genome.fa.s7.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  135  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34368257--34368328	35	2.1	35	89	7	112	27	12	13	45	1.80
34378546--34378592	24	2.0	24	82	0	58	29	0	2	68	1.02
34384501--34384571	31	2.3	31	83	9	83	43	7	14	35	1.72
34393638--34393689	2	26.5	2	96	3	97	50	0	0	50	1.00
34405460--34405487	3	9.3	3	100	0	56	67	0	0	32	0.91
34407711--34407753	22	2.0	22	90	0	68	34	0	13	51	1.42
34413829--34413963	40	3.4	38	73	12	96	30	28	20	21	1.98
34413861--34413964	37	2.7	38	76	5	93	31	26	19	22	1.97
34414833--34414905	13	6.0	12	76	13	60	52	2	0	45	1.15
34423812--34423884	29	2.4	29	84	4	83	54	12	5	27	1.59
34429010--34429381	59	6.2	59	77	11	269	26	16	16	40	1.90
34429010--34429391	60	6.4	59	76	11	296	26	16	17	40	1.90
34431292--34431341	26	2.0	25	84	4	64	34	2	0	64	1.05
34432071--34432570	59	8.7	55	70	17	186	38	15	18	28	1.91
34432071--34432292	58	3.8	57	73	12	180	38	14	18	28	1.90
34432092--34432588	117	4.3	116	77	11	445	39	15	17	27	1.90
34432213--34432409	105	1.9	105	82	4	254	43	13	15	27	1.84
34432314--34432617	59	5.1	58	78	8	276	37	16	18	27	1.92
34432314--34432617	60	5.1	57	78	9	290	37	16	18	27	1.92
34432447--34432668	60	3.8	56	77	7	153	32	16	21	29	1.95
34433384--34433871	239	2.0	239	98	0	949	42	4	7	45	1.51
34441048--34441087	15	2.6	15	81	18	55	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34447698--34447735	20	1.9	19	89	5	58	39	0	5	55	1.23
34469619--34469644	2	13.0	2	100	0	52	50	0	0	50	1.00
34469763--34469873	55	2.0	55	94	0	195	41	13	23	21	1.89
34478616--34478669	15	3.3	15	74	18	54	44	0	1	53	1.11
34478702--34478738	16	2.3	16	86	13	58	40	0	0	59	0.97
34480166--34480224	26	2.3	25	83	11	84	47	0	5	47	1.24
34480240--34480312	17	4.2	17	84	6	85	43	1	2	52	1.24
34480240--34480312	6	12.7	6	72	13	64	43	1	2	52	1.24
34481030--34481083	13	4.2	13	80	4	56	59	0	1	38	1.08
34482260--34482581	59	5.5	58	80	7	303	36	27	2	33	1.71
34482322--34482640	29	10.9	29	78	11	237	37	27	2	32	1.70
34482296--34482639	59	5.9	57	79	7	198	36	27	2	32	1.72
34482257--34482644	30	13.3	28	75	12	239	36	28	3	32	1.73
34482608--34482691	41	2.0	41	95	0	150	27	36	8	27	1.85
34489746--34489804	3	19.0	3	82	3	64	64	0	0	35	0.94
34493634--34493684	26	1.9	27	84	4	68	33	1	21	43	1.64
34493861--34493917	30	1.9	30	82	7	71	49	0	5	45	1.24
34498451--34498501	22	2.3	22	100	0	102	15	5	13	64	1.46
34501550--34501602	16	3.4	16	73	21	58	39	1	0	58	1.09
34504169--34504233	33	1.9	33	90	3	103	10	7	10	70	1.33
34515826--34515854	3	9.7	3	100	0	58	68	0	31	0	0.89
34522064--34522128	33	2.0	33	96	0	121	35	13	16	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34522665--34522716	15	3.5	14	72	12	50	34	1	0	63	1.06
34524657--34524683	3	9.0	3	100	0	54	33	33	0	33	1.58
34527978--34528022	21	2.0	22	83	16	56	48	11	2	37	1.51
34531445--34531475	16	1.9	16	93	0	53	35	3	22	38	1.71
34541638--34541748	55	2.0	55	94	0	195	30	18	12	37	1.88
34552295--34552347	20	2.8	20	88	5	83	43	0	0	56	0.99
34553514--34553547	17	2.1	16	88	5	50	50	2	0	47	1.16
34553927--34553970	16	2.6	17	75	7	54	43	0	0	56	0.99
34554650--34554838	102	2.0	95	83	12	244	35	8	10	44	1.70
34559063--34559123	31	2.0	30	83	3	77	39	9	6	44	1.64
34559068--34559130	31	2.0	31	81	6	74	39	12	7	39	1.73
34562185--34562328	57	2.5	57	86	2	180	55	6	12	25	1.61
34562420--34562728	34	8.9	33	69	21	109	64	8	0	27	1.21
34562420--34562525	54	2.0	53	96	1	194	66	7	0	26	1.18
34562508--34562733	50	4.7	48	74	18	222	64	7	0	27	1.21
34562420--34562683	92	3.0	87	77	15	265	65	7	0	27	1.18
34562508--34562733	92	2.4	97	81	13	265	64	7	0	27	1.21
34562565--34562678	28	4.1	28	74	15	96	68	4	0	27	1.08
34562570--34562678	11	10.6	10	70	20	57	67	4	0	27	1.10
34562493--34562682	29	6.2	30	69	20	99	65	6	0	27	1.18
34562711--34562776	31	2.1	33	83	11	84	68	12	0	19	1.21
34562998--34563065	21	3.3	21	66	12	59	20	7	10	61	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34569517--34569549	16	2.1	15	94	5	57	30	3	0	66	1.06
34577750--34577831	42	2.0	42	80	4	94	42	1	2	53	1.21
34580916--34580948	16	1.9	18	88	11	52	72	0	24	3	0.98
34584478--34584534	29	2.0	29	89	0	87	31	17	3	47	1.65
34589099--34589160	25	2.6	23	80	16	65	40	1	1	56	1.19
34590446--34590481	18	1.9	19	88	5	56	47	0	8	44	1.33
34593388--34593413	3	8.7	3	100	0	52	0	30	34	34	1.58
34594253--34594286	17	1.9	18	88	5	52	44	23	5	26	1.76
34598187--34598227	15	2.7	15	80	3	55	53	0	0	46	1.00
34601510--34601663	31	5.2	31	70	10	81	40	12	3	44	1.58
34608559--34608618	30	2.0	30	100	0	120	43	10	6	40	1.64
34609817--34609846	15	2.0	15	100	0	60	40	26	20	13	1.89
34610362--34610472	23	4.8	23	82	0	141	41	22	19	16	1.90
34623349--34625011	549	3.0	549	89	2	2466	20	26	14	38	1.91
34629152--34629190	18	2.2	18	85	0	51	76	0	10	12	1.01
34630473--34630957	117	4.2	117	83	1	553	20	26	15	37	1.93
34630484--34631042	233	2.4	235	78	7	566	19	27	15	37	1.92
34633088--34633282	96	2.0	96	97	0	372	44	11	11	32	1.77
34642631--34642700	34	2.1	34	97	0	131	40	10	15	34	1.81
34643970--34644027	29	2.0	28	86	10	80	50	6	0	43	1.29
34645106--34645160	26	2.2	26	80	9	60	50	1	3	43	1.30
34645118--34645168	26	2.0	26	84	0	66	49	0	5	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34647811--34647837	9	3.0	9	100	0	54	33	0	0	66	0.92
34647853--34647894	21	2.0	23	86	13	63	66	4	2	26	1.23
34649597--34649646	25	2.0	26	88	4	75	34	14	12	40	1.82
34650714--34650756	15	2.8	15	85	3	50	46	4	0	48	1.22
34670367--34670407	22	1.9	22	85	5	57	31	7	0	60	1.24
34672180--34672228	25	1.9	25	83	4	62	44	4	0	51	1.20
34672372--34672437	32	2.1	32	94	0	114	45	13	12	28	1.80
34674131--34674177	12	3.8	12	75	13	51	40	2	2	55	1.24
34674126--34674178	24	2.2	25	86	3	72	39	1	1	56	1.21
34700329--34700371	20	2.1	20	86	4	59	48	2	2	46	1.27
34704630--34704695	31	2.1	31	88	0	96	51	13	1	33	1.50
34708940--34709072	55	2.4	55	94	0	230	33	8	30	27	1.86
34717467--34717500	18	1.9	17	94	5	59	29	5	0	64	1.17
34727341--34727365	6	4.2	6	100	0	50	20	0	0	80	0.72
34739641--34739937	153	2.0	151	86	2	416	33	12	11	43	1.78
34741393--34741421	14	2.0	15	93	6	51	68	0	0	31	0.89
34756821--34756887	31	2.3	27	76	14	62	41	11	8	37	1.73
34766348--34766394	24	1.9	25	86	4	69	42	27	2	27	1.67
34766608--34766632	6	4.2	6	100	0	50	68	0	0	32	0.90
34779072--34779105	8	4.2	8	92	0	59	26	0	0	73	0.83
34794151--34794220	33	2.2	32	82	7	79	31	5	10	52	1.58
34795173--34795206	3	11.3	3	100	0	68	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34826500--34826557	29	1.9	31	89	6	93	46	3	1	48	1.29
34835664--34835721	25	2.3	25	77	8	64	60	3	1	34	1.24
34849924--34849948	8	3.1	8	100	0	50	40	0	0	60	0.97
34850118--34850152	17	2.0	18	88	5	54	57	2	20	20	1.54
34860469--34860530	27	2.3	27	91	0	97	16	30	33	19	1.94
34860469--34860549	27	3.0	27	80	3	92	18	29	30	20	1.97
34860635--34860700	20	3.2	20	72	20	55	57	0	4	37	1.19
34860705--34860835	57	2.4	55	78	10	142	56	5	2	35	1.35
34860901--34860961	27	2.3	27	94	0	104	14	24	39	21	1.91
34861014--34861079	26	2.4	26	85	7	69	56	4	22	16	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144