genome.fa.s7.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  96  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22510458--22510491	16	2.1	16	88	0	50	23	23	0	52	1.47
22514786--22514967	23	8.4	23	73	18	149	43	21	22	12	1.86
22514831--22514967	23	6.2	23	79	14	162	41	21	23	13	1.88
22514788--22514953	64	2.7	63	90	7	259	43	21	22	12	1.86
22514854--22514930	41	1.9	40	86	5	111	42	22	22	12	1.87
22518034--22518112	40	2.0	38	82	4	95	39	11	20	29	1.87
22518219--22518252	14	2.4	14	100	0	68	11	5	23	58	1.55
22518806--22518877	23	3.4	23	72	21	84	52	22	2	22	1.59
22518819--22518882	20	3.2	20	72	24	71	51	25	1	21	1.57
22518794--22518882	40	2.2	40	95	2	160	49	22	2	25	1.61
22519998--22520050	14	3.8	14	73	9	54	33	26	18	20	1.96
22526759--22526807	25	1.9	25	83	4	62	53	2	2	42	1.24
22529190--22529233	21	2.1	21	91	0	70	68	0	4	27	1.09
22529147--22529226	11	7.1	11	70	26	53	68	0	1	30	0.97
22530803--22530893	39	2.4	39	85	7	107	29	17	23	29	1.97
22530820--22530899	39	2.0	40	95	2	144	30	17	22	30	1.97
22537600--22537672	31	2.4	30	78	13	78	39	13	12	34	1.82
22538920--22538965	20	2.2	21	84	3	58	8	13	0	78	0.97
22545921--22545964	22	2.0	23	82	13	56	61	4	2	31	1.28
22546301--22546368	27	2.5	27	85	2	82	29	22	29	19	1.98
22548893--22548940	20	2.5	18	83	12	60	77	0	16	6	0.97
22548898--22548941	21	2.2	20	84	12	54	79	0	15	4	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22548898--22548940	19	2.2	21	88	12	65	79	0	16	4	0.90
22560649--22560689	17	2.4	18	88	8	59	70	7	0	21	1.11
22563898--22564022	43	2.9	43	82	0	160	31	26	12	29	1.93
22567037--22567236	41	4.9	41	83	2	240	18	27	22	32	1.97
22567206--22567260	27	2.0	27	92	0	92	14	29	27	29	1.95
22569300--22569354	12	4.7	12	75	8	51	70	20	3	5	1.22
22569300--22569457	42	3.7	42	87	3	201	73	17	3	5	1.17
22569339--22569456	21	5.8	20	69	14	80	75	16	3	4	1.10
22575981--22576172	94	2.1	93	85	1	258	31	22	17	28	1.97
22588630--22588705	31	2.5	31	79	12	93	32	5	5	56	1.44
22593810--22593852	19	2.3	19	80	8	52	37	6	4	51	1.50
22597492--22597561	31	2.2	32	82	7	81	34	0	1	64	1.03
22601248--22601410	82	2.0	81	89	3	247	39	14	5	40	1.69
22601252--22601421	81	2.1	80	86	6	243	41	12	5	40	1.66
22605818--22605862	2	22.5	2	95	0	81	51	2	0	46	1.13
22608083--22608121	19	2.0	20	85	14	55	35	7	7	48	1.61
22608453--22608493	13	3.1	13	85	3	55	46	14	0	39	1.45
22608454--22608496	14	3.1	14	86	3	61	41	16	0	41	1.48
22608454--22608509	27	2.1	27	82	0	67	41	17	3	37	1.67
22617426--22617462	17	2.1	18	90	5	58	24	16	13	45	1.83
22618183--22618229	19	2.4	21	75	17	55	53	10	0	36	1.36
22621415--22621466	14	3.7	14	78	0	59	30	19	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22627473--22627508	5	7.0	5	93	3	54	2	22	0	75	0.94
22635767--22635846	28	2.9	28	79	7	92	40	2	2	55	1.27
22636783--22636843	29	2.1	29	90	0	95	36	4	6	52	1.49
22636801--22636843	14	2.9	15	77	16	54	37	4	6	51	1.50
22637205--22637247	18	2.4	17	85	11	59	51	0	2	46	1.13
22637692--22637743	22	2.5	20	76	17	52	30	1	9	57	1.42
22638243--22638291	24	2.0	24	84	7	64	61	0	32	6	1.21
22638436--22638470	18	1.9	18	88	0	52	28	0	11	60	1.32
22638478--22638555	23	3.3	23	74	15	61	24	0	10	65	1.23
22638630--22638672	21	2.1	21	86	4	61	27	0	11	60	1.31
22640830--22640918	45	2.0	45	88	0	133	37	29	14	19	1.91
22641198--22641257	7	8.6	7	78	7	50	51	28	0	20	1.47
22641205--22641278	28	2.7	28	87	2	105	52	25	0	21	1.47
22641241--22641286	21	2.2	21	100	0	92	54	23	0	21	1.45
22644282--22644323	4	10.2	4	84	5	57	0	30	0	69	0.89
22644295--22644322	13	2.2	13	100	0	56	0	21	0	78	0.75
22645751--22645794	18	2.4	17	85	14	61	27	0	2	70	0.99
22646914--22646950	19	1.9	19	89	10	58	8	16	10	64	1.47
22653534--22653590	17	3.3	18	73	11	57	63	10	3	22	1.42
22655560--22655589	15	1.9	16	93	6	53	10	13	0	76	1.01
22664885--22664911	14	1.9	14	100	0	54	44	7	25	22	1.79
22669723--22669753	5	6.2	5	100	0	62	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22689722--22689780	15	4.0	15	74	17	52	40	1	0	57	1.09
22689720--22689795	27	2.7	27	85	4	89	42	1	0	56	1.07
22689731--22689795	28	2.4	27	86	2	85	41	1	0	56	1.08
22690670--22690706	2	18.5	2	100	0	74	51	0	48	0	1.00
22696233--22696272	18	2.2	18	86	8	55	40	2	0	57	1.12
22696259--22696288	15	1.9	16	93	6	53	56	3	0	40	1.16
22696366--22696395	14	2.2	14	94	5	53	53	0	3	43	1.17
22704276--22704325	3	16.7	3	100	0	100	32	0	0	68	0.90
22704324--22704350	3	9.0	3	100	0	54	0	0	33	66	0.92
22706602--22706654	9	5.6	9	77	18	54	54	5	0	39	1.24
22706602--22706654	20	2.8	18	83	13	54	54	5	0	39	1.24
22707341--22707394	21	2.6	21	79	5	56	16	9	20	53	1.70
22716424--22716458	18	1.9	18	88	11	54	71	5	0	22	1.07
22723813--22724247	29	15.0	28	68	19	148	35	3	27	33	1.73
22723856--22724003	57	2.6	57	82	5	174	37	2	26	33	1.71
22723812--22724241	58	7.4	57	76	11	279	35	3	27	33	1.72
22723985--22724241	59	4.4	59	79	13	183	35	2	26	35	1.71
22723903--22724228	177	1.8	177	80	7	394	37	3	25	34	1.72
22726162--22726255	11	8.1	12	70	22	76	56	2	1	40	1.18
22726161--22726253	17	5.4	17	84	7	125	55	2	1	40	1.19
22726175--22726221	23	2.0	23	92	8	78	55	0	0	44	0.99
22726161--22726221	6	10.5	6	77	13	65	54	0	1	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22726161--22726255	35	2.7	34	85	7	129	55	2	1	41	1.18
22726592--22728255	201	8.2	200	87	3	2064	23	23	18	34	1.96
22726579--22728190	813	2.0	814	88	2	2375	23	23	18	34	1.96
22728291--22728526	78	3.0	78	81	4	289	28	20	27	23	1.99
22728804--22729194	51	7.9	49	82	5	369	10	24	23	40	1.87
22730421--22730476	18	3.1	18	80	10	60	3	19	3	73	1.13
22730431--22730488	18	3.2	18	78	11	64	1	24	1	72	1.03
22730443--22730495	18	2.9	19	75	13	58	0	26	1	71	0.96
22730431--22730491	24	2.5	24	76	7	70	1	24	1	72	1.03
22731251--22731281	11	2.7	11	95	5	53	0	25	0	74	0.82
22736002--22736070	27	2.4	27	83	11	77	39	2	27	30	1.71
22736002--22736421	29	14.5	28	66	19	105	38	4	25	32	1.76
22735994--22736479	117	4.2	114	76	9	412	38	4	25	31	1.77
22735994--22736479	58	8.4	59	79	8	396	38	4	25	31	1.77
22736031--22736455	175	2.4	172	77	9	414	38	4	24	32	1.76
22738403--22738478	18	4.4	17	82	11	91	53	1	1	43	1.17
22739312--22739669	30	12.0	29	81	8	330	34	21	3	40	1.70
22739308--22739647	60	5.7	60	81	4	377	34	22	3	40	1.70
22739308--22739699	90	4.4	90	80	5	393	33	22	3	40	1.71
22740487--22740516	15	2.0	15	100	0	60	26	26	6	40	1.81
22742469--22742494	11	2.4	11	100	0	52	50	0	26	23	1.50
22745243--22745281	19	2.0	19	90	5	60	46	0	15	38	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22745326--22745431	46	2.4	44	87	4	167	27	12	24	35	1.91
22745523--22745565	19	2.2	20	83	4	52	32	4	13	48	1.63
22746691--22746765	33	2.2	32	76	17	80	62	10	10	16	1.53
22747339--22747486	30	4.9	30	83	4	174	36	20	2	40	1.65
22747342--22747486	60	2.4	60	87	3	193	35	20	2	41	1.64
22747334--22747495	90	1.8	89	86	2	218	35	21	3	40	1.69
22748882--22748926	20	2.2	21	80	11	58	46	22	13	17	1.83
22756334--22756508	93	1.9	91	81	6	210	38	18	9	33	1.84
22756679--22756737	28	2.0	29	90	6	93	62	0	1	35	1.05
22756746--22756810	10	6.6	10	75	8	53	64	3	1	30	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144