genome.fa.s7.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  132  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32986515--32986594	31	2.6	31	88	4	108	30	12	17	40	1.86
32986539--32986621	31	2.7	31	85	3	98	32	14	14	38	1.86
32997139--32997171	2	16.5	2	100	0	66	51	48	0	0	1.00
32997406--32997452	4	12.0	4	86	8	62	70	0	29	0	0.88
33001031--33001078	24	2.0	25	83	4	62	58	0	8	33	1.28
33005448--33005475	5	5.6	5	100	0	56	39	0	0	60	0.97
33010261--33010356	46	2.1	46	90	3	149	38	15	14	31	1.88
33010261--33010374	46	2.5	46	84	5	115	40	14	14	30	1.86
33013115--33013219	54	1.9	56	88	3	160	25	20	18	36	1.95
33013232--33013349	60	2.0	60	88	6	177	27	17	16	38	1.91
33013506--33013566	31	2.0	30	87	3	86	24	8	22	44	1.80
33015209--33015256	12	3.7	12	77	20	51	47	0	10	41	1.37
33015387--33015743	83	4.3	83	94	0	608	37	5	4	52	1.44
33015568--33015699	44	3.1	44	60	24	102	37	5	6	51	1.49
33015387--33015743	165	2.2	166	93	0	608	37	5	4	52	1.44
33015909--33015947	20	2.0	20	94	0	69	12	33	25	28	1.93
33015937--33015993	20	2.8	20	97	0	105	10	31	24	33	1.89
33016815--33016868	19	2.7	20	75	18	58	24	1	1	72	1.05
33018195--33018260	30	2.2	30	84	10	82	30	4	6	59	1.42
33019137--33019195	31	1.9	31	96	3	111	44	8	10	37	1.69
33019167--33019349	61	3.1	62	82	9	174	36	15	20	27	1.93
33019254--33019371	55	2.1	55	86	7	159	37	15	21	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33027385--33027477	45	2.1	45	100	0	186	50	6	2	40	1.40
33033139--33033167	6	4.8	6	100	0	58	34	0	13	51	1.42
33035362--33035393	10	3.1	11	82	17	50	18	9	0	71	1.12
33036057--33036173	57	2.1	54	82	12	137	44	20	22	12	1.85
33036115--33036196	23	3.5	23	91	3	119	46	21	19	12	1.82
33036114--33036216	23	4.4	23	85	7	100	45	21	21	11	1.83
33036114--33036216	48	2.2	46	81	6	118	45	21	21	11	1.83
33044146--33044170	7	3.6	7	100	0	50	88	12	0	0	0.53
33045148--33045236	31	3.0	30	80	4	108	39	13	12	34	1.82
33053924--33053963	15	2.5	17	88	12	66	62	0	0	37	0.95
33061758--33061819	29	2.2	28	85	8	81	25	16	9	48	1.76
33061841--33061892	27	1.9	27	92	0	86	34	9	7	48	1.65
33062083--33062159	31	2.5	31	87	4	102	42	11	15	29	1.82
33062025--33062194	90	1.9	89	84	3	225	50	11	13	24	1.75
33062663--33062697	17	2.1	17	94	0	61	45	5	5	42	1.51
33072681--33072713	16	2.1	16	88	5	50	51	0	0	48	1.00
33078305--33078366	31	2.0	31	84	6	81	41	0	3	54	1.16
33078449--33078501	21	2.4	22	87	12	74	37	3	0	58	1.16
33078449--33078507	21	2.7	22	84	10	59	33	3	3	59	1.31
33087612--33087641	2	15.0	2	92	0	51	0	46	0	53	1.00
33087688--33087724	6	6.0	6	96	3	65	67	0	32	0	0.91
33089382--33089435	20	2.6	20	82	11	56	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33089406--33089452	15	3.2	15	82	8	53	63	0	0	36	0.94
33089485--33089533	21	2.3	21	78	0	53	26	24	22	26	2.00
33099695--33099780	33	2.6	34	88	1	120	51	16	8	24	1.71
33100212--33100255	21	2.1	21	82	0	52	43	13	9	34	1.76
33102720--33102762	14	3.1	14	83	10	52	16	20	23	39	1.92
33113903--33113940	16	2.4	16	91	8	60	71	2	0	26	1.00
33118665--33118761	40	2.4	40	100	0	194	35	20	9	35	1.85
33122227--33122269	20	2.2	20	86	0	59	46	13	0	39	1.44
33122247--33122386	66	2.1	67	82	5	169	41	14	7	37	1.73
33124198--33124225	2	14.0	2	100	0	56	50	0	0	50	1.00
33132750--33133236	58	8.3	59	80	8	412	39	4	24	31	1.75
33132752--33133178	29	14.6	29	67	21	129	39	4	24	31	1.76
33133020--33133256	29	8.2	28	72	10	172	38	3	24	34	1.72
33134390--33134424	16	2.2	16	94	0	61	31	2	2	62	1.24
33134413--33134465	20	2.6	20	81	3	61	47	5	0	47	1.26
33134824--33134907	27	3.2	27	71	6	91	25	11	22	40	1.88
33134840--33134925	25	3.4	25	73	6	91	24	10	22	43	1.84
33134823--33134938	52	2.2	52	95	0	205	24	11	22	42	1.86
33135301--33135349	18	2.7	18	84	15	66	53	2	0	44	1.12
33138336--33138374	19	2.0	20	85	5	53	51	5	10	33	1.58
33139301--33139353	24	2.2	24	100	0	106	28	47	3	20	1.68
33140269--33140314	21	2.0	24	88	12	71	52	4	4	39	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33145252--33145293	18	2.3	18	84	12	59	50	2	4	42	1.36
33146205--33146263	29	2.0	29	93	0	100	27	8	3	61	1.41
33161159--33161192	18	1.9	18	88	5	52	32	5	20	41	1.76
33176226--33176310	28	2.9	29	70	18	77	34	3	28	34	1.74
33176161--33176310	60	2.6	57	84	9	178	35	3	28	32	1.74
33176575--33176636	31	2.0	32	87	3	90	61	6	11	20	1.52
33178106--33178154	25	2.0	24	92	4	80	53	0	0	46	1.00
33178106--33178157	6	8.7	6	83	8	70	55	0	0	44	0.99
33196380--33196470	11	8.1	11	70	18	62	39	0	4	56	1.20
33196380--33196486	17	6.3	17	83	3	126	40	0	4	55	1.21
33196391--33196441	23	2.2	24	79	10	61	43	0	1	54	1.11
33196380--33196485	28	4.0	26	72	19	76	39	0	4	55	1.21
33196406--33196468	23	2.8	22	75	20	58	38	0	6	55	1.25
33198476--33198876	29	13.8	29	78	8	372	36	26	3	33	1.74
33198476--33198876	59	6.9	58	82	6	404	36	26	3	33	1.74
33198480--33198945	59	8.0	56	80	6	360	35	26	4	33	1.77
33198865--33198993	59	2.2	60	82	5	158	31	24	7	36	1.84
33198836--33198999	58	2.8	58	78	9	163	32	24	6	36	1.82
33198983--33199060	28	2.8	28	86	0	93	32	28	7	32	1.85
33199009--33199072	28	2.3	28	86	2	94	34	29	9	26	1.88
33207171--33207245	25	3.1	25	61	24	61	30	10	12	46	1.75
33207148--33207256	47	2.3	47	98	0	209	31	9	11	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33260190--33260228	18	2.2	18	90	0	60	46	10	5	38	1.60
33260485--33260511	6	4.5	6	100	0	54	33	0	51	14	1.43
33285174--33285202	3	9.7	3	100	0	58	34	0	34	31	1.58
33290078--33290125	23	2.1	22	81	11	53	60	4	14	20	1.51
33293862--33293907	21	2.2	21	84	7	58	28	26	6	39	1.81
33309439--33309486	20	2.4	19	83	10	60	62	0	10	27	1.27
33311314--33311442	59	2.1	61	85	5	174	24	16	13	45	1.83
33312036--33312080	20	2.3	20	84	3	56	64	4	2	28	1.25
33313405--33313449	19	2.3	20	85	14	60	11	8	17	62	1.53
33318604--33318653	19	2.8	18	85	11	59	30	2	6	62	1.31
33319108--33319165	28	2.1	28	83	6	73	36	12	18	32	1.88
33319538--33319571	14	2.5	14	90	4	52	44	26	0	29	1.55
33323455--33323492	17	2.2	18	90	4	60	57	5	5	31	1.43
33335210--33335258	24	2.0	24	84	7	64	40	4	2	53	1.32
33345342--33345374	15	2.3	15	89	5	50	39	0	3	57	1.14
33345372--33345407	18	2.0	18	88	0	54	61	5	0	33	1.19
33350457--33350483	14	1.9	14	100	0	54	7	0	40	51	1.30
33350465--33350490	10	2.6	10	100	0	52	7	0	42	50	1.31
33356500--33356555	21	2.7	20	78	10	58	21	1	3	73	1.08
33357808--33357838	16	1.9	16	100	0	62	0	19	0	80	0.71
33361496--33361520	12	2.1	12	100	0	50	24	8	40	28	1.83
33363097--33363121	1	25.0	1	100	0	50	0	0	100	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33368512--33368543	6	5.3	6	100	0	64	34	31	0	34	1.58
33372515--33372579	10	6.1	10	75	12	58	72	3	4	20	1.16
33372521--33372562	16	2.6	16	84	0	57	71	4	4	19	1.22
33379489--33379520	2	16.0	2	100	0	64	50	0	0	50	1.00
33379725--33379784	28	2.2	28	85	11	88	35	5	0	60	1.19
33390717--33390772	29	1.9	29	85	0	76	53	7	3	35	1.46
33395766--33395851	42	2.0	42	91	4	138	32	0	19	47	1.50
33410311--33410336	1	26.0	1	100	0	52	100	0	0	0	0.00
33421660--33421688	3	9.7	3	100	0	58	0	34	31	34	1.58
33424417--33424446	2	15.0	2	92	0	51	50	46	0	3	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144