genome.fa.s7.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  37  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9528903--9528993	37	2.5	37	88	0	137	32	17	17	31	1.94
9528697--9529175	241	2.0	244	82	2	581	31	21	15	31	1.95
9533780--9533873	46	2.0	47	89	2	145	20	19	23	37	1.94
9538586--9538628	22	1.9	23	86	13	63	72	2	0	25	0.97
9538666--9538709	21	2.2	20	83	4	52	65	4	2	27	1.23
9538713--9538759	23	2.1	22	88	7	69	48	4	8	38	1.53
9539043--9539078	19	1.9	19	88	5	56	33	0	0	66	0.92
9539042--9539084	19	2.3	19	80	8	52	30	0	0	69	0.88
9545791--9545847	25	2.3	24	82	11	80	35	0	5	59	1.20
9550794--9550903	54	2.0	54	94	0	193	23	17	21	37	1.94
9556451--9556481	15	2.0	16	93	6	55	77	0	22	0	0.77
9557810--9558086	30	9.5	30	71	18	201	36	1	27	33	1.68
9557808--9558087	59	4.8	58	88	4	411	36	1	27	34	1.68
9558160--9558497	162	2.1	162	96	0	622	42	13	18	26	1.86
9559852--9559959	6	18.7	6	74	11	82	49	1	1	47	1.23
9559888--9559970	41	2.0	41	90	0	130	53	0	3	43	1.18
9559858--9559938	17	4.7	17	85	7	101	51	2	1	44	1.22
9559929--9559970	17	2.4	18	88	4	59	50	0	4	45	1.23
9560271--9560716	76	5.8	76	95	0	784	32	17	14	34	1.91
9560698--9561142	92	4.8	92	98	0	847	27	16	20	35	1.94
9569812--9569871	28	2.1	28	87	0	84	26	10	33	30	1.89
9569870--9569943	37	2.0	37	86	7	105	35	5	28	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9569908--9570145	59	4.0	59	92	2	363	35	3	28	32	1.75
9569920--9570145	29	7.7	30	68	19	111	35	3	28	31	1.74
9570221--9570559	162	2.1	162	93	0	570	42	12	17	27	1.85
9575694--9575765	35	2.1	35	83	0	90	31	16	19	31	1.94
9575699--9575792	35	2.7	35	76	0	89	30	18	20	30	1.96
9580879--9580933	23	2.3	24	78	9	60	63	9	7	20	1.47
9586882--9586911	15	2.0	15	100	0	60	46	33	6	13	1.69
9587233--9587330	26	3.8	25	72	19	76	39	2	5	53	1.35
9587242--9587328	28	3.2	27	72	26	78	40	1	4	54	1.29
9588649--9588710	31	1.9	33	87	12	94	30	3	0	66	1.08
9591491--9591757	131	2.0	131	97	0	507	44	5	16	33	1.70
9593233--9593430	59	3.4	59	80	8	183	36	3	27	32	1.74
9593397--9593489	30	3.1	29	84	6	114	34	1	21	43	1.60
9594646--9594690	19	2.4	18	82	13	56	42	2	6	48	1.41
9595432--9595516	6	14.8	6	74	9	79	55	1	1	42	1.15
9595443--9595516	17	4.4	17	89	3	114	56	1	1	40	1.16
9595431--9595488	23	2.5	23	85	0	80	55	1	0	43	1.10
9595443--9595518	11	6.7	11	73	11	55	56	1	1	40	1.16
9596650--9596684	18	1.9	18	88	0	52	48	5	2	42	1.41
9606148--9606220	36	2.0	36	100	0	146	32	35	16	15	1.90
9616127--9616198	36	2.0	36	97	0	135	33	15	16	34	1.90
9621272--9621310	18	2.2	18	86	9	53	20	10	10	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9621284--9621326	18	2.5	17	82	14	52	18	11	11	58	1.63
9621272--9621326	18	3.2	17	78	14	51	20	10	10	58	1.62
9623601--9623657	22	2.6	22	91	0	96	26	24	21	28	1.99
9623646--9623724	41	2.0	41	87	2	115	22	18	31	26	1.97
9623653--9623744	41	2.3	41	83	5	107	26	17	28	28	1.98
9628860--9628968	40	2.7	40	83	7	130	22	14	31	31	1.94
9639034--9639095	31	2.0	31	81	12	74	61	3	4	30	1.33
9639191--9639221	16	2.0	15	93	6	53	0	12	58	29	1.35
9639418--9639498	41	2.0	41	85	0	108	64	11	2	22	1.38
9639417--9639442	12	2.2	12	100	0	52	69	7	0	23	1.14
9640820--9640870	24	2.1	25	81	3	59	54	7	1	35	1.40
9645517--9645551	17	2.1	17	89	5	54	42	11	2	42	1.55
9646685--9646715	9	3.4	9	100	0	62	19	0	0	80	0.71
9647316--9647804	256	1.9	256	98	0	951	44	8	12	34	1.72
9655351--9655462	56	2.0	56	98	0	215	37	21	6	34	1.79
9657737--9657762	3	8.7	3	100	0	52	65	0	0	34	0.93
9664545--9664597	18	2.7	19	77	14	54	18	15	7	58	1.60
9674688--9674743	21	2.5	21	82	8	58	35	0	3	60	1.14
9675783--9675824	20	2.1	20	95	0	75	26	19	16	38	1.92
9684643--9684681	17	2.3	17	86	0	51	46	23	12	17	1.83
9687810--9687874	30	2.2	30	88	5	96	30	12	9	47	1.72
9692723--9692763	21	2.0	21	95	0	73	43	14	14	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9692933--9692962	16	1.9	15	93	6	51	33	26	0	40	1.57
9699752--9699817	13	5.1	13	80	14	82	78	0	21	0	0.75
9699762--9699815	18	3.0	18	82	15	67	79	0	20	0	0.73
9699750--9699817	27	2.5	28	90	7	104	79	0	20	0	0.73
9699750--9699817	31	2.3	28	80	16	84	79	0	20	0	0.73
9699750--9699815	15	4.4	14	77	19	71	80	0	19	0	0.72
9701167--9701835	49	13.7	48	75	5	500	33	16	27	22	1.95
9701165--9701835	98	6.9	98	79	4	649	33	16	27	22	1.95
9701169--9701835	147	4.5	147	78	5	589	33	16	27	22	1.95
9703705--9703800	30	3.2	30	76	8	106	38	16	5	39	1.71
9703696--9703827	59	2.2	60	76	6	135	36	19	6	37	1.77
9708150--9708175	13	2.0	13	100	0	52	23	38	0	38	1.55
9716548--9716674	23	5.4	23	85	5	148	11	21	22	45	1.82
9716572--9716718	69	2.1	71	85	12	198	12	22	20	44	1.85
9727593--9727634	14	3.2	13	83	6	50	59	0	9	30	1.29
9728083--9728123	18	2.4	16	88	8	55	73	2	0	24	0.96
9735996--9736035	21	1.9	21	84	0	53	25	20	12	42	1.86
9736429--9736486	6	9.7	6	96	0	89	62	0	0	37	0.96
9737753--9737815	28	2.2	29	80	11	76	25	7	28	38	1.84
9737795--9738258	29	15.9	30	73	13	287	33	4	25	36	1.76
9737771--9738153	58	6.6	58	79	9	334	33	5	24	35	1.79
9737771--9738256	59	8.3	59	76	7	363	33	4	24	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9737913--9738255	88	3.9	87	77	8	299	34	3	24	37	1.74
9738840--9738886	25	1.9	24	83	12	60	21	21	0	57	1.41
9739189--9739235	16	2.9	15	84	12	58	40	4	0	55	1.19
9739901--9739966	11	5.9	11	75	8	62	54	4	0	40	1.21
9739894--9739963	28	2.5	28	83	4	79	52	5	0	41	1.25
9739908--9739984	34	2.3	34	83	0	100	54	6	1	37	1.35
9739878--9739984	17	6.3	17	75	7	85	52	6	0	40	1.34
9739899--9739966	6	12.0	6	72	12	54	54	4	0	41	1.20
9740313--9740698	206	1.9	206	93	0	664	22	22	19	36	1.95
9752733--9752844	58	1.9	58	83	3	145	35	7	23	33	1.82
9752753--9752860	29	3.6	30	73	6	85	36	4	24	35	1.76
9753611--9753665	29	1.9	28	81	3	65	21	21	0	56	1.42
9754652--9754708	28	2.0	28	83	6	71	54	7	1	36	1.38
9762383--9762472	23	4.0	23	84	7	96	11	26	21	41	1.86
9762375--9762498	46	2.8	45	75	16	114	11	24	22	41	1.86
9762440--9762487	23	2.1	23	96	3	89	12	20	31	35	1.90
9768543--9768568	7	3.7	7	100	0	52	30	11	11	46	1.76
9769540--9769585	23	2.0	23	91	0	74	10	26	21	41	1.86
9769589--9769634	23	2.0	23	95	0	83	13	19	30	36	1.90
9780251--9780305	21	2.6	21	94	5	94	34	20	12	32	1.90
9792458--9792489	15	2.1	15	100	0	64	18	12	6	62	1.50
9798737--9798767	3	10.3	3	100	0	62	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9799821--9799937	20	5.8	20	74	9	94	35	24	23	15	1.94
9799837--9799937	27	3.7	27	89	0	148	34	24	24	15	1.95
9799821--9799930	7	16.3	7	71	7	84	35	24	24	15	1.94
9799917--9799970	11	4.7	11	78	17	56	29	27	25	16	1.97
9799932--9799971	11	3.6	11	89	0	62	25	27	30	17	1.97
9800005--9800039	15	2.4	15	90	4	54	14	5	31	48	1.67
9800014--9800060	20	2.3	20	88	0	76	14	2	34	48	1.56
9800036--9800065	15	2.0	15	93	0	51	23	0	33	43	1.54
9800049--9800116	21	3.2	21	95	2	118	20	0	33	45	1.52
9806026--9806061	3	12.3	3	94	5	65	69	0	0	30	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144