genome.fa.s7.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  24  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5966130--5966461	29	11.5	28	69	26	180	35	3	28	31	1.74
5967476--5967501	3	8.7	3	100	0	52	30	0	0	69	0.89
5968536--5968735	37	5.4	36	69	23	155	32	19	13	34	1.91
5968528--5968831	75	4.0	75	95	1	529	33	18	14	33	1.91
5968535--5968811	38	7.4	37	65	18	128	33	18	13	34	1.90
5980593--5980742	30	5.0	30	90	4	223	36	26	3	34	1.73
5980746--5980940	30	6.6	29	69	12	121	31	28	3	35	1.75
5980714--5980972	59	4.4	59	86	3	326	32	29	3	34	1.76
5980714--5981007	118	2.5	118	82	5	328	30	29	5	34	1.79
5983420--5983467	19	2.8	16	77	17	60	14	6	31	47	1.69
5986633--5986673	19	2.3	17	87	8	55	70	2	17	9	1.25
5986864--5986938	6	12.7	6	73	18	68	40	4	0	56	1.18
5986853--5986907	27	2.0	28	89	3	85	38	1	1	58	1.20
5986853--5986937	38	2.2	36	86	12	109	37	3	1	57	1.23
5986870--5986938	11	5.9	11	79	17	77	39	4	0	56	1.19
5986863--5986937	38	2.1	36	90	9	118	38	4	0	57	1.18
5986903--5986930	14	2.0	14	100	0	56	35	7	0	57	1.26
5987704--5987728	12	2.1	12	100	0	50	48	0	0	52	1.00
5988512--5988842	162	2.0	162	87	4	472	25	17	13	43	1.86
5988906--5989260	59	6.1	58	87	3	480	30	30	4	34	1.77
5988906--5989261	117	3.0	117	87	2	518	30	30	4	34	1.77
5988906--5989231	29	11.1	28	68	15	144	30	30	3	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5988911--5989255	176	2.0	176	89	1	530	31	28	4	35	1.76
5988942--5989260	29	10.9	30	67	21	160	31	29	3	35	1.75
6001514--6002049	76	7.0	76	94	0	856	34	15	15	34	1.89
6002333--6002388	11	4.9	11	82	8	67	37	3	1	57	1.27
6003083--6003137	28	1.9	29	85	3	76	43	7	1	47	1.41
6003111--6003176	32	2.1	32	85	5	89	48	3	3	45	1.33
6003949--6004241	162	1.8	161	87	3	444	25	17	12	44	1.84
6003949--6004282	162	2.1	161	85	5	442	26	17	12	43	1.85
6004342--6004699	177	2.0	178	91	1	585	31	29	3	34	1.76
6004342--6004699	59	6.1	59	89	1	529	31	29	3	34	1.76
6010211--6010391	6	30.2	6	93	0	272	32	4	0	61	1.21
6016788--6016877	6	15.8	6	68	14	57	50	3	0	46	1.18
6016788--6016877	11	7.9	12	71	15	57	50	3	0	46	1.18
6016802--6016877	17	4.5	17	76	5	82	52	3	0	43	1.19
6016788--6016877	34	2.6	34	75	6	101	50	3	0	46	1.18
6020406--6020475	29	2.4	30	81	11	85	30	0	4	65	1.11
6022025--6022062	19	2.0	19	89	0	58	28	23	13	34	1.92
6024069--6024248	89	2.0	90	88	3	265	46	8	11	34	1.70
6024625--6024665	22	1.9	22	85	5	57	7	7	14	70	1.31
6024698--6024764	24	3.0	21	76	19	73	10	4	13	71	1.27
6024713--6024758	12	3.8	12	82	5	58	10	2	13	73	1.17
6024712--6024759	24	2.0	24	92	8	80	12	4	12	70	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6024926--6024950	12	2.1	12	100	0	50	24	0	8	68	1.16
6026507--6026553	14	3.5	13	82	8	51	2	17	2	78	0.94
6026519--6026559	20	2.0	20	86	9	57	4	21	0	73	1.02
6029544--6029856	119	2.6	118	86	5	425	32	3	30	33	1.76
6029803--6029866	30	2.2	29	83	8	76	29	4	34	31	1.78
6029544--6029856	59	5.3	59	83	3	389	32	3	30	33	1.76
6030991--6031025	6	5.8	6	86	0	52	51	0	0	48	1.00
6031730--6031805	11	6.8	11	73	8	64	52	2	2	42	1.29
6031716--6031782	34	2.0	34	82	5	82	53	2	1	41	1.25
6032132--6033149	76	13.8	76	87	5	1357	31	19	15	33	1.93
6032132--6033051	38	25.0	37	65	17	278	31	19	15	33	1.93
6032132--6033128	145	6.8	145	87	7	1281	31	19	15	33	1.93
6034990--6035523	267	2.0	266	99	0	1059	22	28	14	34	1.94
6038233--6038266	14	2.3	15	90	5	52	2	23	2	70	1.15
6045532--6046015	59	8.2	59	85	3	645	33	3	29	33	1.73
6045522--6046015	117	4.2	118	87	2	674	33	3	30	33	1.74
6045962--6046027	30	2.2	29	76	15	73	28	3	34	33	1.73
6045971--6046027	29	2.0	28	83	10	71	31	1	33	33	1.68
6047903--6047978	11	6.8	11	73	8	64	52	2	2	42	1.29
6047889--6047955	34	2.0	34	82	5	82	53	2	1	41	1.25
6052482--6052556	29	2.5	31	79	14	86	28	0	5	66	1.13
6054143--6054180	19	2.0	19	89	0	58	28	23	13	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6054710--6054764	30	1.9	27	85	10	74	47	0	32	20	1.50
6056316--6056495	89	2.0	90	88	3	265	46	8	11	34	1.70
6056872--6056912	22	1.9	22	85	5	57	7	7	14	70	1.31
6056945--6057011	24	3.0	21	76	19	73	10	4	13	71	1.27
6056960--6057005	12	3.8	12	82	5	58	10	2	13	73	1.17
6056959--6057006	24	2.0	24	92	8	80	12	4	12	70	1.29
6057173--6057197	12	2.1	12	100	0	50	24	0	8	68	1.16
6063217--6063400	89	2.1	90	88	3	273	47	8	10	34	1.67
6063777--6063817	22	1.9	22	85	5	57	7	7	14	70	1.31
6063825--6063864	20	2.1	19	86	9	55	7	5	22	65	1.38
6063788--6063860	23	3.2	23	76	9	69	5	4	19	71	1.22
6063883--6063919	12	3.2	12	88	7	58	10	0	13	75	1.04
6063774--6063937	76	2.1	77	81	11	187	10	4	16	68	1.33
6064078--6064102	12	2.1	12	100	0	50	24	0	8	68	1.16
6076297--6076334	16	2.4	16	90	0	58	57	0	2	39	1.12
6076744--6076783	19	2.2	18	86	8	55	45	7	2	45	1.45
6079225--6079270	8	5.8	8	92	0	56	50	10	0	39	1.38
6079225--6079267	12	3.6	12	87	0	59	51	11	0	37	1.39
6081505--6081541	16	2.2	17	90	4	58	40	2	0	56	1.13
6082195--6082463	138	1.9	138	99	0	529	39	8	15	35	1.79
6096320--6096378	20	3.0	20	73	14	59	15	27	27	30	1.96
6103260--6103671	148	2.8	149	86	2	544	44	3	9	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6103547--6103729	100	1.8	100	85	3	262	42	3	10	44	1.55
6103398--6103865	244	1.9	249	84	3	644	43	2	10	43	1.53
6106270--6106423	56	2.7	58	83	7	190	42	2	3	51	1.32
6112487--6112807	158	2.0	158	87	1	464	23	24	23	28	2.00
6121502--6121580	36	2.2	36	95	0	140	30	18	24	26	1.98
6134019--6134090	6	12.3	6	75	5	67	45	2	0	51	1.15
6134019--6134069	23	2.2	24	89	3	77	49	3	0	47	1.20
6134040--6134120	17	4.7	17	81	6	83	45	2	2	49	1.28
6134019--6134086	23	3.2	22	74	20	72	47	2	0	50	1.16
6134024--6134120	17	5.6	17	77	6	79	45	3	2	49	1.29
6135998--6136364	58	6.3	58	86	2	477	32	28	3	35	1.74
6136028--6136364	29	11.6	27	71	20	195	32	28	3	35	1.74
6136346--6136410	28	2.3	28	78	19	80	30	24	12	32	1.92
6148600--6148824	92	2.5	91	89	1	342	34	18	20	26	1.95
6148776--6149416	38	16.9	37	65	25	251	33	17	17	31	1.93
6148776--6149459	76	9.0	76	92	2	1042	33	16	17	31	1.93
6149354--6149459	35	3.1	34	73	21	105	35	16	16	31	1.91
6149753--6149797	17	2.6	18	82	3	56	40	4	2	53	1.33
6151700--6151977	29	9.4	29	70	17	164	32	27	3	36	1.73
6151668--6152005	59	5.8	59	86	3	425	32	28	3	35	1.75
6167693--6167733	20	2.0	21	85	4	57	41	4	2	51	1.36
6168097--6168127	14	2.1	15	94	5	55	25	0	3	70	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6168210--6168251	22	2.0	22	86	9	61	50	0	2	47	1.14
6170108--6170266	80	2.0	80	92	0	264	32	9	22	35	1.86
6174485--6174538	23	2.2	25	83	6	67	70	0	12	16	1.17
6192543--6192581	15	2.8	13	82	17	51	71	2	7	17	1.21
6192833--6192858	12	2.2	12	100	0	52	53	7	7	30	1.57
6206067--6206091	13	1.9	13	100	0	50	40	20	0	40	1.52
6206955--6207001	22	2.1	23	84	11	62	21	8	17	53	1.70
6216104--6216170	29	2.3	29	84	0	89	19	20	35	23	1.95
6221835--6221872	20	1.9	20	88	0	58	36	15	10	36	1.82
6222452--6222538	32	2.8	32	91	5	135	20	2	27	49	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144