genome.fa.s7.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  125  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30144105--30144137	16	2.0	17	88	5	50	12	15	15	57	1.65
30143865--30144374	265	1.9	267	86	5	721	30	15	17	36	1.91
30162687--30162723	12	2.8	13	88	12	58	81	2	0	16	0.81
30162686--30162725	19	2.1	19	85	0	53	82	2	0	15	0.77
30173747--30174003	128	2.0	128	88	1	381	38	17	15	28	1.91
30185098--30185140	10	4.4	10	85	2	52	23	0	9	67	1.19
30185696--30185756	27	2.1	28	85	8	79	67	3	0	29	1.07
30187861--30187986	45	2.8	45	83	4	139	30	7	22	40	1.80
30187885--30188061	45	3.9	45	79	2	158	31	5	22	40	1.77
30194743--30194781	19	2.1	19	90	0	60	41	15	5	38	1.69
30196417--30196486	29	2.4	29	80	7	79	41	17	8	32	1.79
30198526--30198558	12	2.8	12	90	0	57	15	39	3	42	1.62
30205127--30205159	12	2.8	12	90	0	57	15	39	3	42	1.62
30206619--30206678	27	2.1	29	84	6	79	30	1	1	66	1.11
30207590--30207637	20	2.5	19	83	10	53	52	4	12	31	1.58
30207599--30207637	20	1.9	21	89	5	62	56	5	10	28	1.54
30207671--30208163	247	2.0	245	86	3	677	36	20	15	27	1.93
30216616--30216658	22	1.9	23	90	4	70	27	6	9	55	1.57
30221938--30222009	31	2.2	33	83	9	87	52	9	2	34	1.49
30223641--30223696	27	2.1	27	80	9	62	30	8	3	57	1.47
30225106--30225178	32	2.2	32	85	7	94	57	8	1	32	1.37
30240714--30240748	2	17.5	2	100	0	70	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30245733--30245783	25	2.0	25	96	0	93	27	31	5	35	1.81
30252368--30252393	12	2.2	12	100	0	52	38	19	26	15	1.91
30252400--30252457	29	2.0	29	100	0	116	31	27	6	34	1.83
30254730--30254759	16	1.9	16	93	6	53	33	13	3	50	1.58
30254700--30254817	44	2.6	44	80	11	141	33	9	0	55	1.38
30259030--30259056	4	6.8	4	100	0	54	51	22	0	25	1.48
30279729--30279754	2	13.0	2	100	0	52	50	0	50	0	1.00
30283166--30283207	8	5.2	8	77	11	50	61	0	2	35	1.09
30283166--30283207	15	2.6	17	81	11	61	61	0	2	35	1.09
30283137--30283207	24	2.8	24	80	8	70	57	0	2	39	1.13
30284534--30284586	15	3.9	14	79	16	58	47	1	0	50	1.12
30285342--30285406	20	3.5	19	75	23	59	41	0	0	58	0.98
30288353--30288411	28	2.1	28	81	9	66	44	0	1	54	1.10
30299792--30299819	6	4.7	6	100	0	56	17	32	32	17	1.94
30301240--30301292	23	2.3	23	87	6	72	47	7	0	45	1.31
30303683--30303724	19	2.3	18	80	8	50	30	2	9	57	1.44
30306027--30306084	29	2.0	30	90	10	93	67	5	0	27	1.12
30306424--30306550	66	1.9	67	83	1	166	32	6	8	52	1.57
30312481--30312526	16	3.1	16	71	28	55	52	4	2	41	1.33
30314004--30314046	21	2.0	22	86	4	61	30	2	13	53	1.53
30314487--30314511	13	1.9	13	100	0	50	60	8	0	32	1.26
30323065--30323107	2	21.5	2	100	0	86	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30326896--30326924	3	9.7	3	100	0	58	68	0	31	0	0.89
30329578--30329630	16	3.3	16	82	10	56	39	0	1	58	1.09
30329580--30329625	16	2.9	16	84	9	60	41	0	2	56	1.11
30329976--30330037	25	2.4	26	78	10	74	67	0	0	32	0.91
30334714--30334799	39	2.3	37	89	4	127	51	19	9	19	1.74
30335046--30335141	41	2.3	41	92	3	158	36	26	6	31	1.81
30340322--30340361	21	1.9	21	89	0	62	27	25	12	35	1.92
30344284--30344322	18	2.2	18	85	0	51	23	10	5	61	1.48
30344454--30344500	23	2.1	22	84	4	58	59	0	2	38	1.09
30348578--30348623	24	1.9	24	86	8	67	58	6	2	32	1.36
30369755--30369800	23	2.0	24	83	12	60	69	6	0	23	1.11
30383073--30383647	286	2.0	286	97	0	1089	31	19	10	39	1.85
30385060--30385112	16	3.0	17	75	17	54	35	0	1	62	1.06
30387053--30387100	18	2.5	20	74	16	57	60	0	0	39	0.97
30390332--30390368	14	2.4	16	78	17	51	32	0	0	67	0.91
30390338--30390372	14	2.6	14	86	4	54	31	0	0	68	0.90
30397693--30397745	16	3.2	16	80	17	56	32	0	3	64	1.12
30398871--30398919	24	2.0	24	100	0	98	24	16	36	22	1.94
30401986--30402038	16	3.2	16	80	17	56	32	0	3	64	1.12
30403164--30403212	24	2.0	24	100	0	98	24	16	36	22	1.94
30406280--30406332	16	3.2	16	80	17	56	32	0	3	64	1.12
30407458--30407506	24	2.0	24	100	0	98	24	16	36	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30410570--30410622	16	3.2	16	80	17	56	32	0	3	64	1.12
30411746--30411794	24	2.0	24	100	0	98	24	16	36	22	1.94
30416027--30416075	23	2.0	25	92	7	84	26	16	34	22	1.95
30420579--30420629	26	2.0	26	96	0	93	33	19	17	29	1.95
30427206--30427254	24	2.0	24	100	0	98	22	36	16	24	1.94
30427302--30427339	20	1.9	20	84	10	51	52	13	13	21	1.73
30428380--30428415	18	2.1	17	90	10	56	69	2	0	27	1.02
30438203--30438240	19	1.9	20	89	10	60	36	5	5	52	1.47
30441761--30441853	48	1.9	48	89	4	143	24	11	19	44	1.84
30441761--30441853	24	3.9	24	85	0	123	24	11	19	44	1.84
30443342--30443396	29	1.9	28	88	3	83	41	16	21	20	1.90
30453828--30453899	6	12.2	6	71	19	53	54	2	1	41	1.23
30453849--30453900	18	2.9	18	85	0	68	57	3	0	38	1.17
30454438--30454579	49	2.9	49	80	2	169	16	23	20	38	1.93
30454514--30455033	49	10.4	49	72	11	360	16	24	19	40	1.91
30454344--30454884	100	5.5	98	79	7	414	16	24	20	39	1.92
30454512--30454884	100	3.8	100	88	2	493	16	24	19	39	1.92
30454658--30455035	149	2.5	148	85	4	422	15	25	18	40	1.90
30454625--30455091	249	1.9	251	87	2	699	16	24	18	40	1.90
30454537--30455035	100	5.0	100	83	3	467	16	24	19	40	1.90
30454344--30455035	200	3.5	197	77	6	551	15	24	19	40	1.91
30454846--30455083	100	2.4	98	85	5	291	16	25	18	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30459147--30459172	2	13.0	2	100	0	52	50	0	0	50	1.00
30459879--30459931	23	2.3	22	81	9	70	52	1	1	43	1.23
30475137--30475183	6	7.8	6	90	0	58	27	2	46	23	1.63
30476671--30476759	46	1.9	46	100	0	178	38	11	21	29	1.88
30480352--30480387	3	12.0	3	93	0	63	30	0	66	2	1.06
30481219--30481247	7	4.3	7	91	8	51	58	0	0	41	0.98
30482373--30482411	20	2.0	20	84	0	51	58	0	5	35	1.20
30492271--30492342	2	36.0	2	91	0	117	50	0	4	45	1.21
30495750--30495948	109	1.8	108	81	7	251	37	6	13	43	1.69
30498122--30498162	19	2.2	20	87	12	61	63	0	0	36	0.95
30501011--30501069	26	2.3	26	81	0	64	44	13	10	32	1.77
30501660--30501705	19	2.4	19	88	3	65	34	17	13	34	1.88
30501671--30501707	19	1.9	19	100	0	74	32	16	16	35	1.91
30514279--30514305	13	2.1	13	100	0	54	33	7	7	51	1.58
30518468--30518508	3	13.7	3	100	0	82	0	31	0	68	0.90
30526210--30526287	39	2.0	39	100	0	156	30	25	15	28	1.96
30526836--30526874	18	2.1	19	85	4	53	58	2	0	38	1.12
30533698--30533952	93	2.8	91	77	6	252	37	17	9	36	1.81
30534820--30534964	69	2.1	69	100	0	290	50	6	7	35	1.58
30537725--30537900	23	7.4	23	80	7	149	44	20	22	12	1.84
30537963--30538011	25	1.9	24	84	12	62	36	16	0	46	1.47
30540209--30540309	9	10.7	9	70	13	60	70	0	0	27	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30540255--30540311	18	2.9	19	80	12	71	73	0	1	24	0.92
30540484--30540525	11	4.1	11	76	17	54	28	0	0	71	0.86
30540480--30540525	19	2.4	18	89	10	74	32	0	0	67	0.91
30540555--30540606	18	2.9	18	72	11	52	34	0	0	65	0.93
30540579--30540628	20	2.5	20	78	12	57	44	0	0	56	0.99
30540621--30540650	15	2.0	15	93	0	51	23	6	0	70	1.11
30543647--30543686	2	20.0	2	100	0	80	0	50	0	50	1.00
30547101--30547210	54	2.0	54	92	0	184	48	9	1	40	1.45
30553578--30553625	23	2.1	23	100	0	96	16	8	27	47	1.75
30564062--30564555	247	2.0	244	91	1	801	35	7	15	41	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144