genome.fa.s7.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  27  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6685749--6686446	42	16.5	41	83	8	785	20	18	25	35	1.96
6685749--6686446	126	5.5	126	84	5	877	20	18	25	35	1.96
6686779--6686816	6	6.5	6	85	14	53	0	18	0	81	0.69
6686783--6686816	11	3.1	11	100	0	68	0	17	0	82	0.67
6686774--6686816	22	2.0	22	90	0	68	2	16	0	81	0.79
6686837--6686867	3	10.3	3	100	0	62	35	0	0	64	0.94
6687387--6687596	52	4.2	51	65	23	129	43	2	8	45	1.48
6687519--6687571	20	2.6	20	78	3	61	41	1	3	52	1.30
6687385--6687582	51	3.9	51	64	14	115	43	2	8	45	1.47
6687385--6687655	150	1.8	150	85	8	390	42	2	10	44	1.52
6687532--6687736	99	2.1	98	85	4	277	42	3	10	42	1.56
6687541--6687722	100	1.8	100	89	2	285	37	3	10	47	1.57
6687385--6687721	152	2.2	149	81	8	337	41	2	10	45	1.52
6687567--6687802	99	2.4	98	80	7	237	42	2	11	42	1.56
6692235--6692265	4	7.8	4	92	0	53	22	29	0	48	1.51
6700444--6700469	9	2.9	9	100	0	52	88	0	0	11	0.52
6700876--6701481	42	14.5	42	86	3	772	19	19	24	35	1.96
6701809--6701840	16	1.9	17	93	6	57	3	9	0	87	0.64
6702432--6702966	148	3.6	149	84	6	629	42	3	9	44	1.52
6702432--6702997	152	3.8	148	80	7	608	42	3	9	45	1.51
6702962--6703018	29	1.9	30	82	3	71	43	0	5	50	1.24
6712469--6712509	15	2.7	15	96	0	73	14	12	39	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6712696--6712768	17	4.2	17	75	1	65	19	20	12	47	1.81
6712682--6712751	34	2.1	34	86	0	95	20	20	11	48	1.79
6714045--6714095	26	2.0	26	88	0	75	27	25	23	23	2.00
6740746--6740939	24	8.1	24	82	5	241	28	24	18	27	1.98
6740746--6740939	72	2.7	72	89	0	298	28	24	18	27	1.98
6746128--6746312	51	3.6	51	88	1	255	31	14	24	29	1.95
6746123--6746358	102	2.3	103	83	6	291	30	16	25	28	1.96
6751725--6751776	9	5.6	9	86	8	68	76	5	13	3	1.10
6752752--6752854	37	2.7	38	72	6	91	23	19	26	31	1.98
6755013--6755069	24	2.4	24	81	0	69	19	21	15	43	1.87
6765469--6765545	32	2.4	33	77	4	84	62	6	5	25	1.41
6766317--6766355	21	2.0	20	90	10	62	33	15	0	51	1.44
6776194--6776270	32	2.4	33	80	4	93	63	6	3	25	1.36
6778683--6778759	32	2.4	33	80	4	93	63	6	3	25	1.36
6787099--6787154	27	2.0	28	89	6	87	53	7	0	39	1.28
6787108--6787159	24	2.3	23	78	18	56	53	5	0	40	1.25
6787108--6787205	42	2.4	41	78	1	106	51	4	3	41	1.36
6788485--6788530	19	2.3	21	82	17	62	28	0	4	67	1.10
6788484--6788529	18	2.4	18	85	10	56	28	0	4	67	1.10
6788917--6788967	21	2.4	23	75	18	56	37	0	5	56	1.23
6796036--6796129	6	15.7	6	98	0	143	27	50	0	22	1.50
6799601--6799951	104	3.4	103	78	2	353	37	15	17	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6803906--6803966	25	2.6	24	80	12	65	57	0	32	9	1.32
6808861--6808921	25	2.6	24	80	12	65	57	0	32	9	1.32
6811421--6811460	2	20.0	2	100	0	80	50	0	0	50	1.00
6815877--6815918	3	14.0	3	94	0	75	33	2	0	64	1.07
6822246--6822304	24	2.5	24	81	10	59	37	5	0	57	1.21
6822278--6822432	57	2.7	59	82	10	187	45	2	0	51	1.14
6822378--6822448	26	2.8	26	79	10	67	49	2	1	46	1.25
6822269--6822438	58	2.9	57	81	9	193	45	2	0	52	1.13
6822594--6822633	16	2.5	16	83	0	53	27	27	5	40	1.77
6826806--6826852	22	2.2	22	84	3	60	42	17	2	38	1.61
6827294--6827389	50	1.9	51	86	2	140	36	16	19	27	1.93
6827429--6827864	216	2.0	216	88	2	644	33	20	14	31	1.93
6830584--6830626	18	2.4	17	88	7	59	34	11	11	41	1.78
6837510--6837667	35	4.6	35	74	13	132	46	5	1	45	1.37
6837611--6837679	12	5.7	12	74	20	54	50	2	1	44	1.25
6850231--6850359	51	2.6	51	80	11	142	54	4	1	39	1.31
6858382--6858520	59	2.4	59	79	7	140	36	4	24	34	1.75
6858502--6858772	30	9.1	30	80	10	272	39	2	18	40	1.63
6858498--6858780	90	3.1	88	80	8	320	39	2	18	39	1.63
6859878--6859937	20	2.7	22	75	19	63	45	3	0	51	1.17
6860582--6860687	6	19.0	6	66	14	66	52	3	1	41	1.30
6860590--6860666	17	4.6	16	85	7	82	55	2	2	38	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6860954--6861181	92	2.5	92	94	2	404	31	16	17	35	1.92
6873113--6873456	30	11.7	28	75	13	164	37	2	21	38	1.65
6873191--6873482	59	4.9	60	84	4	351	38	2	19	40	1.63
6873191--6873441	89	2.8	89	86	4	353	39	1	17	41	1.61
6875282--6875394	6	20.2	6	68	13	80	51	3	1	43	1.29
6875282--6875394	11	10.6	11	70	15	69	51	3	1	43	1.29
6875303--6875359	23	2.5	23	91	0	87	52	1	3	42	1.28
6875322--6875394	28	2.6	28	82	2	92	54	2	0	42	1.14
6875322--6875365	23	1.9	23	90	0	70	61	0	0	38	0.96
6879418--6879690	135	2.0	135	100	0	546	35	11	21	31	1.89
6884568--6884604	6	6.2	6	90	0	56	27	2	48	21	1.63
6885167--6885206	20	2.0	20	85	4	55	57	5	2	35	1.34
6885214--6885246	18	1.9	17	88	11	50	54	6	9	30	1.56
6890719--6892066	676	2.0	676	96	0	2464	34	25	15	25	1.95
6893179--6893239	22	2.8	22	85	7	72	72	3	11	13	1.24
6893205--6893234	15	1.9	16	93	6	53	70	3	13	13	1.30
6895569--6895608	21	1.9	21	89	0	62	27	17	12	42	1.85
6896426--6896486	22	2.8	22	80	7	63	72	3	9	14	1.24
6897286--6897328	19	2.3	19	84	8	52	58	4	0	37	1.19
6901115--6901308	97	2.0	97	84	4	257	37	13	18	29	1.90
6901521--6901591	29	2.5	29	81	6	74	29	5	28	36	1.80
6901549--6901654	29	3.6	29	77	6	115	34	4	25	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6901606--6901892	29	9.6	30	73	13	175	33	3	27	35	1.74
6901549--6901893	29	11.7	29	71	12	104	33	4	26	35	1.76
6901695--6901816	60	2.0	60	84	3	156	32	3	29	34	1.74
6902963--6903034	6	13.0	6	76	16	75	41	0	0	58	0.98
6902957--6903034	12	7.0	12	81	16	96	39	0	0	60	0.97
6902957--6903034	22	3.5	22	91	3	113	39	0	0	60	0.97
6902951--6903032	28	2.8	28	75	22	87	36	0	0	63	0.95
6902973--6903034	28	2.2	28	88	0	97	41	0	0	58	0.98
6903727--6903802	40	1.9	40	84	10	102	52	7	1	38	1.39
6903722--6903813	23	3.8	23	67	19	71	53	6	1	39	1.34
6903745--6903816	17	4.2	17	76	0	81	51	5	1	41	1.34
6904832--6904894	27	2.3	27	100	0	126	46	6	12	34	1.68
6907347--6907395	3	16.3	3	100	0	98	67	0	0	32	0.91
6913851--6913892	19	2.2	19	87	8	59	71	2	0	26	0.98
6918384--6918425	22	1.9	22	90	0	66	26	2	21	50	1.61
6918775--6918846	36	2.0	36	88	0	108	9	20	27	41	1.84
6918781--6918855	36	2.1	36	85	5	98	10	22	26	40	1.87
6919050--6919391	173	2.0	173	99	0	675	28	6	29	36	1.81
6919953--6920021	17	4.2	17	72	5	61	39	4	4	52	1.41
6920018--6920055	19	2.1	19	90	5	60	60	13	5	21	1.52
6920096--6920146	26	2.0	26	88	0	75	47	29	15	7	1.74
6921855--6922265	30	13.9	30	74	12	217	35	24	4	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6922017--6922302	58	4.9	60	75	6	178	34	25	5	33	1.81
6921925--6922328	29	13.8	29	72	12	134	34	26	4	34	1.78
6922222--6922342	29	4.2	28	76	7	109	32	28	9	28	1.89
6929277--6929356	39	2.1	39	97	0	151	36	17	26	20	1.94
6933142--6933172	16	1.9	16	100	0	62	35	25	12	25	1.92
6934372--6935659	209	6.2	209	85	4	1626	36	18	22	22	1.95
6934372--6935549	407	2.9	408	87	3	1569	36	18	22	22	1.95
6935963--6936033	17	4.2	17	81	0	88	39	2	4	53	1.35
6935957--6936023	34	2.0	34	93	0	116	32	2	7	56	1.42
6936078--6936129	26	2.0	26	88	7	79	46	34	13	5	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144