149	25	3	12	59	1.49
17708671--17708723	27	2.0	27	84	0	70	20	30	28	20	1.98
17708686--17708738	27	2.0	27	84	0	70	16	28	30	24	1.97
17715720--17715870	41	3.7	41	86	1	196	33	33	12	20	1.90
17723437--17723476	21	2.0	22	85	14	59	37	25	0	37	1.56
17723435--17723484	19	2.5	21	81	12	61	34	24	4	38	1.74
17724947--17724997	16	3.1	18	72	21	65	25	21	19	33	1.97
17727840--17727878	21	2.0	20	85	14	55	15	10	15	58	1.62
17734512--17734594	38	2.2	38	84	2	103	34	19	7	38	1.79
17741059--17741083	12	2.1	12	100	0	50	40	0	0	60	0.97
17741576--17741622	19	2.4	20	82	10	53	36	4	6	53	1.46
17752633--17752691	15	3.8	15	75	16	66	52	1	0	45	1.10
17752712--17752787	24	3.3	24	70	9	68	42	1	2	53	1.23
17752709--17752808	45	2.2	46	87	1	139	40	2	2	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17753427--17753499	36	2.0	36	100	0	146	35	13	5	45	1.67
17753433--17753533	36	3.2	31	83	12	109	34	10	6	47	1.66
17755031--17755099	26	2.7	26	88	0	93	28	13	26	31	1.93
17755031--17755117	26	3.3	26	82	3	86	29	13	24	32	1.94
17757498--17757537	20	2.0	20	95	0	71	35	17	20	27	1.95
17769026--17769080	28	2.0	28	89	7	85	21	12	3	61	1.46
17772268--17772307	18	2.3	18	86	4	55	55	7	15	22	1.65
17773916--17773944	12	2.5	12	94	5	51	6	0	37	55	1.27
17783853--17783892	20	2.0	20	90	0	62	17	30	10	42	1.82
17789226--17789270	23	1.9	24	86	4	65	35	4	0	60	1.17
17790860--17790940	29	2.8	29	83	3	92	37	13	12	37	1.83
17791785--17791838	20	2.7	21	85	5	76	53	0	0	46	1.00
17792325--17792405	42	2.0	42	92	2	137	55	6	6	32	1.49
17792334--17792399	21	3.3	19	70	17	53	54	3	7	34	1.44
17792339--17792405	22	3.2	20	70	17	64	56	4	7	31	1.47
17815744--17815782	17	2.3	17	86	0	51	20	12	15	51	1.76
17819302--17819378	28	2.6	29	85	10	111	74	0	15	10	1.08
17819309--17819375	28	2.4	28	94	0	116	73	0	14	11	1.11
17820447--17820497	23	2.2	23	100	0	102	37	11	9	41	1.75
17824960--17825021	30	2.0	30	90	3	97	74	0	12	12	1.08
17845908--17845996	17	4.7	18	69	16	65	41	4	3	50	1.39
17845972--17846088	62	1.9	59	86	5	162	44	2	2	50	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17851240--17851273	16	2.1	17	88	5	52	29	5	20	44	1.75
17851735--17851791	3	19.0	3	96	0	105	64	0	1	33	1.04
17854787--17854848	11	6.2	10	77	17	58	74	1	1	22	1.00
17854778--17854865	30	3.0	29	82	11	83	69	2	1	27	1.08
17854778--17854928	9	15.9	9	70	12	88	65	2	1	30	1.14
17854778--17854865	29	3.0	28	80	11	88	69	2	1	27	1.08
17854778--17854923	28	5.1	28	73	14	102	67	2	1	29	1.11
17854836--17854882	17	2.7	18	81	15	55	61	2	2	34	1.20
17854808--17854923	21	5.6	19	72	18	65	66	1	0	31	1.08
17854901--17854958	29	2.0	29	82	3	71	63	5	0	31	1.16
17857615--17857680	33	1.9	36	84	9	93	53	6	31	9	1.57
17858704--17858824	23	5.2	23	82	11	156	11	25	23	39	1.88
17858704--17858824	48	2.6	46	87	7	172	11	25	23	39	1.88
17858789--17858863	39	1.9	39	91	0	123	12	22	21	44	1.85
17865540--17865565	13	2.0	13	100	0	52	30	7	7	53	1.57
17870200--17870255	22	2.5	22	82	0	76	66	14	5	14	1.42
17871730--17871814	30	2.8	30	92	0	134	31	11	20	36	1.88
17871722--17871821	30	3.3	30	88	0	110	32	13	19	36	1.89
17874243--17874277	4	8.8	4	100	0	70	51	22	0	25	1.48
17875374--17875421	20	2.4	21	79	10	55	31	4	2	62	1.26
17875398--17875470	29	2.4	30	76	17	71	34	4	1	60	1.24
17875375--17875450	20	3.8	20	65	16	50	31	3	2	61	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17875432--17875473	21	2.0	21	86	9	59	40	4	2	52	1.35
17875437--17875487	22	2.3	22	83	12	61	39	1	3	54	1.30
17875659--17875706	20	2.4	21	79	10	55	27	4	6	62	1.38
17875716--17875757	21	2.0	21	86	9	59	40	4	2	52	1.35
17875721--17875771	22	2.3	22	83	12	61	39	1	3	54	1.30
17875674--17875913	10	24.8	9	65	17	81	32	3	3	60	1.31
17875674--17875913	18	12.9	18	65	23	63	32	3	3	60	1.31
17883245--17883292	24	2.0	24	83	0	60	41	2	2	54	1.24
17885599--17885634	18	2.0	18	100	0	72	33	0	16	50	1.46
17901930--17901987	21	2.8	21	83	0	62	31	15	20	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144