genome.fa.s7.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  71  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14930857--14931000	30	4.8	30	78	9	134	36	22	2	38	1.66
14930868--14931000	59	2.2	60	78	7	137	36	22	2	38	1.67
14930876--14931000	29	4.2	29	79	9	126	35	23	2	39	1.68
14937649--14937754	55	1.9	55	98	0	203	42	11	23	22	1.86
14948502--14948530	9	3.2	9	100	0	58	20	0	0	79	0.74
14948517--14948598	26	3.1	26	73	13	85	32	4	3	58	1.37
14948646--14948683	6	6.3	6	100	0	76	34	50	0	15	1.45
14952161--14952212	26	2.0	26	100	0	104	50	7	3	38	1.50
14964327--14964378	25	2.1	25	88	0	77	9	23	11	55	1.64
14966039--14966080	21	2.0	22	85	4	59	64	2	19	14	1.39
14972201--14973645	479	3.0	482	87	2	2064	33	11	20	35	1.87
14986274--14986385	48	2.3	48	95	0	197	16	18	7	58	1.60
14986295--14986374	22	3.5	22	67	12	61	13	16	7	62	1.52
14988658--14988698	21	2.0	21	90	0	64	56	17	12	14	1.68
14989263--14989315	23	2.3	22	81	9	61	18	16	7	56	1.63
14990229--14990275	16	2.9	16	81	6	51	68	4	6	21	1.30
14991089--14991172	39	2.2	39	86	0	123	41	10	16	30	1.83
14992228--14992468	130	1.9	130	95	0	437	43	20	14	20	1.87
14998998--14999054	23	2.5	22	80	8	60	38	14	3	43	1.62
14999082--14999123	18	2.3	18	87	0	57	47	7	2	42	1.43
14999022--14999412	147	2.7	145	83	10	462	43	9	4	42	1.58
14999292--14999483	96	2.0	96	87	5	280	43	10	4	41	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14999295--14999518	96	2.3	95	84	6	265	43	12	4	39	1.62
14999771--14999803	16	2.1	16	88	5	50	15	0	9	75	1.03
14999898--14999944	3	15.7	3	100	0	94	65	0	0	34	0.93
14999945--14999969	3	8.3	3	100	0	50	32	0	0	68	0.90
15000416--15000683	42	6.4	42	83	5	330	38	24	16	20	1.92
15000411--15000683	84	3.3	83	86	3	377	38	24	16	20	1.93
15000416--15000683	126	2.1	126	87	4	398	38	24	16	20	1.92
15001092--15001127	18	1.9	19	88	5	56	8	11	5	75	1.19
15012571--15012707	58	2.3	59	81	6	154	32	9	27	31	1.88
15012599--15012742	59	2.5	57	79	6	155	30	6	29	34	1.82
15016120--15016163	21	2.1	21	82	0	52	34	25	13	27	1.93
15032945--15033030	42	2.0	42	97	0	163	26	29	24	19	1.99
15036312--15036345	11	3.0	11	91	4	50	32	0	2	64	1.08
15037199--15037235	2	18.5	2	100	0	74	51	0	0	48	1.00
15038357--15038404	23	2.0	24	88	4	71	39	37	4	18	1.70
15044844--15044906	24	2.6	24	84	0	81	26	14	9	49	1.74
15048818--15048848	14	2.1	15	94	5	55	12	6	3	77	1.08
15050631--15050688	21	2.8	21	89	0	80	32	25	13	27	1.94
15062836--15062893	28	2.1	28	100	0	116	20	17	0	62	1.33
15066021--15066062	21	2.0	21	90	0	66	26	26	30	16	1.97
15070230--15070280	25	2.0	25	100	0	102	45	11	11	31	1.77
15091320--15091362	22	2.0	22	85	0	59	16	9	13	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15095258--15095344	42	2.0	43	86	2	122	41	8	4	45	1.54
15096982--15097126	30	4.9	29	81	9	134	33	27	3	35	1.74
15101811--15102043	29	7.9	29	78	6	184	36	25	2	36	1.68
15101811--15102043	59	3.9	58	83	6	229	36	25	2	36	1.68
15106040--15106089	20	2.5	20	86	0	73	22	22	12	44	1.85
15109279--15109378	37	2.7	37	82	4	103	33	32	12	23	1.91
15109412--15109462	26	2.0	26	88	0	75	29	21	19	29	1.98
15110263--15110293	16	1.9	16	93	0	53	22	16	0	61	1.34
15113759--15113786	13	2.2	13	100	0	56	35	42	7	14	1.73
15117286--15117358	37	2.0	37	83	0	92	24	17	28	28	1.98
15118373--15118429	17	3.4	17	72	15	55	50	12	21	15	1.76
15120639--15120669	16	1.9	16	93	0	53	61	0	16	22	1.34
15121488--15121538	26	2.0	26	92	0	84	29	17	23	29	1.97
15121643--15121718	37	2.1	37	84	0	98	23	15	31	28	1.96
15121937--15121962	12	2.2	12	100	0	52	26	15	15	42	1.87
15125853--15125965	26	4.3	26	81	2	120	28	14	30	27	1.95
15133028--15133171	26	5.5	26	88	0	189	22	18	33	25	1.97
15134328--15134362	2	17.5	2	93	0	61	0	2	45	51	1.16
15136286--15136315	15	2.0	15	93	0	51	10	20	36	33	1.86
15138131--15138162	11	2.9	11	95	0	55	37	0	3	59	1.13
15138142--15138197	6	9.3	6	74	14	53	39	5	0	55	1.23
15138185--15138224	18	2.3	17	86	4	53	55	2	0	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15140135--15140233	30	3.4	31	84	8	93	39	25	3	32	1.71
15140152--15140266	29	3.9	29	86	11	139	33	26	2	36	1.71
15140252--15140411	29	5.6	29	74	10	150	33	25	1	39	1.64
15140167--15140592	58	7.3	58	84	5	411	32	26	3	38	1.72
15140484--15140576	29	3.2	27	72	11	69	33	26	3	36	1.73
15153034--15153081	6	7.8	6	77	13	53	41	6	0	52	1.27
15153023--15153080	17	3.6	17	77	13	68	39	5	1	53	1.33
15153088--15153120	12	2.8	12	86	4	50	57	3	0	39	1.14
15153677--15153805	64	2.0	64	100	0	258	35	13	9	41	1.77
15155091--15155463	29	12.8	28	69	16	161	34	26	2	36	1.71
15155189--15155561	58	6.4	58	77	9	332	33	26	2	37	1.71
15155225--15155540	29	10.9	28	68	17	119	33	25	2	38	1.68
15155189--15155558	57	6.4	59	80	6	366	32	26	2	38	1.70
15155186--15155571	59	6.6	58	79	8	222	33	26	2	37	1.70
15159639--15159808	30	5.7	30	84	6	204	33	2	25	38	1.69
15159639--15159799	59	2.7	59	83	9	213	34	2	23	39	1.68
15168011--15168274	30	8.9	29	78	10	212	40	4	20	34	1.72
15168011--15168251	90	2.7	89	84	7	276	41	4	19	34	1.71
15168025--15168274	60	4.2	58	81	9	254	40	4	20	35	1.73
15169885--15170336	40	11.3	39	72	11	223	25	19	23	32	1.98
15169946--15170337	38	9.8	39	75	11	262	25	19	23	31	1.98
15169895--15170621	78	8.8	78	78	10	561	24	18	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15169923--15170667	44	18.0	44	75	11	467	24	18	23	33	1.97
15171076--15171127	24	2.2	24	89	0	77	32	15	23	28	1.95
15171817--15171869	11	5.3	10	78	17	65	0	20	0	79	0.74
15171818--15171869	13	3.9	14	80	12	56	0	21	0	78	0.74
15179295--15179515	91	2.5	89	80	6	266	41	4	19	34	1.71
15179304--15179481	61	2.9	59	80	4	185	41	4	19	34	1.71
15179297--15179503	30	6.9	29	81	6	182	40	4	20	34	1.73
15181131--15181285	82	1.9	82	86	2	222	44	5	3	46	1.44
15181651--15181692	21	2.0	21	86	4	59	45	30	4	19	1.71
15191364--15191391	3	9.3	3	100	0	56	32	0	0	67	0.91
15193774--15193798	8	3.1	8	100	0	50	16	0	0	84	0.63
15200293--15200329	19	1.9	19	88	0	56	13	21	21	43	1.87
15209611--15209861	126	2.0	128	88	1	380	45	16	12	24	1.82
15213876--15213967	40	2.4	37	80	8	96	30	28	19	21	1.98
15214114--15214150	18	2.1	18	89	0	56	24	27	0	48	1.51
15216519--15216594	11	6.8	11	68	24	52	42	1	2	53	1.23
15223117--15223199	25	3.3	25	74	1	76	21	15	27	34	1.94
15225683--15225714	16	2.0	16	93	0	55	53	3	18	25	1.59
15226445--15226536	24	3.8	24	88	2	132	25	25	22	27	2.00
15241943--15242107	80	2.1	80	97	0	312	35	13	23	27	1.92
15243425--15243463	13	2.8	13	88	7	51	38	2	12	46	1.56
15245206--15245255	20	2.7	19	77	20	52	44	2	2	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15245234--15245349	62	1.9	61	85	5	164	42	1	5	50	1.34
15248266--15248656	52	7.6	52	88	2	526	26	14	24	34	1.94
15254222--15254285	30	2.1	30	85	0	83	20	12	9	57	1.62
15259345--15259495	23	6.5	23	79	12	148	10	24	21	43	1.84
15261487--15261612	9	13.6	9	66	23	57	61	2	1	34	1.19
15261501--15261534	16	2.1	17	94	5	61	67	0	2	29	1.05
15261799--15261942	9	15.6	9	68	22	68	65	1	6	26	1.26
15261771--15261830	28	2.1	29	87	6	88	61	3	5	30	1.33
15261875--15261916	10	4.4	10	76	11	52	69	0	7	23	1.13
15261855--15261916	28	2.1	28	88	5	88	64	1	6	27	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144