genome.fa.s7.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  81  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18162736--18162819	30	2.8	30	81	0	105	38	23	1	36	1.63
18164798--18164848	21	2.5	21	83	3	59	33	13	15	37	1.87
18171240--18171330	29	3.2	28	80	4	112	19	17	16	46	1.85
18171304--18171349	22	2.1	22	88	4	67	15	15	13	56	1.68
18179940--18180036	42	2.3	42	81	13	110	32	1	16	49	1.53
18180158--18180193	9	4.0	9	92	0	54	25	11	13	50	1.75
18180159--18180196	18	2.1	18	95	0	67	26	10	13	50	1.73
18180507--18180583	22	3.5	22	67	22	61	38	7	0	53	1.30
18180659--18180706	20	2.5	19	83	12	55	37	4	0	58	1.18
18180744--18180899	49	3.1	49	72	12	165	46	7	1	44	1.41
18180612--18181073	245	1.9	241	83	9	600	45	8	2	43	1.48
18180407--18180828	140	3.0	139	81	7	465	43	6	2	47	1.44
18180699--18180916	101	2.2	100	87	6	316	49	6	2	41	1.42
18195623--18195680	21	2.8	21	86	5	73	39	41	6	12	1.69
18202218--18202374	60	2.6	60	85	5	194	28	20	10	40	1.85
18207571--18207703	70	1.9	67	86	4	185	42	11	12	33	1.78
18211673--18211705	16	2.1	16	88	5	50	30	3	0	66	1.06
18211854--18211885	14	2.3	15	89	10	50	75	0	0	25	0.81
18218205--18218245	6	6.8	6	88	0	55	0	19	2	78	0.87
18226996--18227041	2	23.0	2	100	0	92	50	0	0	50	1.00
18227056--18227084	11	2.6	11	100	0	58	24	0	6	68	1.13
18227052--18227084	11	2.8	12	86	13	50	30	0	6	63	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18227717--18227775	3	19.0	3	93	6	100	64	3	0	32	1.10
18230587--18230656	31	2.3	30	87	2	95	27	5	7	60	1.46
18230787--18230855	31	2.3	31	85	12	90	46	2	4	46	1.37
18231558--18231596	19	2.1	19	90	4	62	74	2	10	12	1.17
18235833--18235867	18	2.0	18	94	5	63	57	2	0	40	1.14
18235897--18235929	12	2.6	13	90	4	50	60	0	3	36	1.12
18238324--18238348	13	1.9	13	100	0	50	16	0	0	84	0.63
18239569--18239663	49	1.9	49	84	0	127	24	27	13	34	1.93
18239590--18239856	147	1.8	147	85	0	381	19	25	15	39	1.91
18239784--18239951	92	1.8	92	82	0	219	17	29	14	37	1.90
18250725--18250749	12	2.1	12	100	0	50	32	24	0	44	1.54
18257862--18257890	14	2.1	14	100	0	58	27	13	6	51	1.66
18260013--18260057	22	2.0	22	83	8	56	48	0	15	35	1.45
18261939--18261969	7	4.4	7	100	0	62	12	0	29	58	1.35
18269419--18269471	2	26.5	2	96	0	97	49	1	0	49	1.12
18273921--18274028	55	2.0	55	96	0	198	15	24	17	42	1.88
18280931--18280965	15	2.3	15	90	0	52	80	0	8	11	0.92
18283777--18283817	16	2.6	16	100	0	82	31	12	26	29	1.92
18287776--18288135	121	2.9	123	92	2	607	37	10	7	44	1.68
18297837--18297870	16	2.1	17	89	10	54	14	20	2	61	1.46
18299926--18300017	13	7.1	13	70	14	73	32	4	27	35	1.77
18299933--18299997	26	2.5	26	100	0	130	33	4	29	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18300289--18300330	14	3.1	14	82	6	50	52	0	2	45	1.13
18300288--18300332	21	2.1	21	87	0	63	51	0	2	46	1.13
18302010--18302193	72	2.6	72	94	0	316	57	15	4	22	1.57
18302624--18302693	18	3.9	18	77	7	70	42	10	8	38	1.69
18311971--18312018	24	2.0	24	88	8	71	43	14	6	35	1.71
18312006--18312056	12	4.2	12	76	0	57	49	19	5	25	1.71
18313474--18313507	12	2.9	12	91	4	52	85	0	2	11	0.71
18315832--18315894	19	3.4	19	71	20	69	58	0	25	15	1.37
18315835--18315895	18	3.3	18	70	20	63	59	0	26	14	1.36
18315818--18315905	37	2.4	37	98	0	167	57	0	27	14	1.37
18315843--18315906	21	3.3	21	68	28	68	56	0	26	17	1.41
18323788--18323858	33	2.2	33	100	0	142	35	15	21	28	1.94
18327599--18328093	171	3.0	168	83	7	576	36	18	22	23	1.95
18327842--18328125	152	1.9	152	92	0	478	35	18	22	24	1.96
18327950--18329589	201	8.1	201	92	0	2494	35	17	23	23	1.96
18327950--18329589	401	4.1	401	90	1	2492	35	17	23	23	1.96
18329903--18330027	11	11.0	11	72	12	67	37	0	5	56	1.23
18329904--18330046	17	8.3	18	79	9	140	39	0	4	54	1.27
18329904--18330046	34	4.2	34	85	4	164	39	0	4	54	1.27
18330713--18330739	3	9.0	3	100	0	54	66	0	0	33	0.92
18331039--18331075	18	2.0	19	94	5	67	64	10	13	10	1.49
18331810--18332128	59	5.4	59	75	14	232	33	26	7	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18331799--18332142	30	11.7	29	76	12	231	33	26	7	32	1.84
18332008--18332128	29	4.1	30	74	13	83	37	23	8	30	1.84
18336571--18336659	36	2.6	35	83	10	114	22	16	16	43	1.87
18339479--18339550	33	2.2	33	94	0	126	22	40	4	33	1.73
18358584--18359037	226	2.0	226	92	0	755	29	14	23	32	1.94
18362388--18362534	42	3.5	42	82	7	154	38	10	25	25	1.87
18366782--18366824	19	2.1	21	83	8	54	55	2	2	39	1.25
18368014--18368069	2	28.0	2	100	0	112	50	0	0	50	1.00
18378555--18378679	47	2.7	46	80	9	144	19	3	19	58	1.53
18378610--18378678	6	11.7	6	75	9	61	18	4	17	59	1.54
18378977--18379133	41	3.6	42	80	16	194	31	8	10	49	1.67
18379325--18379351	7	3.9	7	100	0	54	11	0	14	74	1.08
18379569--18379667	33	3.0	33	83	5	128	23	4	23	49	1.67
18381356--18381474	26	4.8	24	88	6	166	19	1	10	68	1.28
18382553--18382606	27	2.0	27	85	0	72	24	18	5	51	1.67
18391441--18391537	43	2.3	43	90	0	149	41	10	15	32	1.81
18392866--18393422	287	1.9	286	82	8	702	49	15	1	33	1.54
18393921--18393954	5	6.6	5	93	6	59	20	0	0	79	0.73
18408560--18408738	83	2.2	83	98	0	349	40	14	3	41	1.62
18409809--18409937	67	1.9	67	93	0	222	27	18	16	37	1.92
18415971--18416036	34	1.9	34	87	6	98	45	6	3	45	1.43
18417541--18417633	17	5.3	17	80	5	105	38	0	6	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18417551--18417633	35	2.4	36	78	8	59	39	0	6	54	1.25
18419253--18419326	30	2.5	29	82	4	94	37	21	1	39	1.62
18419284--18419861	59	9.8	59	85	5	724	33	28	2	35	1.71
18419264--18419626	29	12.3	30	64	23	98	33	27	2	36	1.70
18419284--18419861	235	2.5	234	85	5	763	33	28	2	35	1.71
18419723--18419816	29	3.2	27	69	21	66	34	31	2	31	1.70
18422614--18422665	21	2.5	21	81	6	61	32	26	13	26	1.94
18422706--18422750	21	2.1	21	91	0	72	37	20	15	26	1.92
18423404--18423458	28	2.0	28	92	0	92	25	27	14	32	1.95
18432627--18432665	20	2.0	20	85	5	53	71	5	2	20	1.17
18432747--18433025	29	9.6	29	79	7	208	36	1	24	37	1.66
18432749--18433026	58	4.8	58	77	11	264	36	1	24	37	1.66
18432742--18433025	87	3.2	88	81	5	315	36	1	25	36	1.66
18433922--18433950	12	2.3	13	94	5	51	20	13	0	65	1.26
18434135--18434183	12	3.6	13	81	13	55	59	2	0	38	1.09
18434125--18434167	15	2.5	17	78	21	54	55	0	2	41	1.12
18434218--18434260	22	2.0	22	86	9	61	65	2	0	32	1.06
18434880--18434964	17	5.1	17	80	5	102	55	4	1	38	1.29
18434862--18434906	23	2.0	23	100	0	90	57	0	0	42	0.98
18434863--18434964	34	3.0	34	84	7	111	55	3	0	39	1.25
18434869--18434971	40	2.6	37	79	10	98	56	3	0	38	1.24
18435479--18436287	39	20.7	39	69	5	373	26	20	30	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18435481--18435892	78	5.3	77	83	1	473	24	20	31	23	1.98
18435439--18435936	78	6.4	77	81	1	457	25	20	30	23	1.98
18435439--18435936	156	3.2	155	82	3	572	25	20	30	23	1.98
18435910--18436289	78	4.9	78	83	1	449	27	20	30	21	1.98
18435909--18436290	156	2.4	156	84	2	507	27	20	30	21	1.98
18448201--18448515	29	10.8	29	77	13	281	36	4	23	35	1.76
18448201--18448513	58	5.4	59	80	9	313	36	4	23	35	1.76
18450369--18450403	16	2.2	16	89	0	52	62	2	0	34	1.10
18457977--18458059	42	2.0	42	90	9	134	43	1	6	49	1.35
18457908--18458176	50	5.4	50	75	11	239	46	4	5	43	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144