genome.fa.s7.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  137  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35315949--35316602	309	2.1	311	92	2	1100	31	17	18	31	1.95
35324363--35324439	29	2.6	29	73	20	70	35	6	1	57	1.33
35336230--35336299	29	2.4	29	80	4	79	17	4	12	65	1.41
35347381--35347433	16	3.4	16	71	5	54	58	7	7	26	1.52
35347375--35347433	31	1.9	31	92	0	100	54	10	10	25	1.65
35353786--35353811	3	8.7	3	100	0	52	0	34	30	34	1.58
35361392--35361428	16	2.4	15	86	4	56	37	27	10	24	1.88
35363727--35363806	26	3.0	27	73	12	74	38	13	10	37	1.79
35369502--35369538	2	18.5	2	100	0	74	48	0	0	51	1.00
35379056--35379108	28	1.9	28	84	3	72	43	13	22	20	1.86
35386643--35386667	1	25.0	1	100	0	50	0	100	0	0	0.00
35389393--35389431	17	2.3	17	100	0	78	23	7	23	46	1.78
35399521--35399575	24	2.3	24	96	0	101	54	9	12	23	1.66
35401364--35401426	32	2.0	32	83	0	81	42	6	6	44	1.55
35403400--35403449	3	16.7	3	100	0	100	68	0	0	32	0.90
35408535--35408565	15	2.1	15	93	0	53	67	0	16	16	1.23
35425745--35426041	162	1.8	159	83	7	393	34	21	20	22	1.97
35437848--35437899	10	5.0	10	77	13	52	32	0	1	65	1.04
35465862--35465961	30	3.4	28	69	17	78	53	5	4	38	1.42
35466211--35466245	3	11.7	3	100	0	70	31	0	0	68	0.90
35471765--35471804	16	2.4	17	87	4	55	57	5	5	32	1.42
35472326--35472390	17	3.9	17	69	13	55	46	1	13	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35472326--35472369	17	2.6	17	86	10	56	45	0	15	38	1.47
35474611--35474684	36	2.0	38	85	15	102	51	4	5	39	1.44
35474752--35474823	23	3.1	22	75	14	72	45	19	22	12	1.83
35474742--35474827	23	3.7	23	71	18	70	44	18	24	12	1.85
35474818--35474861	16	2.8	16	85	0	61	40	20	20	18	1.91
35474846--35474895	23	2.2	23	96	0	91	36	24	28	12	1.91
35476969--35477030	14	4.9	14	70	25	66	54	0	0	45	0.99
35476980--35477020	21	1.9	22	90	5	66	53	0	0	46	1.00
35482748--35482814	28	2.3	30	82	7	84	38	2	26	31	1.72
35482865--35482970	29	3.7	28	73	14	90	33	2	25	37	1.71
35482880--35483073	29	6.6	29	73	7	149	32	3	27	36	1.73
35483094--35483230	29	4.7	29	78	6	150	32	5	25	36	1.80
35482962--35483201	129	1.9	130	84	7	328	32	3	27	36	1.73
35483094--35483219	59	2.2	58	88	4	182	33	5	23	37	1.78
35484792--35484878	6	14.7	6	75	10	54	54	2	1	42	1.20
35484779--35484868	12	7.5	11	72	14	63	52	2	1	44	1.20
35484840--35484897	17	3.3	18	85	9	84	51	5	0	43	1.24
35488977--35489014	17	2.2	18	85	4	51	42	0	10	47	1.38
35493232--35493291	30	2.0	30	96	3	113	38	10	3	48	1.53
35496013--35496052	15	2.7	14	85	11	53	60	0	2	37	1.11
35497699--35497760	32	1.9	32	83	6	81	30	1	4	62	1.25
35497720--35497764	19	2.2	21	88	7	67	26	0	4	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35499174--35499250	40	2.0	38	82	7	93	57	6	0	36	1.25
35499194--35499278	40	2.1	40	95	0	152	49	7	2	41	1.43
35508102--35508172	22	3.2	22	77	0	79	63	14	5	16	1.48
35512787--35512848	9	6.6	9	74	15	54	33	1	3	61	1.22
35512813--35512853	20	2.0	21	85	4	57	34	4	2	58	1.32
35523832--35523910	31	2.5	31	82	13	92	53	1	0	45	1.08
35523841--35523907	30	2.2	30	82	17	86	53	1	0	44	1.09
35542513--35542563	2	25.5	2	91	0	84	47	0	1	50	1.12
35548372--35548715	92	3.8	92	88	1	512	41	1	8	48	1.42
35548372--35548713	182	1.9	183	93	0	596	42	1	8	48	1.42
35563056--35563080	2	12.5	2	100	0	50	0	52	0	48	1.00
35567257--35567300	2	22.5	2	95	4	81	52	0	47	0	1.00
35583423--35583466	15	3.1	15	77	12	56	43	0	4	52	1.22
35583422--35583479	28	2.1	28	86	0	80	44	0	3	51	1.18
35591560--35591584	12	2.1	12	100	0	50	52	0	16	32	1.44
35593877--35593937	31	2.0	31	93	0	104	32	9	11	45	1.73
35597629--35597660	6	5.3	6	100	0	64	18	0	0	81	0.70
35600438--35600463	2	13.0	2	100	0	52	50	0	0	50	1.00
35607513--35607545	15	2.2	15	94	0	57	48	3	0	48	1.17
35615019--35615062	22	2.0	23	86	4	63	38	0	0	61	0.96
35617912--35618014	45	2.2	48	75	19	110	26	0	11	61	1.37
35637815--35637853	19	2.1	19	85	0	51	35	5	15	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35643746--35643832	28	3.0	29	77	6	86	42	2	2	52	1.26
35653854--35653912	29	2.0	30	90	3	93	35	1	8	54	1.41
35653854--35653932	30	2.7	29	84	5	95	39	2	7	50	1.44
35666171--35666200	6	5.0	6	100	0	60	33	50	0	16	1.46
35674482--35674532	22	2.3	22	83	10	59	41	1	3	52	1.31
35677416--35677449	18	1.9	17	94	5	59	0	29	11	58	1.33
35685548--35685694	23	6.3	23	81	4	143	14	23	19	43	1.87
35685548--35685694	46	3.2	46	84	5	163	14	23	19	43	1.87
35685569--35685740	69	2.5	69	83	9	208	13	22	20	43	1.86
35690396--35690438	4	10.8	4	94	0	68	72	0	0	27	0.85
35699548--35699601	28	2.0	26	82	10	65	31	3	5	59	1.38
35720477--35720527	20	2.6	20	81	9	61	60	0	0	39	0.97
35722228--35722288	28	2.2	28	87	0	86	21	1	11	65	1.33
35722260--35722336	23	3.4	22	71	16	59	25	3	12	57	1.53
35723990--35724158	60	2.8	59	79	2	185	23	18	12	46	1.83
35724303--35724415	59	1.9	59	83	0	145	47	12	15	23	1.80
35724537--35724566	3	10.0	3	100	0	60	66	0	0	33	0.92
35726411--35726482	21	3.2	22	70	22	60	26	5	13	54	1.61
35727761--35727800	3	13.3	3	100	0	80	67	0	0	32	0.91
35729591--35729683	47	2.0	46	89	4	143	31	4	15	49	1.63
35729600--35729696	47	2.1	47	84	3	124	31	5	15	47	1.67
35733353--35733393	21	2.0	21	100	0	82	36	14	9	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35735711--35735779	31	2.3	31	82	7	88	26	13	17	43	1.85
35736025--35736087	30	2.1	31	88	8	94	46	0	31	22	1.52
35738526--35738566	21	1.9	22	90	5	66	43	9	0	46	1.36
35747998--35748054	31	1.9	28	82	10	69	35	1	28	35	1.68
35748275--35748453	70	2.5	71	87	0	252	32	8	18	39	1.82
35749204--35749276	23	3.5	23	68	24	70	39	4	12	43	1.61
35752454--35753035	294	2.0	290	96	1	1083	36	12	13	37	1.82
35757605--35757650	21	2.2	21	92	0	74	32	28	13	26	1.93
35767160--35767207	22	2.2	22	88	7	71	45	2	10	41	1.50
35774935--35775012	28	2.6	29	84	10	95	47	1	0	51	1.09
35785701--35786551	423	2.0	423	99	0	1666	37	16	15	30	1.90
35787876--35787901	11	2.4	11	100	0	52	15	7	0	76	0.99
35790750--35790776	13	2.1	13	100	0	54	14	7	14	62	1.51
35794707--35794818	46	2.4	46	93	0	188	20	26	25	26	1.99
35795661--35795706	11	4.3	11	76	15	51	32	8	4	54	1.51
35795662--35795705	21	2.1	21	87	8	63	34	9	4	52	1.54
35797832--35798730	444	2.0	445	89	1	1367	34	20	10	34	1.87
35800216--35800259	21	2.1	21	87	8	63	34	9	4	52	1.54
35803164--35803217	21	2.6	21	82	11	67	35	7	5	51	1.53
35806112--35806166	10	5.3	10	79	14	58	38	5	9	47	1.58
35806112--35806170	21	2.9	21	85	7	77	35	6	8	49	1.60
35806117--35806166	11	4.7	11	80	7	59	38	4	8	50	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35809323--35809366	21	2.1	21	87	8	63	34	9	4	52	1.54
35811770--35811844	24	3.1	24	90	0	123	26	10	8	54	1.62
35814505--35814644	69	2.0	66	86	10	192	12	21	21	45	1.84
35814471--35814644	23	7.5	23	77	10	140	12	22	20	44	1.85
35815557--35815619	24	2.6	24	82	0	81	26	14	11	47	1.77
35821009--35821083	32	2.4	30	78	10	87	46	9	2	41	1.50
35821750--35821833	41	2.0	41	100	0	168	51	7	11	29	1.65
35824873--35824947	32	2.2	33	86	11	100	49	12	1	37	1.48
35848739--35848802	29	2.3	28	86	7	87	40	4	6	48	1.49
35849228--35849273	23	2.0	24	87	12	69	80	2	4	13	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144