genome.fa.s7.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  61  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12876973--12877009	2	18.5	2	100	0	74	48	0	0	51	1.00
12879512--12879568	25	2.4	25	85	11	75	24	0	5	70	1.08
12879527--12879568	6	6.8	6	79	15	50	21	0	2	76	0.90
12879531--12879565	17	1.9	19	88	11	56	22	0	2	74	0.95
12887217--12887402	51	3.6	51	89	0	255	31	22	12	33	1.91
12891859--12891902	15	2.8	16	82	6	63	47	34	11	6	1.66
12891845--12891901	15	3.7	15	77	11	53	47	33	10	8	1.69
12891932--12892013	7	11.9	7	74	7	60	21	23	23	31	1.98
12891943--12891993	21	2.4	21	90	6	77	27	23	19	29	1.98
12893207--12893239	6	5.3	6	96	3	57	36	0	0	63	0.95
12896976--12897095	58	2.1	58	90	3	188	47	20	0	32	1.50
12897312--12897354	21	2.0	21	86	0	59	6	2	16	74	1.14
12902210--12902314	20	5.3	19	70	13	70	32	5	10	51	1.60
12902628--12902667	18	2.2	18	90	0	62	50	7	15	27	1.70
12910246--12910305	27	2.2	27	87	0	84	23	15	8	53	1.68
12915001--12915035	10	3.7	10	85	14	56	0	20	0	80	0.72
12915563--12915607	10	4.5	10	91	0	72	15	28	33	22	1.95
12915620--12915754	20	6.8	20	77	5	96	20	20	20	40	1.92
12915673--12915751	7	11.7	7	70	8	56	18	22	22	35	1.96
12915608--12915754	13	11.1	13	72	12	102	20	20	19	39	1.93
12915653--12915739	27	3.2	28	73	15	85	19	19	21	39	1.93
12915606--12915754	40	3.7	39	77	9	140	20	20	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12915667--12915751	27	3.2	25	81	9	80	18	22	22	36	1.95
12916764--12916793	3	10.3	3	92	7	53	30	0	0	70	0.88
12922290--12922319	3	10.3	3	92	7	53	30	0	0	70	0.88
12923514--12923553	21	1.9	21	89	0	62	17	12	30	40	1.86
12926004--12926029	6	4.3	6	100	0	52	53	0	0	46	1.00
12932499--12932563	20	3.1	20	76	19	62	41	0	4	53	1.21
12936756--12936783	12	2.3	12	100	0	56	46	7	10	35	1.66
12946100--12946173	21	3.5	21	78	14	73	33	10	25	29	1.90
12948731--12948797	18	3.7	17	78	9	62	62	2	2	31	1.25
12949292--12949336	24	1.9	23	86	4	63	42	15	11	31	1.82
12951497--12951535	18	2.2	17	90	4	60	51	0	0	48	1.00
12951694--12951774	23	3.3	23	74	17	67	46	0	2	50	1.14
12952302--12952414	55	2.1	55	100	0	226	48	16	15	18	1.81
12959605--12959669	29	2.2	29	80	0	76	24	27	27	20	1.99
12969153--12969177	12	2.1	12	100	0	50	24	0	24	52	1.48
12970033--12970064	3	10.7	3	100	0	64	34	31	0	34	1.58
12970063--12970095	3	11.0	3	100	0	66	33	0	0	66	0.92
12970531--12970975	144	3.1	141	85	4	590	44	3	10	41	1.56
12981418--12981458	21	2.0	22	85	9	59	60	0	26	12	1.31
12983433--12983559	43	3.0	43	75	9	125	31	8	20	39	1.83
12983748--12983803	27	2.0	28	82	3	69	21	16	16	46	1.84
12989846--12989884	20	1.9	21	89	5	62	69	0	28	2	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12989855--12990945	251	4.4	249	81	7	1166	42	9	17	30	1.80
12990563--12992803	611	3.7	614	84	6	2806	40	11	18	30	1.85
12992405--12993281	254	3.5	251	82	5	1064	40	10	19	29	1.84
12993204--12993240	19	2.0	18	89	5	56	62	0	29	8	1.24
12993715--12993767	27	2.0	27	82	10	65	5	37	1	54	1.35
12994594--12994656	24	2.6	24	87	0	90	50	9	14	25	1.72
12994596--12994718	62	2.0	61	93	4	212	52	8	13	26	1.69
12994672--12994718	24	1.9	25	91	4	78	57	6	12	23	1.58
12996620--12996676	24	2.4	24	84	0	69	49	8	15	26	1.74
12998150--12998790	253	2.6	249	82	6	809	39	11	17	31	1.85
12999120--12999169	26	2.0	25	84	11	66	8	12	2	78	1.05
13001149--13001620	230	2.0	232	84	3	619	39	11	14	33	1.83
13001909--13002558	251	2.6	250	85	3	867	40	11	18	30	1.85
13000854--13003405	858	3.0	854	87	4	3592	39	11	17	31	1.85
13002763--13003666	241	3.6	251	83	5	1104	41	10	16	31	1.83
13003596--13003643	22	2.2	22	85	7	62	43	4	27	25	1.72
13009441--13009472	16	1.9	17	93	6	57	9	15	0	75	1.05
13010619--13010676	21	2.8	21	73	5	55	68	1	24	5	1.19
13011977--13012009	16	2.0	17	88	5	50	66	15	15	3	1.37
13015686--13015727	21	2.0	22	95	4	77	9	11	0	78	0.96
13016875--13016931	20	2.8	19	74	10	51	73	1	21	3	1.07
13018544--13018584	12	3.3	12	84	15	57	9	14	0	75	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13028655--13028781	43	3.0	43	75	2	130	33	8	18	39	1.82
13028970--13029025	27	2.0	28	82	3	69	19	19	17	42	1.89
13030408--13030456	25	2.0	25	88	8	73	10	10	2	77	1.07
13032050--13032308	134	1.9	134	88	4	389	38	14	8	38	1.76
13032590--13033060	249	1.9	249	85	1	658	42	9	16	31	1.81
13033044--13033086	2	21.5	2	100	0	86	51	0	0	48	1.00
13033469--13033531	34	1.9	34	83	6	85	50	3	11	34	1.54
13034040--13034068	14	2.1	14	100	0	58	44	6	27	20	1.77
13035804--13035852	22	2.2	22	81	0	62	42	2	28	26	1.66
13036086--13037003	251	3.6	253	86	3	1227	41	10	17	30	1.83
13039395--13040039	255	2.5	252	83	2	810	40	9	17	32	1.82
13040379--13040431	27	1.9	28	88	3	81	9	13	1	75	1.12
13044601--13044650	20	2.4	22	74	16	52	26	2	12	60	1.43
13050857--13050886	16	1.9	16	93	6	53	20	3	0	76	0.92
13052397--13052427	16	1.9	16	93	0	53	35	3	6	54	1.42
13052605--13052662	23	2.5	23	85	0	71	31	22	20	25	1.98
13052827--13052851	7	3.6	7	100	0	50	16	52	0	32	1.44
13056598--13057504	251	3.6	250	87	4	1177	39	11	17	31	1.85
13058235--13058330	41	2.3	41	94	0	165	37	28	5	29	1.79
13063159--13064037	249	3.5	248	87	3	1185	41	10	17	30	1.84
13063993--13064048	22	2.5	21	81	16	60	44	3	26	25	1.70
13069839--13069870	16	1.9	17	93	6	57	9	18	0	71	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13079868--13079973	20	5.4	20	66	19	62	48	0	1	50	1.12
13079877--13079976	29	3.4	29	86	2	148	50	0	1	49	1.07
13081284--13081322	17	2.3	17	100	0	78	64	23	0	12	1.28
13081284--13081331	17	2.8	17	93	0	69	64	20	4	10	1.41
13082839--13082863	13	1.9	13	100	0	50	84	0	16	0	0.63
13085685--13085723	19	2.0	20	85	5	53	15	7	0	76	0.99
13092267--13092519	29	8.7	29	76	8	192	37	25	5	31	1.79
13092263--13092519	59	4.4	59	81	5	252	37	25	5	31	1.79
13092307--13092708	58	6.9	55	74	9	209	34	26	6	32	1.82
13092623--13092734	58	1.9	57	82	8	138	33	28	4	33	1.77
13092629--13092746	28	4.1	28	67	12	78	36	27	5	30	1.81
13097638--13097746	43	2.5	43	83	0	128	36	12	18	32	1.89
13098452--13098490	16	2.4	16	88	12	62	7	2	35	53	1.43
13100942--13101051	4	26.2	4	69	23	50	69	4	5	20	1.27
13101018--13101162	78	1.9	77	82	12	185	68	8	4	19	1.32
13101180--13101211	10	3.2	10	90	0	55	31	25	21	21	1.98
13101896--13102522	45	13.8	45	80	3	573	25	16	26	31	1.96
13102643--13103074	145	3.0	147	77	4	381	19	24	16	40	1.91
13102608--13103066	98	4.7	98	76	5	378	19	23	15	40	1.90
13102580--13103072	49	10.1	49	75	2	310	19	23	16	40	1.91
13108062--13108103	6	6.8	6	84	10	50	23	0	0	76	0.79
13110347--13110417	26	2.7	26	80	4	72	61	9	8	19	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13111928--13111958	16	2.0	15	93	6	53	77	0	16	6	0.97
13115563--13115755	52	3.7	52	92	0	305	23	14	26	35	1.93
13121970--13122821	253	3.4	250	81	6	1012	41	10	16	31	1.83
13121973--13122944	488	2.0	493	86	7	1384	41	9	17	31	1.82
13122820--13124961	612	3.5	612	85	6	2850	39	11	18	31	1.85
13124567--13125492	255	3.6	257	85	7	1208	40	10	17	31	1.84
13131133--13132172	244	4.3	244	93	1	1588	40	9	18	31	1.83
13130818--13132172	488	2.8	484	85	5	1761	39	10	17	32	1.84
13132875--13132970	41	2.3	41	94	0	165	36	27	6	30	1.81
13132960--13132998	17	2.3	17	86	0	51	46	23	12	17	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144