genome.fa.s7.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  73  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15633444--15633499	24	2.3	24	93	0	94	5	19	5	69	1.28
15637255--15637414	79	2.1	77	91	6	263	35	21	14	28	1.92
15638544--15638756	80	2.7	80	82	6	236	21	17	26	33	1.96
15663423--15663474	21	2.5	21	96	0	95	40	19	17	23	1.91
15665930--15666117	102	1.8	103	90	1	306	28	27	13	30	1.94
15667838--15667958	41	3.0	40	83	7	154	31	20	22	25	1.98
15674526--15674651	41	3.1	40	82	11	148	28	18	22	30	1.97
15674629--15674739	49	2.3	49	75	9	109	30	17	24	27	1.97
15677691--15677731	6	6.5	6	86	10	55	80	0	2	17	0.82
15688822--15688854	11	2.8	12	86	4	50	51	12	3	33	1.54
15696561--15696664	17	5.6	18	68	28	67	51	1	3	42	1.31
15707296--15707328	4	8.2	4	93	0	57	72	0	24	3	0.98
15729246--15729283	20	1.9	20	88	0	58	71	10	0	18	1.14
15731466--15731516	24	2.1	24	92	0	84	23	9	9	56	1.61
15731474--15731525	24	2.2	24	85	0	68	28	11	11	48	1.74
15733602--15733631	15	1.9	16	93	6	53	6	0	23	70	1.11
15737016--15737056	17	2.4	17	100	0	82	41	19	4	34	1.73
15740921--15740959	21	1.9	20	84	5	51	46	7	12	33	1.71
15743202--15743260	23	2.4	26	72	16	70	20	22	10	47	1.79
15744246--15744322	31	2.6	30	79	8	86	23	14	9	53	1.69
15744259--15744337	31	2.5	31	77	4	79	25	10	7	56	1.58
15748689--15748730	18	2.3	18	91	0	66	33	9	16	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15748690--15748730	9	4.6	9	87	0	55	34	9	17	39	1.82
15753937--15753969	14	2.3	15	89	5	50	57	6	9	27	1.53
15756077--15756154	41	1.9	40	82	10	95	67	1	23	7	1.23
15765137--15765318	58	3.1	57	80	10	201	45	1	1	52	1.18
15765472--15765527	16	3.4	16	83	9	76	30	32	1	35	1.68
15765481--15765529	18	2.9	16	82	11	71	26	32	4	36	1.75
15765574--15765630	29	2.0	29	92	0	96	24	7	10	57	1.56
15771270--15771296	14	1.9	14	100	0	54	51	0	3	44	1.19
15774623--15774672	25	2.0	25	84	7	66	62	10	8	20	1.52
15785479--15785551	11	6.4	11	80	16	78	4	26	0	69	1.06
15785480--15785550	22	3.1	23	83	15	94	4	26	0	69	1.07
15786073--15786115	20	2.2	20	95	0	77	16	18	25	39	1.91
15787176--15787227	7	7.4	7	83	16	72	28	0	0	71	0.87
15787177--15787226	3	15.7	3	80	12	55	30	0	0	70	0.88
15794958--15794992	13	2.5	14	90	9	54	0	20	0	80	0.72
15806524--15806581	21	2.8	22	79	10	77	77	0	15	6	0.97
15878769--15878814	22	2.0	23	91	4	76	52	0	0	47	1.00
15879748--15879811	31	2.2	28	88	8	92	46	4	0	48	1.23
15879748--15879811	28	2.2	30	86	8	87	46	4	0	48	1.23
15887166--15887353	40	4.7	40	77	7	159	30	19	23	26	1.98
15887166--15887353	80	2.3	80	79	7	195	30	19	23	26	1.98
15892091--15892421	42	7.8	40	71	17	163	27	25	25	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15892091--15892421	41	7.8	40	71	16	170	27	25	25	22	2.00
15892177--15892276	52	1.9	52	85	4	139	28	24	30	18	1.97
15892135--15892315	93	1.9	94	83	5	233	27	27	26	18	1.98
15892514--15892578	25	2.6	25	90	7	96	29	47	4	18	1.68
15892514--15892587	26	2.9	25	75	20	64	27	45	6	20	1.76
15892514--15892590	25	3.0	24	75	20	68	25	45	6	22	1.76
15892605--15892723	44	2.7	43	81	3	121	15	47	9	27	1.77
15894606--15894646	20	2.0	22	85	9	59	63	0	0	36	0.95
15894653--15894963	8	36.3	9	64	25	83	48	0	5	46	1.24
15894653--15895110	49	9.4	49	92	4	734	48	0	5	45	1.27
15894653--15895110	146	3.1	145	93	3	744	48	0	5	45	1.27
15895064--15895119	18	3.2	17	75	12	51	51	0	1	46	1.11
15894653--15895110	97	4.7	97	92	4	737	48	0	5	45	1.27
15900635--15900791	66	2.4	66	85	2	217	43	15	24	15	1.86
15900777--15900829	21	2.5	21	90	0	79	32	20	45	1	1.62
15901146--15901329	43	4.3	43	96	0	316	27	25	29	17	1.97
15902891--15902966	35	2.2	35	90	4	118	30	15	11	42	1.83
15906132--15906198	24	2.8	24	79	2	71	29	13	5	50	1.65
15908109--15908171	24	2.6	24	84	0	81	26	14	9	49	1.74
15917345--15917391	24	2.0	24	95	0	85	23	17	27	31	1.96
15918442--15918484	22	2.0	22	81	9	52	46	23	0	30	1.52
15920771--15920943	95	1.8	95	81	7	217	37	13	21	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15924576--15924625	24	2.1	24	96	0	91	46	14	16	24	1.83
15934008--15934073	22	3.0	22	79	0	78	37	16	12	33	1.86
15934105--15934231	49	2.6	49	91	0	200	33	19	14	31	1.93
15934784--15934853	36	1.9	36	100	0	140	40	21	5	32	1.77
15935827--15935897	24	3.0	24	85	0	97	30	26	22	19	1.98
15935830--15935917	24	3.7	24	81	0	95	34	22	22	20	1.97
15951977--15952340	143	2.5	145	78	13	389	44	9	4	42	1.55
15952375--15952535	46	3.4	45	68	18	119	44	12	3	39	1.60
15952237--15952480	130	1.9	129	86	3	348	45	9	2	41	1.52
15952374--15952567	98	2.0	98	88	4	293	45	10	4	39	1.58
15953352--15953506	42	3.7	41	81	6	177	36	24	18	20	1.94
15953480--15953533	27	2.0	27	100	0	108	33	37	18	11	1.86
15953438--15953640	69	2.9	71	86	5	252	36	27	16	19	1.93
15953507--15953788	42	7.0	42	82	9	336	35	24	18	21	1.95
15953561--15953620	30	2.0	30	90	0	93	33	28	13	25	1.93
15953450--15953662	72	3.0	71	86	4	254	35	27	16	20	1.94
15962031--15962071	17	2.4	17	91	0	64	53	12	12	21	1.70
15978032--15978074	4	10.8	4	89	0	68	46	0	30	23	1.52
15980131--15980192	30	2.1	30	96	0	115	8	6	38	46	1.59
15980383--15980420	13	3.0	13	88	3	51	23	15	21	39	1.92
15980628--15980703	7	10.9	7	78	0	80	23	23	25	27	2.00
15980611--15980703	21	4.6	20	80	9	100	23	23	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15980629--15980702	28	2.6	28	85	4	96	24	22	25	27	2.00
15987465--15987502	12	3.0	13	92	3	60	23	21	18	36	1.95
15987761--15987856	7	13.9	7	78	2	68	15	17	30	36	1.91
15987712--15987835	21	5.9	21	69	0	86	18	14	29	37	1.91
15988523--15988550	2	14.0	2	100	0	56	50	0	0	50	1.00
15993310--15993374	24	2.7	24	95	2	112	46	0	4	49	1.22
15993864--15994095	51	4.6	51	68	19	141	45	9	3	41	1.54
15993955--15993995	20	2.0	21	85	4	57	46	9	2	41	1.50
15993569--15994218	149	4.4	148	85	7	846	45	9	3	42	1.52
15997579--15997625	17	2.8	17	84	12	62	21	6	0	72	1.07
15997541--15997627	17	5.4	16	74	17	56	24	3	1	71	1.08
15997551--15997623	33	2.1	34	82	9	87	24	4	1	69	1.13
16009358--16009405	19	2.4	20	86	13	64	16	12	10	60	1.58
16009408--16009450	17	2.5	17	78	14	52	13	11	16	58	1.64
16036864--16036901	12	3.2	12	84	0	58	44	18	15	21	1.86
16036852--16036901	24	2.1	24	92	0	82	46	16	16	22	1.84
16045415--16045533	49	2.4	49	91	0	193	32	19	15	32	1.93
16046135--16046204	36	1.9	36	100	0	140	40	21	5	32	1.77
16047178--16047276	24	4.1	24	82	0	117	32	26	24	17	1.97
16063266--16063497	128	1.8	128	86	6	344	43	9	2	43	1.49
16063362--16063644	147	1.9	146	87	7	421	46	8	2	42	1.49
16064068--16064093	3	8.7	3	100	0	52	34	0	30	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16064463--16064774	42	7.4	42	90	0	462	34	24	19	21	1.96
16065173--16065232	21	2.7	22	82	12	79	5	15	0	80	0.88
16065173--16065237	11	5.9	11	78	20	57	6	13	1	78	1.01
16084227--16084309	14	6.0	14	70	6	53	24	20	22	32	1.98
16084277--16084310	7	5.0	7	85	7	52	14	26	26	32	1.95
16084235--16084291	21	2.7	21	88	0	87	28	19	22	29	1.98
16084285--16084328	13	3.5	13	78	3	54	18	25	18	38	1.92
16084965--16085000	12	2.9	12	95	4	63	36	0	25	38	1.56
16091538--16091682	7	21.0	7	70	2	60	18	17	26	37	1.93
16091535--16091682	14	10.7	14	71	8	90	18	16	27	37	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144