genome.fa.s7.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  55  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10900600--10900631	14	2.3	14	100	0	64	71	0	6	21	1.07
10905027--10905061	13	2.6	13	90	4	52	71	11	2	14	1.25
10918731--10918767	18	2.1	18	89	0	56	48	2	24	24	1.64
10930187--10930229	22	2.0	22	86	9	61	81	0	16	2	0.79
10943493--10943661	23	7.4	22	81	9	144	11	24	21	42	1.86
10943514--10943661	46	3.2	45	83	7	167	12	22	21	43	1.86
10943517--10943661	69	2.1	66	86	10	193	12	23	20	43	1.86
10950854--10951022	23	7.4	22	81	9	144	11	24	21	42	1.86
10950875--10951022	46	3.2	45	83	7	167	12	22	21	43	1.86
10950878--10951022	69	2.1	66	86	10	193	12	23	20	43	1.86
10953106--10953534	211	2.0	211	100	0	858	52	19	11	16	1.73
10965900--10966192	147	2.0	146	93	0	505	34	20	19	25	1.96
10967896--10967991	38	2.5	39	83	9	119	27	21	22	28	1.99
10975555--10975675	23	5.2	23	82	11	156	11	25	23	39	1.88
10975555--10975675	48	2.6	46	87	7	172	11	25	23	39	1.88
10975679--10975743	23	2.9	23	81	2	78	10	21	18	49	1.78
10978422--10978450	14	2.0	15	93	6	51	55	10	0	34	1.34
10979876--10979941	30	2.2	31	86	2	89	34	21	18	25	1.96
10979893--10979957	30	2.2	30	82	0	76	33	16	21	27	1.95
10990338--10990377	21	1.9	21	89	0	62	32	27	10	30	1.89
10997373--10997416	18	2.5	17	82	10	52	31	0	2	65	1.05
10998134--10998217	41	2.0	42	81	4	98	34	2	3	59	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11000369--11000409	16	2.6	16	78	21	50	31	2	0	65	1.05
11000795--11000828	12	2.8	13	91	8	54	32	2	0	64	1.08
11005519--11005581	13	4.8	13	79	9	67	58	6	1	33	1.33
11005529--11005612	27	3.1	27	81	10	107	63	7	1	28	1.28
11008384--11008427	13	3.2	13	83	6	52	18	25	18	38	1.92
11015519--11015623	7	15.0	7	76	4	95	20	24	22	32	1.98
11015519--11015623	28	3.8	28	79	3	113	20	24	22	32	1.98
11017107--11017155	17	2.6	19	78	12	57	46	2	4	46	1.33
11017131--11017242	59	1.9	56	87	5	161	42	3	3	50	1.37
11018022--11018068	23	2.0	23	100	0	94	48	12	21	17	1.79
11022171--11022204	18	1.9	18	88	5	52	47	8	8	35	1.66
11022577--11022637	26	2.3	26	86	5	79	39	13	3	44	1.60
11022577--11022637	13	4.7	13	76	15	63	39	13	3	44	1.60
11023652--11023682	9	3.4	9	90	0	53	67	9	0	22	1.19
11024412--11024476	12	5.5	12	70	23	57	33	1	23	41	1.64
11025491--11025559	24	2.9	24	88	0	93	27	0	43	28	1.55
11025500--11025758	24	11.0	23	69	15	129	20	1	49	28	1.57
11025504--11025689	69	2.6	72	88	5	263	19	1	50	28	1.55
11025631--11025734	44	2.3	45	95	3	183	17	1	54	25	1.53
11025548--11025800	119	2.1	119	98	0	488	19	1	50	28	1.57
11025795--11025862	30	2.3	30	84	5	84	23	4	44	27	1.72
11025849--11025898	9	5.6	9	73	17	50	20	0	60	20	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11025851--11025898	18	2.7	18	90	0	69	18	0	60	20	1.36
11025880--11026677	398	2.0	398	99	0	1569	30	6	37	25	1.82
11031792--11031947	31	5.2	30	67	27	100	36	3	28	32	1.73
11031730--11031985	59	4.4	59	91	2	401	34	2	30	32	1.71
11031730--11031991	28	8.9	30	67	23	125	34	2	30	32	1.72
11033944--11033988	16	2.7	17	86	6	65	57	2	0	40	1.11
11033959--11034008	23	2.2	24	79	17	61	54	4	0	42	1.19
11033947--11034000	27	2.0	28	85	3	74	55	5	0	38	1.23
11033966--11034008	11	3.9	11	82	8	52	53	4	0	41	1.21
11036850--11036880	14	2.1	15	94	5	55	12	6	6	74	1.21
11041600--11041636	6	6.3	6	87	6	58	45	0	0	54	1.00
11041588--11041636	23	2.1	23	78	17	57	42	0	2	55	1.11
11041584--11041633	17	3.0	17	88	5	75	38	0	2	60	1.09
11041604--11041642	17	2.3	17	86	0	51	48	2	0	48	1.15
11041879--11041929	26	2.0	26	84	7	68	19	43	19	17	1.89
11042470--11042510	15	2.7	15	84	3	55	56	0	0	43	0.99
11043619--11043811	30	6.4	30	90	3	273	37	18	3	40	1.67
11044012--11044057	15	3.0	16	75	12	51	23	15	6	54	1.64
11051625--11051676	28	2.0	28	85	11	74	48	13	5	32	1.66
11056174--11058303	38	55.2	39	69	15	1089	33	15	17	33	1.91
11056328--11058298	76	25.7	76	91	2	3117	33	15	17	33	1.91
11057848--11058303	243	1.9	243	93	0	786	33	16	16	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11058591--11058627	6	6.3	6	87	6	58	45	0	0	54	1.00
11058579--11058627	23	2.1	23	78	17	57	42	0	2	55	1.11
11058575--11058624	17	3.0	17	88	5	75	38	0	2	60	1.09
11058595--11058633	17	2.3	17	86	0	51	48	2	0	48	1.15
11059461--11059501	15	2.7	15	84	3	55	56	0	0	43	0.99
11060611--11060841	30	7.7	30	82	7	256	38	20	2	37	1.67
11060641--11060864	60	3.7	59	83	7	231	37	20	2	38	1.67
11061002--11061047	15	3.0	16	75	12	51	23	15	6	54	1.64
11060987--11061047	30	2.0	30	84	9	79	21	16	8	54	1.68
11070210--11070262	21	2.5	21	81	0	61	33	9	20	35	1.85
11071468--11071515	24	2.0	24	100	0	96	33	12	29	25	1.92
11076090--11076165	37	2.1	37	83	14	95	14	19	32	32	1.92
11078152--11078199	20	2.4	18	78	18	51	50	0	2	47	1.12
11089849--11089911	17	3.6	17	80	2	63	49	12	17	20	1.79
11124845--11124905	32	1.9	32	86	6	88	18	13	3	65	1.39
11128379--11128418	21	1.9	21	85	10	55	35	7	5	52	1.51
11129381--11129417	19	2.0	18	89	5	56	54	10	0	35	1.36
11133657--11133713	21	2.7	21	88	0	87	33	21	26	19	1.97
11140036--11140467	196	2.2	195	87	0	612	30	16	25	28	1.97
11163617--11163663	24	2.0	24	87	8	69	51	8	12	27	1.69
11166277--11166320	18	2.4	19	92	3	72	0	34	2	63	1.07
11173674--11173720	24	2.0	24	87	8	69	51	8	12	27	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11175159--11175236	25	3.2	25	81	3	95	30	6	16	46	1.72
11175228--11175316	23	3.9	23	81	0	106	32	8	19	39	1.83
11175205--11175315	46	2.4	46	82	8	143	32	7	18	41	1.78
11175705--11175751	24	2.0	24	83	8	60	25	6	19	48	1.72
11177008--11177340	158	2.1	158	88	2	490	29	24	23	22	1.99
11178928--11178965	17	2.2	18	95	4	69	60	0	34	5	1.19
11185085--11185209	23	5.3	23	77	12	112	43	19	24	12	1.86
11203423--11203555	7	19.0	7	76	0	95	21	19	24	34	1.96
11203510--11203583	28	2.8	26	77	8	78	21	14	22	40	1.90
11203453--11203563	21	5.3	21	75	0	105	20	17	26	36	1.94
11208460--11208502	19	2.3	19	83	0	59	27	0	4	67	1.10
11209728--11209775	15	3.0	17	82	14	66	22	4	0	72	1.01
11209730--11209781	15	3.4	15	77	17	54	21	3	0	75	0.97
11213726--11213776	22	2.4	21	74	6	50	62	1	1	33	1.17
11218275--11218359	23	3.7	23	76	6	100	41	30	14	14	1.85
11229670--11229816	58	2.5	58	81	10	174	45	1	2	51	1.21
11229995--11230038	16	2.8	16	78	0	52	22	27	2	47	1.63
11234007--11234047	19	2.1	20	95	4	75	56	0	9	34	1.32
11245117--11245155	18	2.1	19	85	4	53	48	0	0	51	1.00
11259739--11259779	3	13.7	3	100	0	82	68	0	0	31	0.90
11260782--11260854	7	10.7	7	85	5	96	34	27	23	15	1.94
11260781--11260854	20	3.6	21	85	5	98	35	27	22	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11260782--11260854	27	2.7	27	93	0	128	34	27	23	15	1.94
11260844--11260891	21	2.3	21	85	0	60	31	31	20	16	1.95
11260934--11260975	20	2.1	20	86	0	57	19	2	33	45	1.63
11262377--11262422	21	2.2	21	84	3	58	13	10	13	63	1.53
11262482--11262520	20	2.0	20	84	0	51	10	10	10	69	1.38
11265313--11265434	36	3.4	36	86	1	163	37	26	14	21	1.92
11265402--11265509	56	1.9	56	84	3	146	31	29	17	21	1.96
11272897--11272944	16	3.1	16	82	11	55	56	0	0	43	0.99
11272976--11273076	21	4.9	21	71	9	55	44	1	1	51	1.24
11272952--11273066	61	1.9	61	88	0	176	40	1	2	54	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144