genome.fa.s7.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  17  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4247824--4247865	17	2.4	17	88	4	57	50	2	26	21	1.61
4260343--4260381	6	6.5	6	87	0	51	23	30	0	46	1.53
4287775--4287852	31	2.6	30	84	11	97	35	10	8	44	1.70
4289408--4289479	25	2.9	25	76	14	67	52	4	4	38	1.40
4292434--4292485	27	2.0	27	84	3	70	26	5	5	61	1.42
4292682--4292706	8	3.1	8	100	0	50	36	0	0	64	0.94
4296856--4296889	17	2.0	17	88	0	50	0	35	0	64	0.94
4303941--4303976	18	2.0	18	89	10	56	0	36	0	63	0.94
4312538--4312567	7	4.3	7	100	0	60	86	0	0	13	0.57
4314605--4314638	15	2.2	16	89	5	52	67	0	11	20	1.21
4323430--4323479	23	2.2	23	85	0	64	38	20	20	22	1.94
4335978--4336046	33	2.1	33	91	5	113	24	14	34	26	1.94
4340193--4340232	20	2.0	21	90	5	64	47	2	10	40	1.50
4347528--4347592	6	10.8	6	98	0	112	36	0	12	50	1.40
4353540--4353689	59	2.6	58	84	6	178	25	14	12	48	1.78
4353924--4354001	31	2.6	30	85	2	93	47	12	12	26	1.78
4355728--4355780	23	2.3	24	75	24	60	52	5	0	41	1.25
4355914--4355952	20	2.0	20	84	0	51	53	10	5	30	1.56
4363325--4363359	2	17.5	2	87	0	52	45	2	2	48	1.32
4368423--4368485	28	2.2	30	81	13	71	20	17	9	52	1.72
4369505--4369557	27	2.1	25	89	10	81	49	7	11	32	1.67
4371733--4371757	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4374600--4374651	6	9.0	6	77	14	56	46	3	0	50	1.20
4374601--4374642	23	1.9	21	90	9	66	42	4	0	52	1.22
4374590--4374643	11	4.9	11	77	8	56	42	3	1	51	1.30
4374699--4374776	34	2.3	34	100	0	156	29	26	23	20	1.99
4376535--4377195	58	11.4	58	88	1	914	32	29	3	35	1.74
4376535--4377195	174	3.8	174	89	2	1006	32	29	3	35	1.74
4376562--4377119	30	19.2	29	67	17	203	32	28	3	35	1.74
4389196--4389443	31	7.4	31	70	19	169	34	18	20	26	1.96
4389151--4389846	68	9.6	74	91	4	784	33	18	19	29	1.95
4390145--4390233	6	15.0	6	76	18	89	44	3	0	51	1.18
4390145--4390233	17	5.4	16	81	14	101	44	3	0	51	1.18
4390162--4390212	11	4.8	11	76	9	52	41	5	0	52	1.25
4390145--4390230	37	2.3	38	84	10	113	43	3	0	53	1.18
4392070--4392184	29	4.0	29	78	9	119	36	29	0	33	1.58
4392075--4392711	30	21.9	28	67	22	167	33	28	2	35	1.73
4392139--4392735	58	10.3	58	88	2	844	32	28	3	35	1.74
4392083--4392777	58	12.0	58	84	5	723	32	29	3	34	1.75
4396695--4396733	19	2.1	19	85	9	53	53	0	0	46	1.00
4400665--4400701	17	2.2	17	100	0	74	29	16	16	37	1.90
4401797--4401841	23	2.0	23	86	8	65	55	4	0	40	1.20
4404866--4404916	21	2.5	20	73	20	59	37	3	1	56	1.29
4408403--4408450	14	3.4	14	82	0	60	8	0	41	50	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4408390--4408456	28	2.4	28	77	5	73	11	1	40	46	1.50
4409068--4409108	2	20.5	2	100	0	82	51	0	0	48	1.00
4409085--4409409	151	2.1	152	89	4	521	33	18	11	36	1.87
4414318--4414348	16	1.9	16	93	0	53	29	6	22	41	1.78
4414432--4414631	76	2.6	75	79	11	187	28	21	25	25	1.99
4414654--4414697	17	2.6	17	75	10	54	31	2	22	43	1.66
4414654--4414747	34	2.8	34	79	6	100	30	8	19	41	1.81
4414698--4414730	17	1.9	17	93	0	57	30	12	18	39	1.87
4415225--4415251	7	3.9	7	100	0	54	29	0	29	40	1.57
4416567--4416605	17	2.3	17	95	0	69	41	5	7	46	1.55
4426939--4427030	3	29.7	3	75	16	57	27	2	0	70	0.98
4426939--4427032	22	4.3	22	72	20	90	26	2	0	71	0.97
4426943--4427031	11	8.3	11	75	22	75	26	2	0	70	0.99
4426961--4427021	4	16.2	4	74	19	60	24	3	0	72	1.00
4426943--4427030	25	3.7	24	74	22	87	27	2	0	70	0.99
4429730--4429781	21	2.5	20	84	9	61	19	7	1	71	1.20
4429744--4429789	21	2.2	21	92	0	74	19	6	2	71	1.18
4431746--4431771	10	2.6	10	100	0	52	50	7	0	42	1.31
4432160--4432200	20	2.0	21	90	4	66	41	2	36	19	1.65
4432537--4432769	30	7.8	30	79	7	188	38	19	2	39	1.66
4432562--4432740	90	2.0	90	84	4	236	36	19	2	41	1.66
4432537--4432721	60	3.1	60	86	2	246	39	17	2	41	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4432567--4432769	90	2.3	90	80	5	232	37	21	2	38	1.69
4432981--4433038	7	8.3	7	84	5	64	79	0	18	1	0.82
4432955--4433038	6	14.2	6	77	14	61	79	0	17	2	0.83
4433972--4434439	50	9.5	50	76	7	348	34	15	30	19	1.93
4433972--4434437	99	4.7	99	76	6	309	34	15	30	19	1.93
4434632--4434909	82	3.4	82	86	5	348	31	17	18	32	1.94
4434629--4434909	41	6.8	40	86	5	314	32	17	18	32	1.94
4435014--4435149	48	2.8	48	90	0	209	36	13	24	25	1.92
4435059--4435501	208	2.1	207	87	3	658	36	17	22	23	1.95
4435318--4435661	159	2.2	160	88	0	501	37	18	20	23	1.94
4435477--4435925	209	2.2	208	88	2	659	37	16	22	24	1.94
4435761--4435918	85	1.9	85	84	0	217	32	13	26	27	1.93
4436812--4436917	2	53.0	2	75	7	81	45	5	5	43	1.51
4437645--4437766	30	4.1	30	84	8	133	42	16	2	38	1.61
4437645--4437785	59	2.4	59	81	2	167	40	18	2	38	1.65
4437645--4437780	30	4.6	30	81	11	115	39	18	2	38	1.66
4438951--4439038	7	12.9	7	93	4	153	0	44	0	55	0.99
4438925--4439038	48	2.4	48	86	7	167	0	47	0	51	1.06
4441316--4441359	22	2.0	22	90	0	70	31	18	13	36	1.90
4441725--4441786	31	2.0	31	93	0	106	24	17	9	48	1.77
4442085--4442315	40	5.8	40	85	0	309	33	29	20	16	1.95
4442073--4442315	80	3.0	80	87	1	342	34	28	20	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4443499--4443529	14	2.1	15	94	5	55	77	0	6	16	0.97
4459336--4459414	11	7.4	11	74	14	60	25	3	2	68	1.19
4459336--4459377	18	2.3	19	87	4	59	26	2	0	71	0.98
4459696--4459787	29	3.1	30	77	11	91	27	2	6	64	1.30
4459707--4459747	21	2.0	20	85	4	55	29	2	4	63	1.28
4460790--4460903	46	2.5	45	80	12	142	39	24	25	10	1.87
4460766--4460903	23	5.9	22	80	10	127	39	23	26	10	1.88
4463990--4464038	22	2.2	22	82	7	64	67	0	6	26	1.14
4463998--4464090	26	3.2	28	71	18	75	65	4	4	25	1.29
4464593--4464642	20	2.6	19	75	6	55	42	2	4	52	1.31
4464609--4464673	27	2.4	27	84	5	78	47	3	3	46	1.33
4465033--4465062	14	2.1	14	93	0	51	50	0	3	46	1.18
4465414--4465504	31	3.0	31	77	4	78	48	7	5	38	1.55
4465923--4466011	28	3.0	29	76	17	78	35	1	1	61	1.11
4465942--4466001	27	2.2	27	80	13	70	35	0	1	63	1.05
4469178--4469203	3	8.7	3	100	0	52	34	65	0	0	0.93
4471018--4471234	74	2.9	74	88	1	317	35	14	17	33	1.90
4474555--4474602	22	2.1	23	81	11	55	58	2	0	39	1.10
4474724--4474800	3	26.0	3	92	2	129	31	0	1	67	0.99
4475098--4475130	10	3.7	9	88	11	50	72	0	0	27	0.85
4475912--4475975	20	3.3	19	77	14	67	25	3	9	62	1.40
4475920--4475975	19	2.9	19	77	15	60	26	3	5	64	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4475990--4476032	18	2.5	17	82	14	52	41	0	6	51	1.29
4481997--4482076	40	2.0	40	92	0	133	38	15	16	30	1.89
4487879--4488072	97	2.0	97	85	6	259	36	14	19	29	1.91
4488291--4488350	28	2.1	28	87	0	84	26	13	30	30	1.94
4488337--4488418	28	2.8	30	78	17	100	34	4	26	34	1.78
4488319--4488710	59	6.7	58	80	6	396	33	4	26	35	1.76
4488305--4488708	29	13.8	29	67	19	144	33	4	26	34	1.77
4488319--4488776	119	3.9	117	80	5	442	34	3	26	35	1.75
4488579--4488776	29	6.7	29	66	15	86	34	2	25	37	1.68
4489846--4489875	13	2.3	13	94	0	51	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144