genome.fa.s7.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  15  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3689045--3689269	99	2.3	99	87	0	317	16	33	16	32	1.92
3690213--3690296	20	4.2	19	69	21	55	4	15	0	79	0.89
3690230--3690277	25	2.0	24	83	4	60	4	18	0	77	0.93
3690211--3690264	27	2.0	27	82	13	67	1	18	0	79	0.82
3690241--3690287	19	2.5	19	87	12	71	6	12	0	80	0.88
3690225--3690287	18	3.5	18	83	12	76	4	14	0	80	0.86
3691129--3691157	14	2.0	15	93	6	51	0	17	0	82	0.66
3691204--3691242	16	2.4	16	87	8	53	7	5	2	84	0.84
3692789--3692837	22	2.2	22	100	0	98	26	22	20	30	1.98
3695131--3695442	59	5.3	57	80	9	265	33	2	26	36	1.71
3695131--3695482	29	11.9	30	76	9	244	33	3	26	36	1.73
3697119--3697207	6	15.2	6	76	13	87	57	2	0	40	1.11
3697119--3697207	17	5.4	16	78	17	94	57	2	0	40	1.11
3697119--3697185	35	1.9	35	90	6	109	58	1	0	40	1.07
3697134--3697212	30	2.6	30	86	6	106	58	2	0	39	1.12
3698760--3699060	24	12.5	24	70	11	177	20	29	18	31	1.96
3698851--3699035	50	3.7	50	86	2	255	20	29	17	32	1.95
3698853--3699035	99	1.8	101	88	2	280	20	28	17	33	1.95
3698954--3699094	74	1.9	74	83	0	183	19	26	17	36	1.94
3699153--3699183	12	2.6	12	89	0	53	74	12	0	12	1.08
3699269--3699312	22	2.0	22	81	0	52	65	6	6	20	1.39
3700435--3700804	59	6.4	59	81	7	321	35	3	26	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3700434--3700835	29	13.7	31	72	15	209	35	3	26	33	1.75
3700693--3700838	59	2.5	59	93	2	249	34	2	24	38	1.67
3700446--3700858	30	14.1	29	72	13	276	35	3	25	35	1.73
3701275--3701316	22	1.9	22	90	0	66	26	28	19	26	1.98
3702761--3702849	17	5.2	17	79	0	88	51	4	5	38	1.46
3702911--3702976	20	3.1	20	76	16	69	66	21	3	9	1.33
3702925--3703023	12	8.3	12	79	2	119	67	19	4	9	1.34
3703028--3703146	22	5.3	22	83	8	134	66	18	7	7	1.41
3703028--3703146	47	2.6	47	84	7	140	66	18	7	7	1.41
3703098--3703138	10	3.9	10	87	12	64	65	14	9	9	1.46
3709910--3710015	24	4.2	24	71	13	88	20	27	17	33	1.96
3709834--3709951	50	2.4	49	77	7	130	18	24	19	37	1.94
3709873--3710015	76	1.9	74	84	5	189	21	24	18	34	1.96
3713745--3713850	18	5.9	18	74	4	79	33	24	18	22	1.97
3713745--3713850	36	2.9	35	72	5	95	33	24	18	22	1.97
3722207--3722325	58	2.1	58	93	3	204	60	6	1	31	1.32
3723170--3723211	9	4.4	10	85	8	52	0	14	0	85	0.59
3723170--3723211	10	4.3	9	83	16	57	0	14	0	85	0.59
3732163--3732189	13	2.1	13	100	0	54	37	14	7	40	1.74
3734247--3734297	27	2.0	25	81	14	59	41	3	3	50	1.39
3737562--3737598	19	1.9	19	88	0	56	54	8	13	24	1.66
3748651--3748961	30	10.4	29	74	9	196	35	3	27	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3748652--3748944	60	4.9	60	79	5	240	35	3	27	33	1.73
3748652--3748969	90	3.5	88	77	7	277	35	3	27	33	1.73
3751221--3751279	17	3.5	17	75	25	70	40	0	38	20	1.53
3751222--3751291	34	2.1	34	94	0	122	40	1	40	18	1.60
3755489--3755527	12	3.2	12	81	0	51	25	41	20	12	1.88
3758091--3758170	10	8.0	10	70	19	51	55	1	0	43	1.08
3758085--3758170	20	4.4	19	72	20	70	56	1	0	41	1.06
3764986--3765049	30	2.1	30	97	0	119	28	32	6	32	1.82
3765776--3765846	22	3.2	22	89	2	97	11	23	21	43	1.84
3770581--3770623	15	2.9	15	82	0	59	44	23	13	18	1.86
3776739--3776789	23	2.2	23	100	0	102	25	15	17	41	1.89
3781090--3781140	24	2.1	24	96	0	93	58	7	9	23	1.56
3785866--3785909	23	1.9	23	90	0	70	61	6	0	31	1.22
3785870--3785912	11	3.8	11	80	17	52	65	4	0	30	1.13
3787056--3787098	13	3.5	13	81	12	56	65	0	0	34	0.93
3788131--3788412	30	9.6	29	81	4	287	35	21	2	40	1.69
3788131--3788412	59	4.8	59	80	4	293	35	21	2	40	1.69
3788131--3788390	89	2.9	89	80	4	269	35	22	2	39	1.69
3799607--3800094	39	12.5	39	74	3	365	25	32	18	23	1.97
3799608--3800204	78	7.7	78	81	2	554	25	31	19	23	1.98
3802414--3802658	29	8.4	29	72	7	167	33	24	4	37	1.76
3805569--3805608	22	1.9	20	90	10	62	0	30	5	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3813469--3813510	13	3.0	14	75	10	50	35	0	23	40	1.55
3815161--3815238	31	2.5	32	76	14	83	33	2	0	64	1.08
3830103--3830210	41	2.6	41	88	2	146	25	27	25	21	1.99
3831826--3831875	4	12.2	4	87	4	73	48	26	2	24	1.62
3856850--3856951	35	2.9	35	83	4	116	14	26	22	36	1.93
3857196--3857314	63	1.9	63	82	5	152	26	6	31	35	1.82
3858440--3858513	20	3.9	20	75	10	75	54	5	4	36	1.43
3858781--3858826	21	2.2	21	84	7	58	26	19	10	43	1.84
3859260--3859318	12	5.4	11	76	13	50	54	1	0	44	1.10
3859506--3859567	32	1.9	32	83	6	81	37	3	4	54	1.38
3869633--3869765	70	1.9	67	85	7	178	33	12	12	42	1.79
3872936--3872966	6	5.2	6	92	0	53	0	0	29	70	0.87
3872589--3873497	183	5.1	183	91	5	1525	26	11	19	43	1.84
3873467--3873497	6	5.2	6	92	0	53	0	0	29	70	0.87
3879954--3879983	16	1.9	16	93	6	53	53	10	0	36	1.35
3881034--3881197	73	2.2	73	88	6	235	30	27	15	26	1.96
3884500--3884557	25	2.3	26	80	16	68	50	0	0	50	1.00
3884508--3884543	18	1.9	19	88	5	56	50	0	0	50	1.00
3884584--3884625	19	2.3	18	88	12	59	28	2	0	69	1.01
3886335--3886407	18	4.1	18	75	7	58	53	0	4	42	1.20
3886438--3886482	20	2.2	21	84	11	58	60	6	4	28	1.42
3887454--3887492	20	2.0	19	90	5	60	30	2	0	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3887574--3887778	88	2.3	90	84	5	267	33	8	20	37	1.84
3888290--3888348	31	1.9	31	83	13	77	42	1	5	50	1.34
3899048--3899074	7	3.9	7	100	0	54	40	0	0	59	0.98
3903233--3903280	14	3.5	13	78	21	53	39	2	2	56	1.23
3903474--3903528	28	2.0	27	82	10	67	45	1	1	50	1.22
3904411--3904435	5	5.0	5	100	0	50	40	20	20	20	1.92
3908759--3908790	14	2.2	15	94	5	57	71	3	0	25	1.00
3910340--3910364	6	4.2	6	100	0	50	0	16	20	64	1.30
3911803--3911837	16	2.2	16	89	0	52	45	8	0	45	1.34
3911846--3911883	18	2.2	17	90	4	58	21	2	2	73	1.07
3912988--3913038	26	2.0	26	84	0	66	41	5	3	49	1.45
3913547--3913592	25	1.9	23	86	8	65	32	4	6	56	1.45
3917960--3918020	26	2.4	25	73	13	61	54	6	11	27	1.61
3919583--3919652	17	4.4	17	76	21	80	42	1	0	55	1.08
3919583--3919652	23	3.0	23	78	12	81	42	1	0	55	1.08
3919578--3919615	11	3.5	11	86	10	51	39	0	0	60	0.97
3919583--3919634	6	9.0	6	83	8	72	44	0	0	55	0.99
3921494--3921611	30	3.9	30	84	2	157	38	26	1	33	1.67
3921499--3921611	60	1.9	60	92	0	190	39	23	1	35	1.65
3921647--3921682	15	2.3	15	90	4	54	44	13	0	41	1.44
3921663--3921836	29	6.0	30	77	14	177	32	28	4	34	1.78
3921668--3921832	87	1.9	87	82	7	210	33	29	4	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3921680--3921846	58	2.9	58	82	8	198	31	29	5	32	1.80
3923074--3923131	16	3.3	16	70	21	53	12	20	32	34	1.90
3923090--3923159	21	3.6	21	68	18	69	10	24	32	32	1.88
3923070--3923159	37	2.4	37	98	0	171	11	23	31	34	1.90
3928892--3928952	26	2.4	25	73	13	61	54	6	11	27	1.61
3933949--3933989	20	2.0	20	100	0	82	26	34	14	24	1.94
3934222--3934291	36	1.9	36	82	0	86	41	12	20	25	1.88
3934784--3934840	21	2.7	21	97	0	105	22	17	24	35	1.95
3934882--3934935	24	2.4	24	84	9	69	22	9	27	40	1.84
3934826--3935086	116	2.2	116	92	0	432	27	9	27	35	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144