genome.fa.s7.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  80  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17906077--17906148	29	2.4	29	83	4	81	37	4	12	45	1.61
17906098--17906156	29	2.0	30	90	3	93	32	3	13	50	1.58
17909096--17909138	20	2.1	21	83	12	54	53	0	0	46	1.00
17909119--17909216	19	5.2	18	71	11	63	59	2	4	34	1.28
17909109--17909160	18	2.8	18	75	11	52	53	0	1	44	1.11
17909174--17909216	22	2.0	21	86	8	61	65	0	2	32	1.06
17909164--17909227	30	2.1	31	82	5	78	64	1	3	31	1.19
17909367--17909468	10	10.2	10	67	15	59	35	1	0	62	1.06
17909292--17909398	28	3.8	27	65	15	65	28	10	0	61	1.28
17909366--17909412	19	2.5	19	82	3	60	27	2	0	70	0.99
17909387--17909459	30	2.4	31	84	9	96	38	0	0	61	0.96
17909395--17909471	30	2.6	29	86	8	102	37	1	0	61	1.05
17915992--17916034	18	2.5	17	76	3	50	34	0	2	62	1.08
17917869--17918315	195	2.3	194	78	3	488	25	25	19	29	1.98
17919730--17919787	22	2.7	22	91	2	100	44	6	0	48	1.29
17921836--17921866	7	4.4	7	95	0	53	51	16	16	16	1.77
17921827--17921866	21	1.9	21	84	0	53	50	15	15	20	1.79
17923300--17923447	73	2.0	73	97	0	278	35	12	14	37	1.84
17924135--17924176	19	2.2	19	83	8	50	38	2	11	47	1.53
17924575--17924655	34	2.4	34	87	0	117	20	34	2	41	1.66
17924600--17924658	17	3.5	17	68	25	52	22	30	1	45	1.62
17925124--17925190	33	2.0	34	85	2	91	28	8	17	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17933165--17933209	14	2.9	16	80	16	58	53	0	0	46	1.00
17937701--17937746	23	2.0	23	100	0	92	47	8	26	17	1.76
17942444--17942542	28	3.5	28	78	0	108	25	22	18	34	1.96
17964649--17964715	34	2.0	34	87	0	98	32	4	8	53	1.52
17964799--17964850	26	2.0	26	92	0	86	44	36	13	5	1.68
17965391--17965445	15	3.7	15	79	13	69	49	0	0	50	1.00
17965389--17965446	9	6.9	9	72	21	54	50	0	0	50	1.00
17978443--17979547	209	5.3	209	88	2	1486	36	17	22	22	1.94
17979921--17979953	6	5.7	6	85	7	50	42	3	0	54	1.15
17979880--17979960	17	4.8	17	84	0	99	39	4	3	51	1.41
17981767--17981857	29	3.2	28	83	9	103	32	24	10	31	1.90
17985009--17985180	57	2.8	60	81	13	201	27	16	6	48	1.72
17985050--17985181	63	2.1	65	88	5	198	27	17	6	49	1.70
17987123--17987208	20	4.6	19	80	13	108	52	2	0	45	1.13
17987137--17987212	20	4.0	20	84	10	113	52	2	0	44	1.14
17987123--17987208	37	2.3	37	100	0	172	52	2	0	45	1.13
17988077--17988135	30	2.0	30	100	0	118	47	10	25	16	1.78
17988942--17988977	16	2.2	16	90	0	54	19	19	27	33	1.96
17993540--17993595	11	4.7	11	77	16	58	64	1	0	33	1.04
17993539--17993596	22	2.5	24	83	10	77	63	1	0	34	1.04
18006176--18006204	15	2.0	15	93	6	51	27	17	6	48	1.72
18008482--18008581	50	2.0	50	94	0	173	44	9	24	23	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18010879--18010940	30	2.1	30	100	0	124	43	19	16	20	1.88
18011977--18012024	11	4.4	11	79	10	53	33	27	0	39	1.57
18011985--18012032	23	2.1	23	92	3	80	35	25	0	39	1.56
18012210--18012279	29	2.4	29	80	4	72	30	0	0	70	0.88
18015439--18015485	14	3.5	14	80	8	53	53	0	2	44	1.12
18018140--18018266	43	3.0	42	75	6	130	30	9	21	38	1.85
18018455--18018510	27	2.0	28	89	3	87	17	14	19	48	1.81
18020429--18020478	2	25.0	2	100	0	100	50	0	0	50	1.00
18023216--18023272	4	13.8	4	81	7	69	73	1	0	24	0.92
18023217--18023273	21	2.8	19	82	12	69	73	1	0	24	0.92
18023216--18023272	29	2.0	29	89	0	87	73	1	0	24	0.92
18024900--18025706	50	16.1	50	69	5	385	26	18	18	37	1.93
18024913--18025570	200	3.3	199	83	1	780	25	18	17	37	1.93
18024913--18025570	100	6.6	100	80	0	679	25	18	17	37	1.93
18025430--18025745	150	2.1	150	82	1	400	26	20	18	34	1.95
18027716--18027820	45	2.4	44	76	12	115	41	11	19	27	1.85
18033255--18033290	10	3.5	10	88	3	54	63	0	0	36	0.94
18033256--18033304	20	2.6	19	81	9	55	57	2	0	40	1.10
18033256--18033374	54	2.2	54	80	4	123	55	2	1	40	1.23
18040832--18040911	39	2.1	39	100	0	160	41	26	10	22	1.85
18052734--18052787	21	2.6	21	85	5	74	29	12	25	31	1.93
18056752--18056784	12	2.6	13	85	4	50	69	12	3	15	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18063709--18064087	193	2.0	193	89	2	582	29	18	17	34	1.94
18077216--18077244	15	1.9	15	100	0	58	10	13	6	68	1.37
18079582--18079624	19	2.4	17	80	7	50	13	9	13	62	1.53
18080214--18080268	25	2.2	26	84	12	71	78	0	20	1	0.85
18080231--18080279	5	9.8	5	83	16	66	81	0	18	0	0.69
18080230--18080279	24	2.0	25	88	11	77	82	0	18	0	0.68
18082968--18082999	16	2.0	16	93	0	55	78	0	6	15	0.95
18083032--18083075	12	3.4	12	80	17	52	15	4	0	79	0.89
18083022--18083077	18	3.4	17	76	18	55	16	5	1	76	1.05
18083013--18083077	19	3.4	19	72	19	62	16	4	1	76	1.02
18084828--18084906	29	2.7	29	86	0	113	18	30	35	15	1.92
18084815--18084922	29	3.7	28	76	8	90	21	31	33	13	1.92
18086268--18086302	18	1.9	18	88	0	52	31	31	2	34	1.73
18093989--18094027	11	3.5	11	82	6	51	17	46	23	12	1.83
18094245--18094288	23	1.9	23	81	9	54	65	9	13	11	1.46
18097607--18097676	34	2.1	34	100	0	140	15	27	25	31	1.96
18097795--18097982	80	2.3	80	92	0	304	19	18	29	32	1.95
18100013--18100046	18	1.9	17	88	5	50	32	0	0	67	0.91
18105631--18105704	31	2.4	32	78	15	84	33	4	8	54	1.49
18106921--18106972	23	2.3	23	79	0	59	50	9	11	28	1.70
18107703--18107745	22	2.0	21	86	4	59	41	0	4	53	1.21
18108468--18108526	20	3.0	20	73	11	59	61	0	1	37	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18108484--18108620	10	14.3	10	73	9	65	63	1	3	31	1.20
18108474--18108566	39	2.4	40	80	12	104	62	1	2	34	1.14
18108505--18108620	56	2.1	56	83	6	146	62	1	3	31	1.21
18108552--18108645	38	2.4	41	81	12	108	61	3	4	30	1.31
18108474--18108622	46	3.1	46	84	9	158	61	1	3	33	1.21
18108668--18108700	11	3.1	11	91	4	50	30	3	0	66	1.06
18108665--18108716	10	5.4	9	80	11	50	23	3	1	71	1.13
18109006--18109221	91	2.5	83	81	10	236	31	7	20	40	1.81
18121437--18121474	20	1.9	20	88	0	58	28	5	5	60	1.40
18122712--18122750	20	2.0	19	85	5	51	46	5	25	23	1.73
18124217--18124259	21	2.0	22	86	9	61	41	0	2	55	1.12
18127755--18127790	15	2.4	15	90	0	54	38	13	25	22	1.91
18134396--18134463	34	2.0	34	100	0	136	32	11	23	32	1.91
18152091--18152124	14	2.3	15	90	5	52	29	5	11	52	1.61
18152371--18152401	15	2.1	15	100	0	62	12	38	6	41	1.69
18157311--18157350	12	3.5	12	83	16	50	77	0	17	5	0.94
18158309--18158352	14	2.9	15	83	13	54	77	0	20	2	0.88
18159249--18159497	49	5.1	49	77	5	218	37	16	26	20	1.93
18159249--18159494	98	2.5	98	84	3	291	37	16	26	19	1.93
18159746--18160032	42	6.8	42	89	0	376	29	27	16	27	1.97
18159745--18160105	126	2.8	126	81	1	398	29	27	15	27	1.96
18160035--18160128	46	2.0	46	89	0	143	35	23	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18160151--18160320	75	2.3	75	91	0	277	39	18	22	19	1.92
18160277--18160416	48	2.9	48	89	4	203	41	15	22	21	1.90
18160372--18160567	75	2.6	76	89	2	288	39	16	20	23	1.92
18160524--18160616	48	1.9	48	84	0	123	39	15	22	22	1.91
18160505--18160912	145	2.8	145	88	0	611	37	17	22	21	1.94
18160814--18160907	48	2.0	48	86	0	134	38	17	24	20	1.93
18160936--18161077	48	3.0	47	85	2	185	40	18	21	20	1.92
18160795--18161029	123	1.9	122	92	0	389	39	19	21	20	1.93
18160936--18161077	47	3.0	46	86	4	176	40	18	21	20	1.92
18160814--18161149	170	2.0	170	88	4	500	40	18	21	19	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144