genome.fa.s7.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  40  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10039864--10041512	619	2.7	619	89	2	2461	27	18	15	38	1.91
10041047--10041277	62	3.7	62	90	3	340	25	16	16	41	1.89
10041499--10041611	54	2.1	54	83	3	138	23	22	16	38	1.93
10041106--10041843	332	2.2	336	82	5	884	27	18	14	39	1.90
10041999--10042556	62	9.0	62	91	1	868	26	18	15	39	1.91
10042760--10042868	54	2.0	54	87	0	155	25	17	17	39	1.91
10042368--10043103	332	2.2	333	85	4	953	27	18	15	38	1.90
10042824--10043321	215	2.3	216	83	5	596	29	18	13	38	1.88
10043260--10043507	62	4.0	62	93	0	388	27	18	16	38	1.92
10043712--10043824	54	2.1	54	85	3	147	23	21	16	38	1.93
10043040--10043840	403	2.0	397	81	5	920	26	19	15	38	1.91
10043777--10044253	214	2.2	216	80	5	518	29	17	14	37	1.90
10042309--10044458	951	2.3	950	93	0	3672	27	18	15	38	1.91
10044211--10044520	62	5.0	62	91	0	469	26	19	16	38	1.92
10043319--10045731	332	7.2	332	78	9	2306	26	18	15	38	1.91
10045056--10045164	54	2.0	54	87	0	155	25	17	17	39	1.91
10045388--10045493	54	2.0	54	84	0	140	26	17	15	40	1.89
10045879--10046126	62	4.0	62	93	0	388	27	18	16	38	1.92
10046775--10047084	62	5.0	62	93	0	503	27	20	14	37	1.92
10047265--10047417	54	2.6	60	71	16	147	24	18	17	38	1.93
10046896--10047755	332	2.5	333	81	5	1014	27	18	15	38	1.90
10047568--10048003	62	7.0	62	92	0	651	27	18	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10048208--10048320	54	2.1	54	85	3	147	23	21	16	38	1.93
10048658--10048967	62	5.0	62	93	0	503	27	20	14	37	1.92
10049171--10049273	54	1.9	54	84	4	136	24	18	17	39	1.91
10048779--10049638	332	2.5	333	82	5	1023	27	18	15	38	1.90
10049451--10049762	62	5.0	62	92	0	473	27	17	16	38	1.91
10050453--10050762	62	5.0	62	91	0	451	27	19	15	38	1.91
10050966--10051078	54	2.1	54	83	3	138	25	19	15	38	1.92
10050574--10051269	332	2.1	335	83	4	891	27	18	14	39	1.90
10051416--10051725	62	5.0	62	93	0	503	27	20	14	37	1.92
10051929--10052031	54	1.9	54	84	4	136	24	18	17	39	1.91
10051537--10052396	332	2.5	333	82	5	1023	27	18	15	38	1.90
10049376--10052246	963	2.9	976	89	4	4257	28	18	14	38	1.90
10052209--10052520	62	5.0	62	92	0	473	27	17	16	38	1.91
10053211--10053520	62	5.0	62	91	0	451	27	19	15	38	1.91
10053724--10053836	54	2.1	54	83	3	138	25	19	15	38	1.92
10053332--10054027	332	2.1	335	83	4	891	27	18	14	39	1.90
10054174--10054483	62	5.0	62	93	0	503	27	20	14	37	1.92
10054687--10054789	54	1.9	54	84	4	136	24	18	17	39	1.91
10054295--10055154	332	2.5	333	82	5	1023	27	18	15	38	1.90
10052134--10055004	963	2.9	976	89	4	4257	28	18	14	38	1.90
10054967--10055278	62	5.0	62	92	0	473	27	17	16	38	1.91
10055969--10056216	62	4.0	62	89	2	329	27	18	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10056420--10056532	54	2.1	54	83	3	138	25	19	15	38	1.92
10056028--10056723	332	2.1	335	83	4	891	27	18	14	39	1.90
10056870--10057179	62	5.0	62	93	0	503	27	20	14	37	1.92
10057383--10057485	54	1.9	54	84	4	136	24	18	17	39	1.91
10056991--10057850	332	2.5	333	82	5	1023	27	18	15	38	1.90
10057663--10057974	62	5.0	62	92	0	473	27	17	16	38	1.91
10058665--10058974	62	5.0	62	91	0	451	27	19	15	38	1.91
10059178--10059290	54	2.1	54	83	3	138	25	19	15	38	1.92
10059243--10059739	215	2.3	217	81	4	567	28	17	14	38	1.89
10059685--10059987	62	4.9	62	89	0	446	27	19	15	38	1.91
10060677--10060986	62	5.0	62	91	0	478	27	18	15	38	1.91
10061190--10061295	54	2.0	54	84	3	142	23	17	16	41	1.90
10061470--10061781	62	5.0	62	92	0	473	27	17	16	38	1.91
10060457--10062316	795	2.3	790	89	4	2761	27	18	15	38	1.90
10062472--10062781	62	5.0	62	90	1	453	27	19	14	38	1.90
10062985--10063097	54	2.1	54	83	3	138	25	19	15	38	1.92
10063050--10063546	215	2.3	217	81	4	567	28	17	14	38	1.89
10063492--10063794	62	4.9	62	89	0	446	27	19	15	38	1.91
10064212--10064250	20	2.0	20	85	10	53	25	7	15	51	1.70
10064483--10064792	62	5.0	62	92	0	487	26	18	16	38	1.92
10064996--10065101	54	2.0	54	84	3	142	23	17	16	41	1.90
10065275--10065586	62	5.0	62	91	0	464	27	17	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10064263--10066120	794	2.3	788	89	4	2771	27	18	15	38	1.91
10066276--10066585	62	5.0	62	92	1	462	26	19	16	38	1.92
10066765--10066917	54	2.6	61	73	16	167	23	21	16	37	1.93
10067293--10067602	62	5.0	62	90	1	462	27	18	14	38	1.90
10068311--10068613	62	4.9	62	90	0	464	27	19	14	38	1.91
10069301--10069610	62	5.0	62	92	0	478	26	18	16	38	1.92
10069814--10069926	54	2.1	54	86	3	156	23	19	17	38	1.93
10070316--10070623	62	5.0	62	91	1	494	27	18	16	38	1.91
10070776--10071021	62	4.0	62	89	3	354	27	20	15	36	1.93
10070776--10071021	123	2.0	125	87	3	363	27	20	15	36	1.93
10070375--10071364	401	2.5	401	90	3	1496	27	19	15	37	1.92
10071210--10071364	63	2.5	61	80	5	175	26	20	16	36	1.94
10070836--10071495	340	1.9	336	81	7	782	28	19	15	37	1.91
10071742--10072049	60	5.0	62	87	5	419	28	18	16	37	1.92
10071742--10072049	122	2.5	120	86	7	413	28	18	16	37	1.92
10072254--10072356	51	2.0	51	85	7	138	27	18	17	36	1.93
10072877--10073122	61	4.0	61	88	4	336	36	16	19	27	1.93
10073066--10073549	213	2.3	213	81	7	552	36	14	19	29	1.91
10073490--10073737	62	4.0	61	85	7	311	37	16	20	26	1.93
10072661--10074295	617	2.7	615	92	2	2684	37	14	18	29	1.91
10074112--10074295	61	3.0	63	83	7	243	36	16	18	27	1.93
10074446--10074693	62	4.0	62	94	1	417	39	15	18	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10073902--10074634	338	2.2	339	87	3	1032	39	14	18	28	1.90
10074744--10074893	79	1.9	79	86	8	216	32	10	22	35	1.87
10074927--10075115	62	3.0	61	87	3	263	39	16	16	26	1.90
10075266--10075515	62	4.0	62	89	0	349	38	15	17	29	1.90
10074001--10075640	819	2.0	819	90	2	2614	39	14	17	28	1.89
10075667--10075793	62	2.0	62	92	0	209	37	15	17	29	1.91
10075934--10076122	62	3.0	62	88	0	288	37	16	19	26	1.92
10076297--10076522	62	3.7	62	87	1	265	42	14	17	26	1.87
10075934--10076799	400	2.2	401	88	2	1321	39	14	18	27	1.89
10076273--10076522	123	2.0	124	85	0	331	40	14	18	27	1.89
10076673--10076799	62	2.0	62	95	0	227	36	14	18	29	1.92
10076396--10077352	277	3.5	278	87	1	1357	39	13	18	28	1.89
10076951--10077076	61	2.0	62	83	1	155	36	15	19	28	1.92
10077226--10077413	62	3.0	61	88	3	270	37	15	18	28	1.91
10076951--10077744	337	2.3	338	86	2	1119	39	15	17	27	1.90
10077565--10077859	62	4.9	62	80	9	351	38	17	17	25	1.92
10077641--10077857	113	1.9	113	93	0	371	40	18	17	23	1.91
10078018--10078266	62	4.0	62	90	0	381	38	15	18	27	1.91
10078317--10078467	79	1.9	79	85	8	209	32	10	22	34	1.88
10078501--10078689	62	3.0	62	87	0	279	38	17	16	26	1.92
10078862--10079089	62	3.7	62	86	5	275	41	14	16	27	1.88
10078857--10079089	122	1.9	124	86	1	335	40	15	17	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10076951--10079367	400	6.0	402	74	11	1889	39	14	17	27	1.90
10079241--10079367	62	2.0	62	90	0	200	36	14	18	30	1.91
10078970--10079920	278	3.4	277	87	2	1349	40	13	17	28	1.88
10079519--10079645	62	2.0	62	86	0	173	36	14	20	28	1.92
10079794--10079981	62	3.0	61	89	5	272	38	16	18	27	1.92
10080133--10080495	62	6.0	62	77	10	385	38	15	17	28	1.90
10079519--10080320	337	2.4	335	87	3	1153	40	14	17	28	1.89
10080133--10080495	113	3.0	124	80	8	376	38	15	17	28	1.90
10080647--10080894	62	4.0	62	92	1	399	38	15	18	27	1.91
10080257--10081933	402	4.2	401	73	10	1410	39	14	17	28	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144