genome.fa.s7.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  67  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14425719--14425955	62	3.8	62	87	0	348	27	18	17	35	1.94
14425767--14426502	339	2.2	341	85	2	991	29	17	15	38	1.90
14426106--14426294	62	3.0	62	81	1	218	28	17	15	38	1.91
14425490--14426294	401	2.0	401	84	2	1046	28	17	16	37	1.91
14426236--14426726	215	2.3	217	83	5	602	30	18	13	37	1.89
14424750--14426912	957	2.3	956	91	0	3477	28	17	15	38	1.90
14426665--14426974	62	5.0	61	88	2	431	27	18	15	38	1.92
14427126--14427296	62	2.8	60	85	7	236	26	16	18	38	1.92
14427461--14427516	20	2.8	20	75	0	67	46	16	3	33	1.64
14428321--14428631	62	5.0	62	90	0	469	26	18	16	38	1.91
14428321--14428631	125	2.5	124	88	2	462	26	18	16	38	1.91
14428783--14428971	62	3.0	62	87	1	263	26	18	16	38	1.92
14428442--14429186	340	2.2	340	89	1	1118	27	17	15	39	1.90
14428907--14429402	215	2.3	214	85	5	642	29	17	14	38	1.90
14428848--14429959	495	2.2	492	94	0	1909	28	18	14	38	1.90
14429843--14430145	62	4.9	62	86	1	410	27	18	15	38	1.91
14430297--14430483	62	3.0	61	86	3	250	27	16	17	38	1.91
14429957--14430635	338	2.0	340	86	4	944	28	16	15	39	1.89
14430632--14430687	20	2.8	20	75	0	67	46	16	3	33	1.64
14431491--14431801	62	5.0	62	90	0	469	26	18	16	38	1.91
14431491--14431801	125	2.5	124	88	2	462	26	18	16	38	1.91
14431954--14432141	62	3.0	62	88	1	270	26	18	17	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14431613--14432284	340	2.0	341	88	1	990	26	18	15	39	1.90
14432290--14432345	20	2.8	20	72	0	58	46	14	3	35	1.62
14433149--14433459	62	5.0	62	88	0	433	27	18	15	38	1.91
14433149--14433459	125	2.5	124	86	2	426	27	18	15	38	1.91
14433611--14433799	62	3.0	62	87	1	263	26	18	16	38	1.92
14433270--14434014	340	2.2	340	88	1	1109	27	17	15	39	1.90
14433735--14434229	215	2.3	215	84	5	642	29	17	14	38	1.90
14434663--14434972	62	5.0	61	88	2	440	27	18	15	38	1.91
14435124--14435294	62	2.8	60	85	7	236	26	16	18	38	1.92
14434784--14435462	338	2.0	340	87	3	976	28	17	15	39	1.90
14435459--14435514	20	2.8	20	75	0	67	46	16	3	33	1.64
14436315--14436625	62	5.0	62	90	0	469	26	18	16	38	1.91
14436315--14436625	125	2.5	124	88	2	462	26	18	16	38	1.91
14436777--14436965	62	3.0	62	83	1	236	25	19	16	38	1.92
14437337--14437646	62	5.0	61	88	2	431	27	18	15	38	1.92
14437798--14437968	62	2.8	60	85	7	236	26	16	18	38	1.92
14436436--14438136	340	5.0	338	71	13	1327	27	17	15	38	1.90
14438133--14438188	20	2.8	20	75	0	67	46	16	3	33	1.64
14438989--14439299	62	5.0	62	90	0	469	26	18	16	38	1.91
14438989--14439299	125	2.5	124	88	2	462	26	18	16	38	1.91
14439451--14439638	62	3.0	62	82	1	225	25	19	16	38	1.92
14440010--14440319	62	5.0	61	88	2	431	27	18	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14440471--14440641	62	2.8	60	85	7	236	26	16	18	38	1.92
14440806--14440861	20	2.8	20	75	0	67	46	16	3	33	1.64
14441662--14441972	62	5.0	62	90	0	469	26	18	16	38	1.91
14441662--14441972	125	2.5	124	88	2	462	26	18	16	38	1.91
14442124--14442311	62	3.0	62	82	1	225	25	19	16	38	1.92
14442683--14442992	62	5.0	61	88	2	431	27	18	15	38	1.92
14443144--14443314	62	2.8	60	85	7	236	26	16	18	38	1.92
14443479--14443534	20	2.8	20	75	0	67	46	16	3	33	1.64
14444335--14444645	62	5.0	62	90	0	469	26	18	16	38	1.91
14444335--14444645	125	2.5	124	88	2	462	26	18	16	38	1.91
14444797--14444984	62	3.0	62	82	1	225	25	19	16	38	1.92
14445356--14445665	62	5.0	61	88	2	431	27	18	15	38	1.92
14445817--14445987	62	2.8	60	85	7	236	26	16	18	38	1.92
14446152--14446207	20	2.8	20	75	0	67	46	16	3	33	1.64
14447008--14447318	62	5.0	62	90	0	469	26	18	16	38	1.91
14447008--14447318	125	2.5	124	88	2	462	26	18	16	38	1.91
14447470--14447657	62	3.0	62	82	1	225	25	19	16	38	1.92
14448029--14448338	62	5.0	61	88	2	431	27	18	15	38	1.92
14448490--14448660	62	2.8	60	85	7	236	26	16	18	38	1.92
14448825--14448880	20	2.8	20	75	0	67	46	16	3	33	1.64
14449681--14449991	62	5.0	62	90	0	469	26	18	16	38	1.91
14449681--14449991	125	2.5	124	88	2	462	26	18	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14450143--14450330	62	3.0	62	84	1	234	26	19	16	38	1.92
14450702--14451011	62	5.0	61	88	2	431	27	18	15	38	1.92
14451163--14451333	62	2.8	60	85	7	236	26	16	18	38	1.92
14451498--14451553	20	2.8	20	75	0	67	46	16	3	33	1.64
14452353--14452663	62	5.0	62	90	0	469	26	18	16	38	1.91
14452353--14452663	125	2.5	124	88	2	462	26	18	16	38	1.91
14452815--14453003	62	3.0	62	85	1	245	26	19	16	37	1.93
14453375--14453684	62	5.0	61	88	2	431	27	18	15	38	1.92
14453836--14454006	62	2.8	60	85	7	236	26	16	18	38	1.92
14452474--14454174	340	5.0	338	71	13	1336	28	17	15	38	1.90
14454171--14454226	20	2.8	20	75	0	67	46	16	3	33	1.64
14455027--14455337	62	5.0	62	90	0	469	26	18	16	38	1.91
14455027--14455337	125	2.5	124	88	2	462	26	18	16	38	1.91
14455489--14455676	62	3.0	62	85	1	243	26	18	16	38	1.92
14456048--14456357	62	5.0	61	88	2	431	27	18	15	38	1.92
14456509--14456679	62	2.8	60	85	7	227	26	16	18	38	1.92
14456844--14456899	20	2.8	20	75	0	67	46	16	3	33	1.64
14457730--14457784	27	2.0	27	85	0	74	23	18	20	38	1.93
14457778--14458037	62	4.2	62	87	2	378	26	18	15	38	1.91
14457757--14458036	125	2.2	124	94	1	490	26	18	16	38	1.91
14458189--14458377	62	3.0	62	86	1	263	26	17	16	39	1.91
14457848--14458592	340	2.2	340	88	1	1100	27	17	15	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14458313--14458808	215	2.3	214	85	5	642	29	17	14	38	1.89
14458758--14458994	62	3.8	62	90	0	375	27	18	16	37	1.92
14459145--14459333	62	3.0	62	78	7	168	27	18	14	39	1.90
14458529--14459333	401	2.0	401	83	3	1021	28	17	15	38	1.90
14459269--14459752	215	2.2	217	83	4	595	30	16	13	38	1.88
14457789--14460496	957	2.8	957	90	1	4278	27	17	15	39	1.90
14459704--14459952	62	4.0	62	89	1	363	26	18	16	38	1.91
14459779--14460570	340	2.3	340	98	0	1514	26	17	17	39	1.91
14460104--14460292	62	3.0	62	92	0	315	28	19	16	36	1.93
14460166--14460780	278	2.2	277	86	2	851	28	16	15	40	1.89
14460444--14460566	62	2.0	62	90	0	192	26	16	18	39	1.91
14460506--14460980	215	2.2	216	83	3	580	30	16	13	39	1.88
14460940--14461177	62	4.0	62	77	13	266	27	17	16	38	1.91
14461037--14461135	52	1.9	52	87	0	144	32	17	17	33	1.93
14460969--14461177	114	1.8	114	89	0	328	27	17	17	38	1.92
14461329--14461517	62	3.0	63	92	4	314	26	16	16	39	1.90
14461453--14461947	214	2.3	216	86	3	669	29	17	13	39	1.88
14461886--14462077	62	3.1	62	90	1	305	26	17	16	39	1.90
14463577--14463746	62	2.7	62	90	1	270	27	19	15	37	1.92
14463898--14464086	62	3.0	62	86	4	265	27	18	15	38	1.91
14464022--14464354	175	1.9	178	83	7	439	31	20	11	36	1.88
14464416--14464722	62	5.0	62	88	4	442	27	17	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14464428--14464722	121	2.4	122	89	3	434	27	17	16	38	1.92
14464199--14465062	461	1.9	458	85	3	1209	27	17	15	39	1.90
14464878--14465062	62	3.0	62	91	0	307	24	18	17	38	1.92
14464537--14465277	340	2.2	337	87	2	1040	28	17	15	39	1.89
14464998--14465493	215	2.3	216	82	4	617	30	16	13	38	1.88
14465432--14465614	62	3.0	62	95	0	312	24	17	18	39	1.92
14465581--14465646	32	2.1	32	94	0	114	16	24	22	36	1.94
14465519--14465708	94	2.0	94	91	0	308	23	20	18	37	1.94
14465613--14465772	62	2.6	62	89	1	241	26	19	18	36	1.94
14465709--14466204	216	2.3	216	82	4	590	28	16	14	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144