genome.fa.s7.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  121  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28584821--28584872	21	2.5	20	84	3	59	63	1	11	23	1.37
28586891--28587085	30	6.6	29	72	11	146	36	19	2	41	1.63
28586906--28587086	58	3.1	59	83	7	224	34	21	2	41	1.66
28587075--28587337	28	9.4	28	73	18	176	29	28	3	38	1.73
28587060--28587330	139	2.0	137	79	13	297	30	27	2	38	1.72
28587098--28587368	56	4.8	57	81	8	324	30	28	3	38	1.73
28587383--28587418	17	2.2	17	90	5	56	16	16	8	58	1.61
28591110--28591155	24	1.9	24	81	0	56	50	10	28	10	1.71
28599192--28600365	92	12.5	92	81	9	1329	33	16	18	30	1.94
28599648--28599693	23	2.0	23	100	0	92	30	17	17	34	1.93
28599556--28599784	115	2.0	115	93	0	395	33	16	18	31	1.93
28599464--28599874	207	2.0	208	93	0	698	33	16	18	31	1.93
28602433--28602638	30	6.9	28	79	11	205	37	20	1	40	1.64
28602448--28602638	60	3.2	60	89	0	303	37	18	2	41	1.63
28602448--28602661	60	3.6	58	83	8	241	36	19	2	41	1.64
28602685--28602989	29	10.6	28	69	18	130	29	27	3	38	1.75
28602637--28602989	57	6.1	58	81	5	369	29	27	3	39	1.74
28602658--28602990	172	1.9	172	85	2	454	29	27	3	39	1.73
28603102--28603137	17	2.2	17	90	5	56	19	8	5	66	1.38
28603946--28604063	20	5.9	20	70	7	96	55	6	16	21	1.63
28603946--28604063	40	3.0	40	77	2	112	55	6	16	21	1.63
28615628--28615671	23	1.9	23	86	9	63	27	13	11	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28617738--28617908	29	5.9	28	77	15	120	33	6	26	33	1.82
28617766--28617937	29	5.9	29	79	8	154	33	5	26	34	1.80
28617771--28617937	88	1.9	88	81	4	203	34	5	25	35	1.79
28617767--28617938	59	2.9	57	78	8	175	33	5	25	35	1.80
28619621--28619684	25	2.6	25	80	5	67	18	9	50	21	1.75
28620869--28620952	41	2.0	42	97	2	161	32	9	30	27	1.88
28622417--28622460	19	2.3	18	85	11	61	34	0	0	65	0.93
28623329--28623402	6	12.0	6	75	11	60	52	2	0	44	1.15
28623327--28623379	20	2.8	20	80	11	67	45	1	0	52	1.11
28623333--28623410	12	6.2	12	71	14	52	55	3	0	41	1.18
28625202--28625251	15	3.1	18	68	31	58	32	26	4	38	1.75
28625193--28625291	30	3.3	30	92	2	164	34	21	4	40	1.72
28625189--28625326	60	2.3	59	83	9	183	34	26	2	36	1.71
28625189--28625326	30	4.7	29	83	4	152	34	26	2	36	1.71
28634549--28634601	25	2.1	26	82	10	65	50	5	0	43	1.25
28635410--28635475	31	2.2	27	82	15	69	45	1	3	50	1.26
28643335--28643444	58	1.9	58	85	3	152	50	5	4	39	1.46
28643362--28643412	19	2.6	19	81	12	59	50	1	3	43	1.31
28645419--28645477	6	9.8	6	98	0	109	18	0	64	16	1.29
28646862--28646899	16	2.4	16	95	0	67	34	21	7	36	1.82
28646921--28647037	46	2.5	46	81	0	117	25	10	14	49	1.75
28649126--28649198	31	2.4	31	79	9	87	54	19	6	19	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28649145--28649204	31	1.9	31	93	0	102	53	18	6	21	1.67
28651504--28651541	2	19.0	2	100	0	76	50	0	0	50	1.00
28653893--28653945	25	2.1	27	86	10	76	5	56	0	37	1.23
28655077--28655121	2	22.5	2	95	0	81	48	0	2	48	1.13
28656531--28656577	23	2.0	23	87	8	67	61	8	2	27	1.36
28658538--28658564	3	9.0	3	100	0	54	66	0	0	33	0.92
28660152--28660178	13	2.1	13	100	0	54	40	7	7	44	1.60
28663893--28663936	16	2.6	17	82	10	63	4	18	0	77	0.94
28664756--28664780	13	1.9	13	100	0	50	32	0	8	60	1.26
28666152--28666185	15	2.3	15	89	0	50	35	5	0	58	1.22
28667186--28667232	24	2.0	24	83	8	60	57	6	4	31	1.43
28668172--28668211	21	1.9	21	90	10	64	27	7	5	60	1.45
28672880--28673044	50	3.3	50	78	1	177	30	15	24	29	1.96
28680186--28680252	33	2.0	34	85	2	91	19	22	1	56	1.50
28681596--28681624	13	2.1	14	93	6	51	65	0	0	34	0.93
28687769--28687805	2	19.0	2	94	5	67	48	0	0	51	1.00
28688064--28688110	25	2.0	23	87	8	67	29	2	17	51	1.57
28693902--28693927	3	8.7	3	100	0	52	69	0	0	30	0.89
28699215--28699267	22	2.5	21	78	6	54	64	3	1	30	1.22
28703207--28703267	26	2.4	25	78	10	61	68	4	0	26	1.09
28706377--28706560	90	2.0	91	92	1	307	40	11	14	33	1.83
28706979--28707056	26	3.0	26	100	0	156	15	19	26	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28712301--28712718	35	12.1	34	74	14	141	11	14	14	59	1.61
28712302--28712863	60	9.3	59	72	17	277	12	14	12	60	1.60
28712644--28712803	25	6.2	25	80	11	103	10	16	11	62	1.54
28712740--28712805	25	2.7	24	93	6	114	13	15	10	60	1.59
28712337--28712814	20	24.4	20	75	15	387	12	14	13	59	1.62
28712794--28712843	15	3.3	15	81	10	66	18	12	12	58	1.64
28712890--28713399	15	33.7	15	66	20	149	60	10	14	13	1.58
28712885--28713399	20	26.5	20	68	20	222	60	10	14	13	1.58
28712885--28713312	35	12.8	35	71	20	226	61	10	14	14	1.57
28712882--28713397	65	8.1	60	72	16	271	60	10	14	13	1.58
28712905--28713386	45	11.2	45	68	21	207	60	10	14	13	1.58
28712905--28712981	25	3.1	25	71	14	68	61	12	14	11	1.58
28712985--28713398	10	42.4	10	68	18	128	61	10	14	13	1.57
28712920--28713351	25	17.7	25	70	16	180	60	10	15	13	1.58
28713100--28713399	5	60.0	5	71	16	115	61	11	15	12	1.58
28713085--28713386	35	8.9	35	80	11	276	61	10	14	12	1.57
28713798--28714196	106	3.7	107	91	3	649	40	17	7	34	1.77
28713798--28714196	216	1.8	216	92	2	685	40	17	7	34	1.77
28714529--28714841	110	2.9	107	94	2	531	39	17	8	34	1.81
28719808--28719882	20	3.5	20	75	16	69	13	20	6	60	1.55
28719807--28719902	25	4.0	25	77	13	112	12	18	9	59	1.59
28719890--28721282	27	55.1	24	65	19	267	6	13	17	62	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28719997--28721299	32	40.2	32	75	13	774	6	13	17	62	1.50
28721199--28721479	22	12.9	22	67	17	133	6	13	18	61	1.52
28720039--28721466	32	43.8	32	75	14	760	6	13	17	62	1.50
28719823--28721397	5	301.8	5	65	17	430	6	13	17	62	1.52
28723617--28724384	20	39.4	20	69	19	259	7	13	16	61	1.54
28723637--28724580	32	27.4	35	72	17	135	7	13	16	62	1.52
28723797--28724653	32	26.9	32	78	12	482	6	13	17	62	1.50
28723828--28724430	42	14.3	42	69	19	343	6	13	17	63	1.49
28723783--28724607	74	11.1	74	75	15	644	6	13	17	62	1.50
28724132--28724187	17	2.8	22	71	25	68	7	10	16	66	1.44
28724087--28724580	88	5.7	87	78	11	430	6	13	16	64	1.47
28723919--28724388	22	22.3	22	65	21	147	6	12	17	63	1.49
28724370--28724653	33	9.1	32	87	6	349	6	14	16	63	1.50
28724302--28724654	28	11.6	28	73	20	139	6	13	16	63	1.49
28723632--28724590	5	186.4	5	66	18	223	7	13	16	62	1.52
28725310--28725402	43	2.2	43	100	0	186	41	17	10	30	1.83
28727655--28727747	43	2.2	43	100	0	186	41	17	10	30	1.83
28743709--28743758	26	1.9	26	87	0	73	26	8	18	48	1.75
28743720--28743774	26	2.1	26	89	0	83	30	10	9	49	1.69
28748027--28748096	35	2.0	35	91	0	113	28	15	21	34	1.94
28754738--28754778	22	1.9	21	90	5	64	19	0	7	73	1.07
28762604--28762628	5	5.0	5	100	0	50	20	0	40	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28763840--28763897	28	2.0	29	90	3	91	72	1	0	25	0.94
28764113--28764148	15	2.4	15	86	13	56	38	0	0	61	0.96
28769065--28769096	2	16.0	2	100	0	64	50	0	50	0	1.00
28772174--28772216	21	2.0	22	86	4	61	53	30	4	11	1.57
28780030--28780074	23	2.0	23	87	8	67	48	2	0	48	1.13
28780030--28780068	21	1.9	21	89	5	62	46	2	0	51	1.14
28792465--28792500	2	18.0	2	88	0	54	50	5	0	44	1.25
28794564--28794608	14	3.2	14	75	12	56	40	4	0	55	1.20
28794556--28794610	28	2.0	27	89	7	83	40	5	0	54	1.23
28801186--28801235	27	1.9	25	84	8	64	62	8	4	26	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144