genome.fa.s7.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  41  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10080944--10081092	79	1.9	79	87	5	221	34	10	21	33	1.88
10081128--10081313	62	3.0	62	86	0	255	39	17	16	26	1.91
10081468--10081715	62	4.0	62	93	0	406	37	15	19	27	1.92
10081021--10081653	340	1.9	340	91	0	1034	39	13	18	28	1.89
10081654--10082148	215	2.3	216	84	5	655	38	12	17	31	1.87
10082084--10082272	62	3.0	62	83	4	240	40	16	16	26	1.90
10082424--10082607	62	3.0	61	84	3	217	38	17	16	27	1.91
10081874--10082950	338	3.2	338	88	2	1572	40	14	17	27	1.89
10082762--10083009	62	4.0	62	93	0	406	37	15	19	27	1.92
10082456--10083227	402	1.9	401	85	1	1071	39	13	17	29	1.88
10083375--10083563	62	3.0	62	83	3	247	40	16	16	26	1.89
10083714--10083897	62	3.0	61	84	3	217	38	17	16	27	1.91
10084052--10084299	62	4.0	62	92	0	397	37	15	19	27	1.92
10083746--10084514	402	1.9	401	85	1	1065	39	14	17	28	1.88
10084665--10084853	62	3.0	62	83	3	238	40	15	16	26	1.89
10085005--10085188	62	3.0	61	84	3	217	38	17	16	27	1.91
10084458--10085531	338	3.2	336	88	3	1525	40	14	17	27	1.88
10085343--10085590	62	4.0	62	93	0	406	37	15	19	27	1.92
10085037--10085808	402	1.9	401	85	1	1071	39	13	17	29	1.88
10085956--10086144	62	3.0	62	83	3	238	40	15	16	26	1.89
10086296--10086479	62	3.0	61	84	3	217	38	17	16	27	1.91
10085749--10086822	338	3.2	337	88	3	1534	40	14	17	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10086634--10086881	62	4.0	62	93	0	406	37	15	19	27	1.92
10086328--10087099	402	1.9	401	85	1	1071	39	13	17	29	1.88
10087247--10087435	62	3.0	62	83	4	231	40	16	16	26	1.89
10086084--10087959	953	2.0	954	90	1	2976	39	14	17	28	1.89
10087587--10087833	62	4.0	62	87	1	334	40	14	19	26	1.89
10087040--10087770	340	2.2	335	87	3	1049	40	14	17	27	1.88
10087587--10087833	123	2.0	123	87	0	350	40	14	19	26	1.89
10088067--10088251	62	3.0	62	90	0	280	38	17	18	25	1.93
10087145--10088782	820	2.0	819	92	1	2730	38	14	18	28	1.90
10088409--10088649	62	3.9	62	89	0	365	38	15	19	26	1.91
10088595--10089088	215	2.3	215	83	6	628	38	13	17	30	1.88
10089024--10089205	62	2.9	62	82	4	226	40	17	17	25	1.90
10088815--10089551	340	2.2	336	87	4	1097	39	14	17	28	1.89
10089432--10089549	61	2.1	53	80	14	123	40	14	19	25	1.89
10089364--10089610	62	4.0	62	89	1	343	39	14	19	26	1.90
10089364--10089610	123	2.0	123	87	0	359	39	14	19	26	1.90
10089844--10090028	62	3.0	62	90	0	280	38	17	18	25	1.93
10090186--10090426	62	3.9	62	89	0	356	38	15	19	27	1.91
10090372--10090867	215	2.3	215	83	4	606	38	13	17	30	1.88
10090819--10091239	62	6.8	62	88	1	612	39	15	18	26	1.90
10091415--10091541	62	2.0	62	89	0	191	35	18	18	26	1.95
10091692--10091940	62	4.0	62	88	1	331	37	15	17	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10092087--10092396	62	5.0	62	91	1	478	39	15	18	27	1.90
10091415--10092337	397	2.3	394	88	3	1395	38	15	17	27	1.90
10092335--10092830	215	2.3	216	85	3	651	39	13	17	30	1.88
10091728--10093291	459	3.3	459	76	12	1346	39	14	17	28	1.89
10092766--10092892	62	2.0	62	89	0	191	35	18	18	26	1.95
10093043--10093291	62	4.0	62	87	1	322	37	14	17	30	1.90
10093438--10093747	62	5.0	62	91	1	478	39	15	18	27	1.90
10093686--10094181	215	2.3	216	84	4	635	39	13	16	29	1.88
10093079--10094639	459	3.3	459	76	10	1380	39	14	17	28	1.89
10094117--10094243	62	2.0	62	87	0	182	36	18	18	27	1.94
10094394--10094639	62	4.0	62	89	1	343	38	15	17	28	1.90
10093902--10095253	676	2.0	675	92	1	2244	39	14	17	28	1.89
10094794--10094920	62	2.0	62	90	0	200	34	18	18	28	1.95
10095070--10095253	62	3.0	62	87	1	255	38	16	17	27	1.91
10095192--10095687	215	2.3	216	85	3	651	38	14	17	29	1.89
10095623--10095749	62	2.0	62	89	0	191	35	18	18	26	1.95
10095900--10096083	62	3.0	62	88	1	264	39	15	17	27	1.90
10094578--10096913	830	2.8	830	95	0	4137	39	14	17	28	1.89
10095646--10096316	337	2.0	335	83	4	807	40	14	16	28	1.88
10096022--10096517	215	2.3	216	85	3	651	39	13	17	30	1.88
10096453--10096579	62	2.0	62	89	0	191	35	18	18	26	1.95
10096730--10096978	62	4.0	62	88	1	331	37	15	17	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10097124--10097433	62	5.0	62	91	1	478	39	15	18	27	1.90
10097372--10097867	215	2.3	216	83	4	626	39	13	17	29	1.88
10097803--10097929	62	2.0	62	87	0	182	36	18	18	27	1.94
10097609--10098204	278	2.2	276	89	2	903	39	14	17	28	1.89
10098080--10098325	62	4.0	62	88	1	334	38	15	17	28	1.91
10097186--10099436	892	2.5	892	97	0	4252	39	14	17	28	1.89
10097803--10098557	399	1.9	397	83	4	957	39	14	17	28	1.90
10098264--10098759	215	2.3	216	83	4	626	39	13	17	29	1.88
10098695--10098821	62	2.0	62	89	0	191	35	18	18	27	1.94
10098972--10099217	62	4.0	62	89	1	343	38	15	17	28	1.90
10099372--10099498	62	2.0	62	89	0	191	34	17	18	29	1.94
10099649--10099894	62	4.0	62	90	1	352	39	15	17	28	1.90
10098480--10100112	677	2.4	676	94	1	2801	39	14	17	29	1.89
10099372--10100126	399	1.9	397	83	4	957	38	14	17	29	1.89
10099833--10100328	215	2.3	216	84	3	633	38	13	17	30	1.88
10100264--10100390	62	2.0	62	89	0	191	35	18	18	26	1.95
10100541--10100786	62	4.0	62	90	1	352	38	15	17	27	1.91
10100725--10101219	214	2.3	216	84	4	626	39	13	17	30	1.88
10101155--10101281	62	2.0	62	87	3	184	36	18	18	26	1.94
10099156--10101896	891	3.1	892	96	1	4949	39	14	17	29	1.89
10101432--10101677	62	4.0	62	89	1	343	38	15	17	28	1.90
10101832--10101958	62	2.0	62	89	0	191	34	17	18	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10102109--10102292	62	3.0	62	88	1	264	39	15	17	27	1.90
10101155--10102510	337	4.0	336	73	11	1276	38	14	17	28	1.89
10100940--10102292	677	2.0	676	92	1	2239	39	14	17	28	1.89
10102231--10102726	215	2.3	216	85	3	660	38	13	17	30	1.88
10101217--10102788	615	2.5	610	73	15	1760	39	14	17	28	1.89
10102662--10102788	62	2.0	62	89	0	191	35	18	18	26	1.95
10102939--10103184	62	4.0	62	91	1	361	39	15	17	27	1.90
10102662--10103417	399	1.9	397	83	4	968	39	14	17	28	1.89
10103123--10103618	215	2.3	216	84	3	642	38	13	17	30	1.88
10103554--10103680	62	2.0	62	89	0	191	35	18	18	26	1.95
10103831--10104076	62	4.0	62	90	1	352	38	15	17	27	1.91
10103554--10104308	399	1.9	397	82	4	950	39	14	17	28	1.90
10104015--10104510	215	2.3	216	84	4	626	38	13	17	30	1.88
10104446--10104572	62	2.0	62	89	0	191	35	18	18	26	1.95
10104723--10104971	62	4.0	62	91	1	358	37	15	18	29	1.91
10104921--10105395	208	2.2	208	85	3	619	39	13	17	29	1.88
10105331--10105457	62	2.0	62	89	0	191	35	18	18	26	1.95
10105608--10105853	62	4.0	62	90	1	352	38	15	17	27	1.91
10105331--10106085	399	1.9	397	82	4	950	39	15	17	28	1.90
10105792--10106287	215	2.3	216	84	3	633	38	13	17	30	1.88
10106223--10106349	62	2.0	62	89	0	191	35	18	18	27	1.94
10106500--10106745	62	4.0	62	89	1	343	38	15	17	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10106223--10106977	399	1.9	397	83	4	957	39	14	17	28	1.89
10106684--10107179	215	2.3	216	83	3	624	39	13	17	29	1.88
10107115--10107241	62	2.0	62	89	0	191	35	18	18	26	1.95
10107392--10107637	62	4.0	62	90	1	352	38	15	17	27	1.91
10107115--10107869	399	1.9	397	83	4	959	39	14	17	28	1.90
10107576--10108071	215	2.3	216	84	4	626	39	13	17	30	1.88
10108007--10108133	62	2.0	62	89	0	191	35	18	18	26	1.95
10108284--10108532	62	4.0	62	91	1	367	37	15	18	28	1.91
10108679--10108926	62	4.0	63	89	3	360	38	16	18	26	1.92
10108865--10109360	215	2.3	216	84	4	644	39	13	16	30	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144