genome.fa.s7.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  129  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31953663--31953715	15	3.4	15	77	10	52	37	1	0	60	1.08
31961451--31961505	24	2.3	25	81	9	69	49	12	5	32	1.64
31962630--31962672	18	2.4	18	88	7	61	53	0	0	46	1.00
31964070--31964138	31	2.3	30	80	9	77	36	8	11	43	1.72
31975354--31975699	173	2.0	173	98	0	665	26	15	13	45	1.82
31981026--31981067	21	2.0	21	81	13	50	45	9	9	35	1.69
32000194--32000235	19	2.3	19	87	4	59	28	16	9	45	1.79
32006122--32006165	22	2.0	23	86	4	63	47	2	0	50	1.13
32007816--32007903	43	2.1	43	91	2	142	45	9	23	21	1.80
32007988--32008032	22	2.0	22	82	0	54	42	6	6	44	1.57
32026450--32026489	16	2.4	16	83	4	53	62	5	2	30	1.29
32029246--32029304	11	4.9	12	76	13	50	52	1	0	45	1.10
32034817--32034854	7	5.4	7	96	0	67	15	26	26	31	1.96
32037395--32037429	15	2.2	17	90	10	56	54	2	0	42	1.15
32043508--32043639	63	2.1	63	91	0	210	40	25	6	27	1.80
32043780--32043831	26	2.1	26	85	7	72	69	9	3	17	1.31
32048324--32048360	17	2.2	17	100	0	74	56	0	5	37	1.22
32053316--32053359	22	2.0	22	86	8	63	25	4	2	68	1.20
32057820--32057854	16	2.1	17	89	5	54	31	5	0	62	1.18
32064788--32064820	16	2.1	16	100	0	66	39	18	30	12	1.87
32068359--32068609	113	2.3	110	82	10	296	23	19	15	40	1.90
32068397--32068887	59	8.3	59	76	11	404	25	17	15	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32068397--32068887	121	4.2	119	81	8	465	25	17	15	41	1.88
32068968--32069015	22	2.2	22	84	0	60	18	2	33	45	1.61
32068976--32069027	22	2.4	22	86	0	68	19	3	30	46	1.68
32069274--32069421	48	3.1	48	66	18	128	50	4	5	39	1.46
32069120--32069624	186	2.8	183	86	5	697	47	3	5	43	1.44
32069120--32069624	92	5.6	93	87	4	678	47	3	5	43	1.44
32069356--32069511	45	3.4	45	67	20	117	47	5	5	41	1.49
32069120--32069626	86	5.6	86	83	10	506	47	3	5	43	1.43
32069743--32069777	17	2.1	16	89	5	52	37	8	0	54	1.31
32073583--32073718	61	2.2	59	76	12	139	37	15	18	28	1.91
32073792--32074328	58	9.3	57	75	10	466	41	15	16	26	1.88
32073676--32073869	100	1.9	101	87	4	284	42	12	14	30	1.82
32073792--32074194	173	2.3	174	84	5	519	40	16	17	25	1.89
32076333--32076706	59	6.4	59	79	6	359	35	3	29	32	1.73
32076332--32076489	30	5.4	30	65	23	77	36	4	28	30	1.77
32076427--32076679	29	8.7	29	69	19	125	35	3	29	31	1.73
32076481--32076742	29	9.0	29	69	22	140	35	2	28	32	1.71
32076600--32076746	30	5.0	29	73	19	117	38	2	25	33	1.70
32076662--32076753	29	3.1	27	71	15	69	43	2	21	32	1.65
32078596--32078638	13	3.1	14	80	19	54	18	13	25	41	1.88
32078667--32078703	17	2.2	17	90	0	56	37	0	2	59	1.12
32078719--32078749	16	1.9	16	93	0	53	58	3	0	38	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32087430--32087767	60	6.0	54	71	13	191	29	19	16	34	1.94
32087523--32087819	113	2.6	112	87	6	422	30	19	15	34	1.93
32087583--32087777	54	3.5	54	68	11	144	28	20	17	33	1.95
32088301--32088368	34	2.0	34	88	5	102	41	4	0	54	1.20
32089981--32090005	7	3.6	7	100	0	50	56	16	12	16	1.68
32094995--32095062	31	2.4	28	79	13	75	45	8	7	38	1.63
32095191--32095217	9	3.0	9	100	0	54	77	0	11	11	0.99
32095197--32095259	15	4.2	15	69	18	51	74	0	9	15	1.06
32096649--32096702	19	2.6	21	77	11	58	7	27	0	64	1.20
32098873--32098899	7	3.9	7	100	0	54	85	0	0	14	0.61
32111612--32111659	2	24.0	2	100	0	96	50	0	0	50	1.00
32120842--32120873	6	5.3	6	100	0	64	0	65	0	34	0.93
32127280--32127316	9	3.8	10	83	16	51	54	2	0	43	1.14
32128754--32128801	18	2.7	18	83	0	60	22	31	0	45	1.53
32128754--32128795	6	7.0	6	88	0	57	21	30	0	47	1.51
32132182--32132275	40	2.4	38	79	8	93	27	29	22	20	1.98
32132400--32132467	6	11.5	6	78	9	50	26	25	0	48	1.51
32132419--32132467	18	2.7	18	87	6	73	22	28	0	48	1.50
32132421--32132463	12	3.5	13	87	9	56	23	30	0	46	1.52
32132612--32132657	22	2.1	22	95	0	83	32	15	4	47	1.65
32132617--32132668	22	2.4	22	80	6	61	34	17	3	44	1.67
32134234--32134268	3	11.3	3	93	6	61	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32138393--32138513	23	5.2	23	82	11	156	11	25	23	39	1.88
32138393--32138513	48	2.6	46	87	7	172	11	25	23	39	1.88
32138478--32138552	39	1.9	39	91	0	123	12	22	21	44	1.85
32138512--32138605	23	4.0	23	75	16	86	11	25	19	43	1.84
32140472--32140531	30	1.9	30	86	6	84	43	5	11	40	1.63
32154212--32154403	94	2.1	93	86	3	262	47	10	3	38	1.56
32155701--32155747	2	24.5	2	91	8	80	46	0	0	53	1.00
32164734--32164789	19	3.0	19	86	2	78	60	3	0	35	1.14
32164739--32164791	18	2.9	18	83	13	63	64	3	0	32	1.12
32164946--32164994	25	1.9	25	84	12	64	59	4	8	28	1.45
32165277--32165341	31	2.1	31	85	0	85	49	1	9	40	1.44
32165428--32165484	23	2.5	22	75	8	60	63	3	0	33	1.12
32173058--32173124	29	2.3	30	81	2	82	46	13	1	38	1.52
32177349--32177382	3	11.3	3	100	0	68	32	0	35	32	1.58
32179324--32179583	60	4.3	60	87	3	330	25	20	16	36	1.94
32180475--32180565	30	3.1	29	80	10	87	63	5	5	25	1.38
32181069--32181108	12	3.3	12	82	0	53	2	37	37	22	1.68
32181716--32181740	13	1.9	13	100	0	50	56	0	8	36	1.29
32182769--32182823	20	2.8	20	80	0	74	40	23	25	10	1.87
32182817--32182874	10	5.8	10	81	0	71	22	24	36	17	1.95
32182819--32182874	20	2.8	20	91	0	94	23	23	37	16	1.93
32183038--32183477	83	5.3	83	91	3	638	50	3	5	39	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32183161--32183309	45	3.5	46	64	27	119	51	5	6	36	1.49
32183608--32183655	12	3.7	12	77	20	51	41	10	0	47	1.37
32183618--32183652	17	2.1	16	89	5	52	48	8	0	42	1.33
32183608--32183665	28	2.1	28	83	0	71	43	12	0	44	1.41
32187387--32187561	59	2.9	58	85	4	242	34	16	20	29	1.94
32190149--32190194	2	23.0	2	100	0	92	50	0	0	50	1.00
32191743--32191786	3	14.7	3	90	9	72	0	34	0	65	0.93
32195431--32195591	23	6.9	23	83	6	166	10	24	23	40	1.86
32196239--32196277	19	2.2	17	86	9	51	56	0	5	38	1.22
32197059--32197120	30	2.0	32	84	12	85	29	11	0	59	1.32
32197112--32197184	9	8.0	9	74	7	58	28	4	1	65	1.19
32197105--32197156	18	2.8	18	77	8	61	32	5	1	59	1.32
32197678--32197723	14	3.4	14	82	8	60	65	0	0	34	0.93
32197716--32197769	19	2.8	19	74	20	58	61	0	3	35	1.14
32198102--32198213	10	12.3	9	69	23	67	27	2	1	67	1.14
32198103--32198200	17	5.6	18	71	19	55	26	3	2	68	1.15
32198102--32198187	27	3.1	27	75	18	63	25	3	1	69	1.11
32198120--32198223	43	2.3	46	82	9	117	27	2	1	67	1.16
32198159--32198251	36	2.7	35	83	6	109	30	3	3	63	1.26
32198263--32198300	18	2.1	19	85	5	51	26	0	2	71	1.00
32198281--32198329	15	2.9	15	78	21	53	28	2	6	63	1.30
32200450--32200475	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32201860--32201912	8	6.0	8	79	16	52	66	0	0	33	0.92
32201839--32201930	28	3.3	28	82	8	107	63	1	1	34	1.09
32201811--32201881	20	3.7	20	70	21	53	64	0	2	32	1.08
32201860--32201930	19	3.9	17	79	15	72	66	1	1	30	1.09
32201916--32201950	11	3.3	11	84	8	54	77	0	2	20	0.90
32201898--32201950	21	2.6	21	88	5	74	71	1	3	22	1.12
32201890--32201950	19	3.1	18	77	13	59	72	1	3	22	1.09
32201811--32201930	9	12.8	9	69	20	77	65	0	2	31	1.12
32201852--32201950	10	10.1	10	72	13	64	66	1	2	30	1.09
32202236--32202296	9	6.4	9	76	12	52	26	0	1	72	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144