genome.fa.s7.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  23  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5683189--5683624	204	2.2	198	92	2	719	19	2	52	26	1.58
5683529--5683565	18	2.1	18	94	0	65	18	0	62	18	1.34
5688256--5688430	87	2.0	87	96	0	323	43	26	13	16	1.85
5689155--5689243	44	2.0	43	89	2	133	46	31	0	22	1.52
5689253--5689349	32	3.1	30	77	5	104	45	25	3	25	1.68
5689580--5689616	17	2.1	18	90	5	58	29	0	0	70	0.88
5693088--5693138	26	2.0	26	100	0	102	37	15	15	31	1.89
5699270--5699300	2	15.5	2	100	0	62	0	51	0	48	1.00
5704949--5705016	34	2.0	34	91	0	109	29	11	30	27	1.92
5704972--5705281	154	2.0	154	99	0	611	38	19	18	24	1.93
5708562--5708862	61	5.0	61	80	8	195	29	19	15	35	1.93
5708561--5708861	60	5.0	60	80	7	315	28	19	16	35	1.93
5709211--5709297	45	1.9	45	97	0	165	42	17	12	27	1.85
5709279--5709383	50	2.0	52	87	5	151	31	20	23	24	1.98
5709835--5709875	16	2.6	16	75	17	50	48	0	0	51	1.00
5709845--5709894	25	2.0	25	84	0	64	56	0	0	44	0.99
5711759--5711831	22	3.3	22	77	7	76	6	5	21	65	1.37
5711839--5711913	12	6.4	12	73	11	57	14	4	10	70	1.29
5711839--5711911	23	3.2	23	75	5	76	15	4	9	71	1.27
5712060--5712103	13	3.4	13	82	17	56	22	0	6	70	1.11
5714173--5714220	20	2.4	20	86	6	62	0	56	2	41	1.11
5715460--5715510	24	2.1	24	88	0	75	25	11	7	54	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5720286--5720385	29	3.6	26	67	16	67	60	12	5	23	1.51
5723054--5723105	14	3.8	14	79	5	61	21	30	30	17	1.96
5723128--5723183	28	2.0	28	85	0	76	26	23	26	23	2.00
5723191--5723261	28	2.5	28	84	11	83	28	18	28	25	1.98
5723197--5723261	14	4.6	14	73	17	55	27	20	26	26	1.99
5723243--5723300	28	2.1	28	86	0	80	24	22	31	22	1.99
5724783--5724842	28	2.1	28	81	0	66	33	10	5	51	1.57
5728007--5728048	2	21.0	2	100	0	84	50	0	0	50	1.00
5729085--5729143	31	1.9	31	92	0	100	59	18	10	11	1.60
5729120--5729173	24	2.2	25	90	3	83	61	11	7	20	1.53
5729120--5729271	56	2.7	57	76	7	141	56	12	6	24	1.59
5731463--5731517	25	2.2	24	87	6	74	52	0	0	47	1.00
5731436--5731525	30	3.0	28	69	16	74	54	0	1	44	1.07
5734468--5734600	70	1.9	67	83	4	167	42	12	12	32	1.80
5740494--5740527	17	2.0	17	94	0	59	44	2	0	52	1.16
5740779--5740815	20	1.9	19	89	10	58	48	2	0	48	1.15
5745839--5745908	29	2.5	27	78	13	70	47	1	1	50	1.19
5746078--5746118	22	1.9	22	85	5	57	43	7	7	41	1.60
5746717--5746779	30	2.1	30	87	0	90	53	1	14	30	1.50
5748444--5748520	30	2.6	30	97	0	145	27	36	12	23	1.91
5758441--5758525	39	2.2	39	100	0	170	22	28	28	21	1.99
5768199--5768310	53	2.1	53	93	1	190	34	10	23	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5777638--5777683	10	4.5	11	76	13	53	32	0	0	67	0.91
5777648--5777697	21	2.5	20	83	3	55	34	0	4	62	1.14
5782876--5782901	12	2.2	12	100	0	52	7	15	23	53	1.67
5787827--5787857	13	2.4	13	94	0	53	32	0	6	61	1.21
5792711--5792755	19	2.4	19	81	7	56	40	0	2	57	1.11
5792730--5792764	11	3.0	11	91	8	52	37	0	0	62	0.95
5793557--5793602	21	2.1	22	92	4	76	13	13	6	67	1.41
5797579--5797619	20	2.0	20	86	9	57	48	0	0	51	1.00
5801284--5801445	56	2.9	56	84	3	229	23	27	13	35	1.92
5802307--5802362	21	2.7	21	80	8	69	25	28	14	32	1.94
5803084--5803167	18	4.7	18	90	0	114	30	20	21	27	1.98
5806118--5806211	46	2.0	46	95	0	170	35	29	12	22	1.91
5820199--5820420	75	3.0	75	88	2	322	45	9	13	31	1.75
5820396--5820954	138	4.1	138	91	1	863	40	6	4	48	1.52
5840407--5840452	20	2.3	20	88	0	65	34	13	15	36	1.86
5843404--5843452	25	1.9	24	84	12	62	30	12	16	40	1.85
5859345--5859741	50	7.9	50	79	0	391	21	24	16	37	1.93
5859369--5859741	24	14.9	25	65	13	115	21	23	16	38	1.93
5860731--5861004	138	2.0	139	81	2	327	46	13	9	31	1.74
5861461--5861536	36	2.1	36	95	0	134	34	10	27	27	1.90
5865016--5865066	21	2.4	22	87	6	70	47	5	1	45	1.38
5865016--5865075	21	2.9	21	82	7	68	43	5	3	48	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5865028--5865075	22	2.3	22	82	7	64	41	2	2	54	1.24
5865266--5865330	29	2.2	31	89	8	100	36	9	20	33	1.84
5868012--5868045	17	1.9	18	88	5	52	29	5	26	38	1.80
5871747--5871830	41	2.0	41	95	0	150	30	14	22	32	1.94
5872374--5872670	158	1.9	158	87	0	432	34	13	11	39	1.82
5873885--5874046	29	5.5	30	72	10	111	31	20	12	35	1.90
5873894--5874046	58	2.6	58	85	1	207	31	20	11	35	1.89
5884808--5884848	18	2.3	18	91	4	66	17	12	12	58	1.63
5890407--5890596	88	2.1	88	80	6	197	36	4	22	36	1.75
5890491--5890774	29	9.7	30	70	17	145	37	1	23	38	1.62
5890466--5890664	88	2.3	88	86	5	269	36	2	22	38	1.68
5890495--5890777	59	4.8	59	79	6	270	38	1	22	37	1.62
5890495--5890789	118	2.5	117	79	10	305	37	1	23	37	1.64
5891753--5891821	3	22.3	3	79	5	75	39	1	0	59	1.06
5892522--5892621	6	17.0	6	69	12	64	50	2	4	44	1.32
5892591--5892635	17	2.6	18	89	3	65	60	2	2	35	1.22
5892567--5892618	23	2.2	23	89	3	59	57	0	1	40	1.10
5892587--5892646	29	2.1	29	81	12	70	58	5	1	35	1.30
5893357--5893414	29	2.0	29	90	6	91	25	20	27	25	1.99
5897294--5897725	217	2.0	217	95	0	783	38	9	13	38	1.78
5909241--5909414	24	7.2	24	78	7	147	21	24	12	41	1.87
5909238--5909417	72	2.5	72	84	3	229	21	25	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5909238--5909414	48	3.7	48	80	1	194	21	24	12	41	1.87
5909491--5909545	27	2.0	27	96	0	101	29	12	7	50	1.67
5910286--5910314	3	9.7	3	100	0	58	31	0	0	68	0.89
5927890--5928023	24	5.6	24	81	1	144	17	24	15	41	1.89
5927919--5928043	48	2.6	48	83	2	153	20	23	12	44	1.85
5927919--5928043	24	5.2	24	85	0	106	20	23	12	44	1.85
5928870--5929023	3	51.3	3	81	0	146	33	10	0	56	1.33
5928869--5929023	15	10.3	15	82	0	166	32	10	0	56	1.35
5930443--5930476	5	6.6	5	93	6	59	17	0	0	82	0.67
5936110--5936170	30	2.0	30	100	0	122	37	16	32	13	1.87
5942290--5942417	50	2.6	50	87	2	186	37	20	23	18	1.94
5942290--5942449	50	3.2	50	82	3	162	36	21	21	20	1.95
5942467--5942803	40	8.5	40	77	6	267	33	24	15	26	1.95
5943368--5943435	17	4.1	17	78	1	75	44	2	1	51	1.25
5944413--5944438	3	8.7	3	100	0	52	69	0	0	30	0.89
5945122--5945621	162	3.1	162	93	0	820	25	18	13	43	1.86
5945695--5945851	29	5.5	26	72	16	107	33	30	1	34	1.69
5945695--5945888	58	3.3	58	87	1	282	31	32	3	32	1.73
5945722--5945887	29	5.7	27	71	20	122	31	32	3	32	1.75
5947880--5947938	11	5.5	11	71	15	52	55	0	3	40	1.16
5948230--5948884	68	9.6	68	93	0	1049	30	19	15	34	1.93
5960945--5961162	29	7.5	28	67	21	119	36	3	28	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5960993--5961198	29	7.1	27	66	23	100	36	3	27	32	1.74
5960919--5961198	59	4.8	58	87	4	377	36	3	28	31	1.75
5961203--5961445	30	8.0	30	87	3	310	35	2	23	38	1.67
5963179--5963212	17	2.0	17	94	0	59	11	26	23	38	1.89
5963191--5963266	30	2.5	30	93	2	134	14	19	22	43	1.87
5963318--5963388	11	6.5	11	72	15	58	56	0	4	39	1.19
5963316--5963386	31	2.4	29	88	4	97	56	0	4	39	1.19
5966113--5966170	28	2.1	27	90	9	91	29	8	31	31	1.87
5966153--5966461	58	5.3	57	85	5	404	35	2	29	32	1.72
5966153--5966461	116	2.7	115	89	4	453	35	2	29	32	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144