genome.fa.s7.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  126  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30574235--30574265	3	10.3	3	100	0	62	35	0	0	64	0.94
30574639--30574691	21	2.4	22	84	9	72	66	0	0	33	0.92
30574638--30574691	18	2.7	21	83	16	71	66	0	0	33	0.92
30577819--30578129	155	2.0	152	97	1	586	30	7	19	43	1.78
30587735--30587766	6	5.3	6	100	0	64	15	53	0	31	1.43
30597366--30597445	29	2.6	30	86	5	99	47	13	8	30	1.73
30597380--30597445	31	2.2	29	89	5	96	46	13	9	30	1.74
30599841--30599889	18	2.8	17	81	6	53	57	0	4	38	1.18
30606193--30606223	15	2.1	15	93	0	53	9	9	0	80	0.90
30608901--30608928	6	4.7	6	100	0	56	0	14	0	85	0.59
30614715--30614748	14	2.4	14	95	0	59	35	11	2	50	1.54
30614710--30614748	14	2.7	15	84	11	55	35	10	5	48	1.59
30615975--30616073	46	2.1	47	80	15	109	65	2	4	28	1.21
30616019--30616221	9	22.0	9	67	16	71	59	1	2	35	1.24
30616114--30616174	26	2.3	27	83	8	72	57	1	1	39	1.18
30619583--30619616	2	17.0	2	100	0	68	50	0	0	50	1.00
30631738--30631766	2	14.5	2	100	0	58	0	48	0	51	1.00
30632833--30632910	40	2.0	40	87	5	113	56	1	3	38	1.26
30633948--30633975	1	28.0	1	100	0	56	0	0	100	0	0.00
30645036--30645117	29	2.8	28	74	7	74	57	3	1	37	1.24
30645090--30645114	12	2.1	12	100	0	50	48	0	0	52	1.00
30649024--30649056	15	2.3	15	89	5	50	60	3	9	27	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30649413--30649473	23	2.5	24	84	10	88	18	16	11	54	1.71
30649416--30649469	23	2.4	23	96	3	101	18	18	11	51	1.74
30652051--30652107	27	2.1	27	100	0	114	17	24	19	38	1.93
30655808--30655842	15	2.4	14	90	4	52	68	5	0	25	1.11
30670289--30670502	23	9.5	23	72	14	151	41	21	25	11	1.87
30670343--30670417	39	1.9	39	91	0	123	44	21	22	12	1.85
30670382--30670502	48	2.6	46	87	7	172	39	23	25	11	1.88
30672805--30672876	31	2.2	34	83	14	98	34	9	15	40	1.80
30678100--30678245	59	2.5	59	96	2	269	26	8	8	56	1.56
30686716--30686766	2	25.5	2	100	0	102	50	0	0	49	1.00
30690297--30690369	29	2.4	30	81	4	85	50	9	10	28	1.69
30690342--30690467	57	2.2	56	81	2	137	42	9	13	34	1.77
30691968--30692060	45	2.1	45	89	4	143	35	1	16	47	1.54
30702685--30702742	29	2.0	29	86	0	80	43	8	22	25	1.82
30717289--30717329	21	1.9	22	85	5	57	46	0	9	43	1.36
30717540--30717592	27	2.0	27	85	7	72	28	18	9	43	1.81
30721087--30721115	15	1.9	15	100	0	58	31	0	0	68	0.89
30722495--30722539	24	2.0	23	91	8	74	20	17	4	57	1.56
30723388--30723445	29	2.0	29	86	0	80	43	8	22	25	1.82
30729136--30729198	24	2.6	24	82	0	72	26	12	9	50	1.71
30736812--30736845	17	2.0	17	88	0	50	58	0	41	0	0.98
30739543--30739591	24	2.1	23	84	3	62	26	10	8	55	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30743063--30743096	3	11.0	3	93	6	59	32	0	0	67	0.91
30743492--30743578	28	3.1	27	67	15	70	50	8	1	40	1.39
30746757--30746790	17	1.9	17	88	5	50	58	0	0	41	0.98
30756065--30756106	18	2.4	18	81	18	61	42	2	0	54	1.13
30767803--30767861	31	1.9	31	86	6	84	28	20	16	33	1.95
30769552--30769614	32	2.0	32	93	0	108	38	31	11	19	1.86
30774352--30774391	22	1.9	20	85	10	53	47	7	22	22	1.76
30775886--30775966	30	2.6	32	80	11	96	53	9	3	33	1.52
30791306--30791349	23	1.9	23	85	0	61	61	2	4	31	1.28
30795605--30795647	16	2.9	15	80	10	52	20	2	11	65	1.36
30797380--30797473	47	2.0	47	97	0	179	42	5	28	23	1.76
30799108--30799165	30	1.9	30	86	10	82	41	3	17	37	1.66
30805230--30805324	48	2.0	48	89	0	145	30	12	12	44	1.80
30805474--30805508	10	3.4	10	84	7	52	57	2	0	40	1.14
30811053--30811114	16	3.9	16	73	12	56	69	3	3	24	1.18
30818899--30819048	54	2.7	54	79	12	178	42	9	13	35	1.76
30833925--30833949	6	4.2	6	100	0	50	16	16	32	36	1.90
30834405--30834496	28	3.2	27	67	23	71	44	7	10	36	1.68
30834347--30834508	62	2.7	61	88	6	226	41	8	14	35	1.75
30835186--30835261	30	2.5	30	86	0	116	28	15	7	47	1.74
30838439--30838618	54	3.2	57	82	9	210	41	8	14	35	1.77
30838465--30838670	107	1.9	110	80	8	242	42	8	15	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30839258--30839329	29	2.4	29	86	2	99	31	11	8	48	1.68
30845864--30845906	17	2.6	16	81	3	50	32	4	2	60	1.30
30848698--30848764	29	2.3	29	82	5	82	44	13	10	31	1.77
30849074--30849098	12	2.1	12	100	0	50	8	16	28	48	1.74
30859297--30859329	13	2.5	13	95	0	57	24	12	21	42	1.86
30859541--30859624	42	2.0	42	88	0	123	48	19	0	32	1.49
30860193--30860233	22	1.9	21	85	5	55	21	9	4	63	1.44
30864796--30865190	196	2.0	196	97	1	738	38	16	18	26	1.92
30871210--30871242	5	6.8	5	86	6	50	60	3	0	36	1.12
30871313--30871343	14	2.2	14	94	0	53	45	6	6	41	1.55
30878097--30878154	11	5.6	11	76	19	63	51	0	0	48	1.00
30879104--30879153	26	1.9	26	95	0	91	48	0	0	52	1.00
30882006--30882060	24	2.3	24	84	3	67	27	20	16	36	1.93
30882083--30882124	19	2.2	20	82	4	50	76	11	0	11	1.03
30883514--30883548	12	2.9	12	86	0	52	45	17	20	17	1.85
30909612--30909675	24	2.7	24	75	18	62	42	0	1	56	1.09
30927278--30927398	60	2.0	60	88	6	183	46	21	0	32	1.52
30943427--30943529	51	2.0	51	100	0	206	35	25	21	17	1.95
30951238--30951295	22	2.6	22	94	0	98	31	20	37	10	1.86
30959101--30959151	26	2.0	26	88	7	77	41	0	7	50	1.31
30959744--30959788	23	2.0	23	91	8	76	33	4	0	62	1.15
30962322--30962398	17	4.5	17	75	1	73	42	1	5	50	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30962334--30962397	34	1.9	33	87	3	92	43	1	4	50	1.32
30962334--30962412	34	2.3	33	80	6	86	48	1	3	46	1.28
30962757--30962824	26	2.6	26	95	0	127	32	25	16	26	1.96
30963341--30963439	29	3.5	27	81	13	94	36	22	5	36	1.76
30963398--30963679	59	4.8	59	83	3	374	32	32	2	32	1.70
30963398--30963679	118	2.4	117	90	1	451	32	32	2	32	1.70
30963634--30963711	27	2.7	29	82	7	88	32	32	2	33	1.72
30967809--30967840	7	4.6	7	96	0	55	28	31	15	25	1.96
30972392--30972422	2	15.5	2	100	0	62	48	0	51	0	1.00
30976248--30976299	9	5.6	9	76	15	52	63	1	0	34	1.06
30988105--30988129	1	25.0	1	100	0	50	0	0	0	100	0.00
30988841--30988886	17	2.8	17	83	3	58	32	2	6	58	1.36
30988892--30988923	13	2.5	13	94	0	55	59	0	3	37	1.13
30994999--30995064	16	3.9	16	71	11	51	34	3	4	57	1.34
31000711--31000755	23	2.0	23	86	0	63	31	13	20	35	1.91
31000974--31001093	58	2.1	58	93	3	206	47	20	0	31	1.51
31003494--31003546	27	2.0	25	85	7	70	41	0	0	58	0.98
31009245--31009300	29	1.9	29	82	7	69	37	3	1	57	1.27
31009317--31009475	79	2.0	79	98	0	309	33	8	13	44	1.74
31041517--31041583	10	6.8	10	79	8	75	26	0	4	68	1.08
31041517--31041583	29	2.3	29	92	2	107	26	0	4	68	1.08
31041517--31041669	29	5.1	29	76	11	89	33	1	3	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31042576--31042614	18	2.1	18	85	4	51	38	5	0	56	1.22
31044192--31044255	31	2.1	31	84	0	83	26	10	25	37	1.89
31044385--31044436	22	2.4	22	96	0	95	17	11	26	44	1.83
31046625--31046663	18	2.2	17	86	9	51	38	2	15	43	1.60
31047763--31047801	20	2.0	20	89	0	60	25	7	17	48	1.74
31059240--31059334	39	2.4	41	81	15	119	43	4	0	52	1.20
31059894--31059944	19	2.6	19	84	6	57	56	3	0	39	1.18
31060352--31060390	15	2.6	16	84	8	55	38	0	0	61	0.96
31060473--31060505	17	2.1	16	88	11	50	66	0	0	33	0.92
31061830--31061910	39	2.1	39	100	0	162	32	27	4	35	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144