genome.fa.s7.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  57  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11505937--11506008	13	5.9	12	76	14	58	54	1	0	44	1.08
11512976--11513027	25	2.1	24	86	10	70	5	17	1	75	1.10
11513045--11513119	26	3.1	24	75	16	66	54	1	0	44	1.08
11513046--11513112	13	5.5	12	79	13	66	52	1	0	46	1.09
11519875--11519959	21	4.0	21	83	3	98	36	8	16	38	1.79
11522623--11522671	22	2.2	22	96	0	89	22	8	14	55	1.65
11523456--11523532	41	1.9	40	86	7	111	37	9	20	32	1.84
11523468--11523527	20	2.9	21	70	22	63	40	8	20	31	1.82
11524141--11524180	2	20.0	2	90	10	64	50	0	2	47	1.14
11524340--11524379	18	2.3	18	86	4	55	32	5	0	62	1.17
11525573--11525620	2	24.0	2	100	0	96	50	0	50	0	1.00
11528492--11528538	21	2.1	22	88	7	69	31	2	0	65	1.04
11528503--11528536	18	1.9	18	88	5	52	32	0	0	67	0.91
11528505--11528568	30	2.1	30	83	11	78	40	0	0	59	0.97
11530190--11530260	35	2.0	35	94	0	124	32	18	21	28	1.96
11531568--11531596	6	4.8	6	100	0	58	68	0	13	17	1.20
11532825--11532868	18	2.4	18	92	0	70	47	9	25	18	1.77
11533392--11533458	25	2.5	27	76	13	77	19	10	1	68	1.26
11535202--11535408	91	2.3	91	90	0	324	30	27	16	26	1.97
11540821--11541159	169	2.0	169	97	0	633	33	29	12	25	1.92
11543046--11543093	18	2.7	18	80	6	53	43	2	2	52	1.24
11543552--11543608	2	28.5	2	100	0	114	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11546935--11547197	52	5.1	52	86	2	341	22	26	15	34	1.95
11546964--11547161	24	7.8	24	66	16	103	21	28	16	33	1.95
11549792--11549834	18	2.4	18	88	7	61	46	0	0	53	1.00
11549874--11549948	35	2.1	35	95	0	132	36	16	9	38	1.80
11554224--11554256	6	5.5	6	100	0	66	0	33	0	66	0.92
11554406--11554451	18	2.3	21	82	14	62	52	0	8	39	1.33
11557094--11557129	18	2.0	18	88	0	54	19	0	41	38	1.52
11564662--11564742	23	3.5	23	81	5	92	39	18	12	29	1.87
11564785--11564809	4	6.2	4	100	0	50	52	24	0	24	1.48
11564852--11564881	12	2.5	12	94	0	51	60	13	10	16	1.59
11565474--11565516	18	2.4	18	80	7	52	46	2	0	51	1.13
11571516--11571572	17	3.4	17	90	0	87	19	12	22	45	1.83
11573654--11573698	17	2.7	17	86	10	58	42	0	2	55	1.12
11576268--11576332	9	7.3	9	73	16	55	69	0	3	27	1.03
11576265--11576334	17	4.0	18	76	16	76	70	0	2	27	1.02
11576384--11576428	22	2.0	22	86	0	63	46	24	2	26	1.64
11577974--11578004	16	1.9	16	93	0	53	25	19	9	45	1.81
11579055--11579084	2	15.0	2	100	0	60	50	0	0	50	1.00
11579918--11580103	59	3.2	59	97	0	345	32	29	9	28	1.89
11583659--11583717	24	2.5	24	81	10	59	37	5	0	57	1.21
11583766--11583840	20	3.7	20	75	10	71	53	1	1	44	1.17
11583999--11584045	16	2.9	16	90	0	76	25	29	4	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11589303--11589352	26	2.0	25	96	4	91	32	4	4	60	1.34
11589309--11589350	14	3.1	14	75	25	54	33	4	2	59	1.31
11602312--11602363	7	7.6	7	95	4	97	13	11	0	75	1.06
11602300--11602417	6	18.3	6	92	4	101	15	6	4	73	1.19
11612564--11612716	58	2.6	58	79	8	159	45	1	1	51	1.20
11612612--11612709	26	3.5	26	70	15	79	42	1	2	54	1.19
11612611--11612694	29	2.9	30	75	15	95	40	0	2	57	1.12
11612797--11612891	44	2.1	46	88	7	142	36	30	4	28	1.76
11612873--11612928	16	3.5	16	92	0	94	28	32	5	33	1.80
11618323--11618458	37	3.7	37	91	0	218	36	26	21	16	1.94
11629957--11629986	14	2.1	15	93	6	53	30	0	0	70	0.88
11655618--11655651	17	2.0	17	94	0	59	50	11	17	20	1.77
11655935--11655980	24	1.9	24	100	0	92	17	10	30	41	1.84
11657450--11657483	17	2.0	17	94	0	59	20	20	35	23	1.96
11667891--11667920	15	1.9	16	93	6	53	30	23	6	40	1.80
11671689--11671762	37	2.0	37	100	0	148	16	40	21	21	1.91
11671880--11671939	26	2.4	24	81	10	75	33	1	6	58	1.34
11672316--11672352	18	2.1	18	94	0	65	37	24	21	16	1.93
11673685--11673750	20	3.2	20	82	6	71	34	19	24	21	1.96
11673698--11673761	20	3.2	20	84	6	67	32	20	25	21	1.97
11673668--11673761	27	3.5	27	89	0	134	35	20	24	20	1.96
11673668--11673777	27	4.1	27	80	13	72	34	21	24	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11673814--11673847	15	2.3	15	90	5	52	14	5	32	47	1.69
11673822--11673868	20	2.3	20	85	0	67	17	2	31	48	1.58
11680884--11680909	13	2.0	13	100	0	52	46	15	23	15	1.83
11680888--11681046	7	24.0	7	70	11	93	33	22	25	18	1.96
11680888--11681046	20	8.4	20	74	12	113	33	22	25	18	1.96
11680901--11681013	13	8.4	13	73	8	66	33	21	24	20	1.97
11680940--11681044	47	2.3	44	87	9	165	32	22	25	19	1.97
11681081--11681114	15	2.3	15	90	5	52	14	5	32	47	1.69
11681089--11681155	20	3.3	20	93	0	116	14	1	34	49	1.53
11681131--11681160	15	2.0	15	100	0	60	20	0	33	46	1.51
11682354--11682397	21	2.1	21	91	0	70	50	13	22	13	1.77
11700744--11700797	21	2.6	21	73	5	56	27	12	25	33	1.93
11701066--11701111	7	6.6	7	97	0	74	23	0	30	45	1.53
11702202--11702365	71	2.3	70	76	11	172	35	21	16	26	1.94
11711596--11711647	24	2.2	24	93	6	88	36	25	9	28	1.87
11712077--11712135	22	2.7	22	89	0	82	40	16	11	30	1.85
11716577--11716670	6	16.3	6	89	2	88	19	1	5	74	1.07
11716589--11716671	6	14.7	6	93	3	95	19	0	6	74	1.02
11717602--11717679	20	3.8	20	78	11	70	74	2	12	10	1.17
11718571--11718616	25	1.9	25	86	8	69	32	4	6	56	1.45
11720761--11720830	30	2.3	30	82	4	97	20	17	25	37	1.94
11720816--11720863	24	2.0	24	83	0	60	25	25	27	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11727948--11727985	18	2.1	19	90	5	60	42	15	0	42	1.47
11733455--11733509	21	2.6	21	86	13	85	47	18	14	20	1.83
11733526--11733567	22	1.9	22	90	0	66	38	30	23	7	1.82
11733515--11733619	26	4.2	26	81	9	137	39	24	27	8	1.84
11733521--11733632	26	4.7	24	81	10	106	43	25	24	6	1.77
11733691--11733739	25	1.9	24	84	12	62	36	20	0	42	1.52
11738292--11738350	21	2.8	21	100	0	118	44	18	13	23	1.86
11738291--11738360	21	3.3	21	92	4	106	47	18	12	21	1.82
11738380--11738505	22	5.4	22	87	10	146	39	26	26	7	1.83
11738399--11738488	27	3.6	26	87	10	118	40	25	26	7	1.83
11740982--11741078	36	2.7	34	79	10	106	34	29	16	19	1.94
11741079--11741158	24	3.3	24	87	6	117	36	23	6	33	1.80
11741084--11741181	48	2.0	48	80	7	110	38	24	6	30	1.80
11741853--11741899	3	15.0	3	91	8	76	63	0	36	0	0.94
11754711--11771888	355	48.3	355	98	1	33038	25	17	21	35	1.95
11757044--11757076	17	2.0	16	94	5	57	18	15	36	30	1.91
11757078--11757130	26	2.0	26	96	0	97	22	16	35	24	1.95
11771989--11811570	350	113.0	350	99	0	77798	34	21	17	25	1.95
11771989--11811570	701	56.5	700	99	0	77798	34	21	17	25	1.95
11811671--11869155	351	164.0	351	99	0	111812	25	17	21	35	1.95
11869256--11876174	346	19.9	348	96	2	12614	34	21	17	26	1.95
11869256--11936232	701	95.3	699	93	4	111385	34	21	17	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11876189--11936232	350	171.5	349	93	3	95277	34	21	17	25	1.95
11885472--11936232	350	145.5	350	97	1	95997	35	21	17	25	1.95
11936337--12068600	347	379.1	347	89	5	182356	25	18	21	33	1.96
11936337--12046825	348	317.9	348	92	3	175711	25	18	21	34	1.96
11936337--12068600	694	189.6	695	91	4	201188	25	18	21	33	1.96
12046833--12047144	86	3.6	86	93	0	536	18	35	25	20	1.95
12047089--12047178	33	2.6	34	87	8	130	20	34	27	17	1.95
12047009--12047264	119	2.1	119	86	2	352	18	33	26	21	1.97
12047129--12049448	86	27.1	86	82	5	2205	20	34	24	20	1.96
12046923--12047350	205	2.1	205	89	2	653	18	34	26	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144