genome.fa.s7.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  102  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23870216--23870263	24	2.0	24	83	4	60	39	0	6	54	1.26
23873093--23873149	29	2.0	29	86	6	80	28	3	5	63	1.33
23881172--23881223	19	2.7	19	82	11	61	38	0	9	51	1.35
23881172--23881237	20	3.3	20	83	8	73	39	0	10	50	1.37
23881466--23881516	24	2.1	24	96	0	93	21	11	9	56	1.63
23881474--23881528	24	2.3	24	90	0	83	27	12	10	49	1.74
23885657--23885702	23	2.0	24	83	8	60	28	8	6	56	1.54
23887204--23887281	31	2.6	29	86	11	104	51	7	0	41	1.31
23887940--23887994	24	2.3	24	87	0	74	54	10	9	25	1.64
23887950--23887996	24	2.0	24	95	0	85	59	8	6	25	1.50
23891230--23891261	1	32.0	1	100	0	64	0	100	0	0	0.00
23893024--23893056	15	2.1	16	88	5	50	63	15	0	21	1.30
23897442--23897635	73	2.7	73	91	0	307	38	21	7	32	1.81
23897562--23897643	43	1.9	43	87	5	121	40	21	4	32	1.75
23899739--23899794	28	2.0	28	96	0	103	26	16	17	39	1.91
23911662--23911700	20	2.0	20	85	10	53	38	2	5	53	1.37
23914674--23914746	17	4.2	17	79	6	83	56	2	2	38	1.28
23914684--23914752	36	1.9	36	93	0	120	59	5	1	33	1.30
23914694--23914750	30	1.9	30	82	7	71	59	5	1	33	1.30
23915060--23915109	13	3.8	13	73	19	50	38	14	6	42	1.70
23915269--23915299	16	1.9	16	93	0	53	48	6	6	38	1.55
23915844--23915895	24	2.2	24	96	0	95	38	11	9	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23918292--23918317	11	2.4	11	100	0	52	92	0	7	0	0.39
23924139--23924178	20	2.0	20	90	9	64	62	5	0	32	1.17
23924139--23924179	21	2.0	20	90	4	64	63	4	0	31	1.15
23924768--23924848	29	2.7	29	84	9	101	29	12	12	45	1.78
23924980--23925067	31	2.9	31	77	3	108	42	10	9	38	1.71
23926912--23926966	23	2.4	23	75	3	58	36	7	5	50	1.53
23927527--23927599	33	2.2	33	85	4	103	15	12	8	64	1.49
23927544--23927614	33	2.2	33	82	10	83	18	12	7	61	1.52
23933545--23933590	18	2.5	19	79	6	51	30	0	0	69	0.89
23936487--23936595	57	1.9	58	84	5	150	26	8	11	54	1.64
23936730--23936894	59	2.8	58	81	9	192	50	10	13	25	1.74
23940273--23940361	29	3.1	29	100	0	178	23	28	3	44	1.69
23948865--23948905	10	3.9	11	90	6	59	78	0	19	2	0.87
23948874--23948905	5	6.4	5	100	0	64	81	0	18	0	0.70
23952820--23952872	22	2.3	23	81	12	65	22	18	16	41	1.90
23953022--23953077	2	28.0	2	92	7	96	48	0	1	50	1.11
23953829--23953873	23	2.0	24	86	8	67	37	4	17	40	1.70
23954476--23954520	20	2.3	19	85	11	63	60	11	2	26	1.42
23954483--23954559	21	3.7	21	79	8	86	59	14	2	23	1.47
23961830--23961865	18	2.0	18	100	0	72	33	22	16	27	1.95
23968902--23968994	6	16.2	6	74	12	70	40	0	3	55	1.16
23968902--23968994	23	4.0	24	76	14	88	40	0	3	55	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23968900--23968985	17	5.1	17	88	0	127	38	0	3	58	1.15
23970529--23970930	30	13.7	30	77	9	323	36	25	3	35	1.73
23981791--23982469	208	3.3	207	87	1	928	36	18	22	23	1.95
23982173--23982329	85	1.8	85	82	2	199	35	17	24	22	1.95
23982804--23982889	17	5.1	17	84	0	109	36	0	4	59	1.18
23982810--23982889	34	2.4	34	91	0	124	37	0	5	57	1.21
23982810--23982898	23	3.9	24	71	15	71	40	0	4	55	1.20
23983952--23984277	30	11.1	29	78	9	227	36	27	2	33	1.70
23983947--23984277	60	5.7	58	81	6	296	36	27	2	33	1.71
23984540--23984727	97	1.9	97	90	0	295	27	18	16	37	1.92
23989362--23989425	31	2.1	31	85	5	85	35	10	10	42	1.75
23995832--23996130	159	1.9	158	81	8	365	25	24	15	35	1.94
23998778--23998805	14	2.0	14	100	0	56	50	0	0	50	1.00
24013509--24013696	23	8.4	23	77	13	169	45	21	21	11	1.83
24013563--24013696	70	1.9	68	83	8	173	43	22	23	11	1.85
24022283--24022351	11	6.6	11	76	18	60	50	0	1	47	1.09
24024235--24024267	17	1.9	17	100	0	66	48	12	3	36	1.56
24035303--24035352	18	2.8	17	81	3	55	64	8	2	26	1.32
24035323--24035365	17	2.5	17	85	11	52	65	13	4	16	1.43
24043458--24043519	17	3.5	17	82	8	79	43	0	3	53	1.17
24043490--24043531	17	2.5	17	88	0	57	52	0	0	47	1.00
24054540--24054579	15	2.7	15	84	3	55	37	20	0	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24057555--24057594	15	2.6	15	88	4	53	55	0	42	2	1.13
24057723--24058002	140	2.0	140	99	0	551	28	19	15	37	1.92
24058484--24058559	34	2.2	34	81	9	84	53	21	1	23	1.53
24058814--24058858	22	2.2	20	84	8	54	68	2	0	28	1.01
24060489--24060539	24	2.1	25	85	10	70	7	15	21	54	1.66
24064591--24064662	24	3.0	24	89	0	63	6	18	37	37	1.77
24064604--24064674	24	3.0	24	97	0	133	9	12	42	35	1.76
24064605--24064704	24	4.2	24	90	0	110	13	14	42	31	1.83
24064661--24064710	24	2.1	24	92	0	82	22	18	42	18	1.90
24064715--24064770	27	2.1	27	89	0	85	14	8	41	35	1.77
24065193--24065246	4	13.5	4	100	0	108	25	24	0	50	1.50
24069827--24069869	19	2.2	20	87	8	61	27	0	2	69	1.00
24072216--24072300	42	2.0	42	93	0	143	44	17	7	30	1.75
24076182--24076215	4	8.5	4	93	0	50	44	23	5	26	1.76
24078192--24078233	20	2.1	20	91	8	68	69	21	0	9	1.17
24078206--24078261	23	2.4	24	90	3	87	69	19	3	7	1.27
24078824--24078875	23	2.2	23	79	3	59	5	23	19	51	1.67
24078858--24078891	18	1.9	17	88	5	50	8	26	20	44	1.81
24079977--24080020	19	2.3	19	80	0	61	77	0	11	11	1.00
24080449--24080490	5	8.4	5	89	10	68	0	16	0	83	0.65
24085116--24085173	30	1.9	31	85	3	82	22	8	10	58	1.58
24092696--24092756	27	2.3	26	75	10	61	26	1	24	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24093660--24093699	20	2.1	19	86	9	55	27	2	12	57	1.48
24094629--24094661	11	2.8	12	90	9	50	33	0	3	63	1.10
24104316--24104544	118	1.9	117	89	4	354	24	24	14	36	1.93
24105124--24105275	59	2.6	59	78	9	150	28	7	6	57	1.51
24105147--24105235	31	3.1	28	72	10	81	26	4	6	61	1.40
24105522--24105595	31	2.5	30	77	4	78	50	8	8	33	1.62
24106917--24106953	19	1.9	19	88	0	56	51	0	0	48	1.00
24112658--24112710	21	2.5	21	100	0	106	30	22	13	33	1.92
24119401--24119452	2	26.0	2	100	0	104	50	0	0	50	1.00
24120071--24120112	21	2.0	21	86	9	59	40	0	0	59	0.97
24120076--24120125	19	2.5	20	81	15	52	34	2	0	64	1.05
24124173--24124198	2	13.0	2	100	0	52	50	0	0	50	1.00
24125837--24125861	6	4.2	6	100	0	50	36	0	48	16	1.46
24127112--24127144	17	1.9	17	88	11	50	36	3	0	60	1.12
24127137--24127214	31	2.6	29	78	11	79	39	0	3	56	1.18
24127206--24127238	16	2.0	17	88	5	50	45	0	0	54	0.99
24128800--24129117	158	2.0	158	89	2	487	26	16	13	43	1.85
24135519--24135621	27	3.8	27	78	0	107	25	18	22	33	1.96
24135600--24135665	27	2.4	27	87	0	96	27	18	22	31	1.97
24137601--24137651	7	7.6	7	78	8	52	19	13	23	43	1.87
24137601--24137654	26	2.1	26	85	0	72	18	14	22	44	1.86
24139683--24140170	58	8.4	59	85	4	576	34	2	29	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24139688--24140170	117	4.1	118	84	5	595	34	2	29	34	1.69
24139727--24140168	29	15.2	29	65	15	117	34	2	29	34	1.69
24141999--24142057	6	9.8	6	75	14	59	55	0	3	40	1.16
24142000--24142057	17	3.6	17	84	13	86	56	0	3	39	1.16
24142006--24142059	11	5.1	11	72	17	51	57	0	3	38	1.17
24142466--24143062	201	3.0	200	88	2	896	18	23	21	36	1.95
24149467--24149504	6	6.0	6	88	11	58	36	0	0	63	0.95
24149466--24149509	14	3.3	14	90	9	74	40	0	0	59	0.98
24153557--24153648	29	3.2	28	70	22	73	42	0	25	32	1.55
24153485--24153954	59	8.0	59	86	4	569	34	2	29	33	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144