genome.fa.s7.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  114  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26555683--26555760	34	2.3	34	79	2	93	1	57	0	41	1.07
26555693--26555790	48	2.0	48	90	0	151	0	56	0	43	0.99
26560643--26560681	19	2.0	21	90	10	64	66	2	5	25	1.25
26560643--26560689	20	2.3	21	82	14	62	63	8	4	23	1.40
26561480--26561571	46	2.0	46	86	0	130	31	7	26	34	1.84
26566803--26566900	9	10.9	9	89	0	151	44	16	11	27	1.81
26566800--26566900	18	5.6	18	100	0	202	45	15	10	27	1.80
26569445--26569517	30	2.4	30	93	0	119	10	32	21	34	1.89
26571186--26571232	17	2.7	17	77	22	53	38	4	0	57	1.18
26571406--26571431	2	13.0	2	100	0	52	0	50	0	50	1.00
26577876--26577928	20	2.7	20	79	5	63	32	3	7	56	1.45
26581008--26581048	17	2.4	17	88	8	57	39	0	4	56	1.21
26581765--26581800	3	11.7	3	88	5	54	63	0	0	36	0.94
26581770--26581807	12	3.2	12	92	0	58	60	0	0	39	0.97
26582965--26583221	29	8.9	27	68	20	112	32	27	5	34	1.80
26583015--26583323	59	5.3	58	82	8	319	32	27	4	35	1.77
26583032--26583323	115	2.5	117	81	7	355	32	28	4	34	1.77
26585437--26585475	3	12.7	3	89	5	60	33	0	2	64	1.08
26588105--26588296	97	2.0	98	90	1	305	39	16	16	28	1.90
26588556--26588893	30	11.5	29	74	15	162	36	2	25	35	1.72
26588573--26588892	59	5.4	57	73	11	198	35	2	25	35	1.71
26588573--26588900	29	11.1	29	75	11	132	36	2	25	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26590088--26590114	14	1.9	14	100	0	54	44	0	14	40	1.46
26590725--26590839	6	20.0	6	69	14	55	56	4	1	37	1.29
26590733--26590835	11	9.2	12	65	16	51	57	4	0	36	1.27
26590741--26590834	17	5.6	17	81	5	111	59	5	1	34	1.27
26590745--26590834	34	2.7	33	84	6	128	60	5	1	33	1.27
26590729--26590793	28	2.3	28	78	5	69	56	4	3	35	1.35
26593759--26593814	21	2.7	21	77	8	69	28	28	10	32	1.90
26593968--26594007	21	1.9	21	84	0	53	30	17	20	32	1.95
26599470--26599518	22	2.2	22	81	3	53	26	8	6	59	1.50
26604132--26604165	12	2.8	12	86	13	52	58	0	0	41	0.98
26604875--26604924	3	16.7	3	100	0	100	68	0	0	32	0.90
26605997--26606278	59	4.8	59	85	2	368	34	28	2	35	1.69
26605997--26606278	118	2.4	118	87	3	413	34	28	2	35	1.69
26618506--26619269	76	10.0	76	91	1	1199	34	14	17	33	1.90
26619578--26619611	12	2.8	12	86	13	52	58	0	0	41	0.98
26620334--26620384	3	17.0	3	100	0	102	66	0	0	33	0.92
26621469--26621921	59	7.8	59	88	3	571	32	30	3	32	1.76
26621508--26621893	29	13.2	31	69	21	203	32	30	3	33	1.75
26621880--26621939	28	2.1	28	84	0	75	28	33	11	26	1.91
26625291--26625326	13	2.8	13	91	0	63	33	8	22	36	1.84
26625355--26625415	6	10.7	6	77	10	65	52	0	3	44	1.17
26625355--26625415	23	2.7	23	89	2	97	52	0	3	44	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26625354--26625415	17	3.6	17	84	0	88	53	0	3	43	1.17
26625355--26625415	11	5.4	11	80	5	68	52	0	3	44	1.17
26625664--26627284	92	17.7	92	96	0	2888	32	19	15	32	1.93
26628767--26628810	14	3.2	14	83	6	63	0	15	6	77	0.97
26629637--26629680	5	8.8	5	92	7	72	0	0	15	84	0.63
26633292--26633328	16	2.2	18	85	9	51	16	16	8	59	1.59
26635063--26635110	25	1.9	25	86	0	69	29	14	20	35	1.93
26640315--26640607	60	4.9	57	80	12	290	40	2	22	34	1.67
26640315--26640595	30	9.4	29	83	9	259	41	2	21	34	1.67
26642037--26642169	6	22.0	6	71	14	96	52	4	3	39	1.37
26642050--26642111	17	3.6	17	81	14	74	51	8	1	38	1.41
26642079--26642154	23	3.3	23	96	0	134	53	2	1	42	1.23
26642085--26642170	11	8.0	11	71	14	72	56	2	2	38	1.25
26642064--26642169	17	6.4	17	75	14	89	54	3	1	39	1.29
26642692--26642835	39	3.7	39	74	0	135	25	20	30	23	1.98
26642750--26642859	39	2.8	38	73	17	91	21	17	33	27	1.96
26642640--26642883	78	3.1	77	82	2	263	25	18	30	26	1.98
26643111--26643747	49	12.9	49	74	10	496	17	26	19	37	1.93
26643114--26643465	99	3.6	98	88	1	483	17	26	19	37	1.93
26643114--26643747	148	4.3	147	78	10	573	17	26	19	37	1.93
26643133--26643747	99	6.2	96	80	9	450	17	26	20	36	1.94
26643407--26644254	49	17.2	49	69	13	239	17	29	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26643685--26644007	148	2.2	148	86	1	441	16	30	18	34	1.93
26643732--26644048	148	2.1	147	85	2	411	17	30	18	32	1.94
26643732--26644269	247	2.2	247	89	0	824	17	30	18	33	1.94
26643972--26644252	148	1.9	148	84	0	382	17	30	18	33	1.94
26643827--26644157	99	3.4	99	79	10	326	17	30	18	33	1.94
26643934--26644271	148	2.3	148	78	6	378	17	30	18	33	1.94
26646097--26646202	49	2.2	46	88	5	149	34	13	10	41	1.78
26649663--26649808	30	4.9	30	82	5	147	39	2	22	35	1.69
26649657--26649823	60	2.8	60	80	4	189	38	4	22	35	1.73
26650878--26650941	26	2.3	26	86	13	83	35	7	3	53	1.46
26651113--26651197	42	2.0	42	83	0	107	29	15	27	28	1.96
26652986--26653267	41	6.9	42	86	3	362	31	20	31	16	1.95
26652986--26653267	123	2.3	123	87	1	404	31	20	31	16	1.95
26655025--26655050	11	2.4	11	100	0	52	53	0	0	46	1.00
26656330--26656506	58	3.1	58	74	18	208	44	2	6	46	1.40
26656338--26656515	54	3.2	54	74	22	197	44	2	5	47	1.39
26656389--26656655	18	14.3	18	66	18	102	43	2	5	49	1.39
26656414--26656615	94	2.1	95	94	0	352	42	3	5	49	1.43
26656594--26656704	8	11.8	9	68	24	52	43	1	3	51	1.29
26656317--26656760	207	2.2	208	84	10	624	43	2	4	48	1.39
26656733--26656826	18	5.3	18	70	25	67	44	0	1	54	1.07
26656733--26656826	8	11.8	8	73	22	74	44	0	1	54	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26656747--26656826	30	2.6	30	88	11	110	43	0	1	55	1.08
26656594--26656828	22	11.2	21	66	18	107	43	1	2	51	1.25
26656848--26656913	33	2.1	31	94	5	114	42	6	9	42	1.61
26662354--26662494	66	2.1	66	93	0	237	46	16	21	15	1.84
26662749--26662777	15	1.9	15	100	0	58	13	3	34	48	1.60
26663196--26663234	6	6.5	6	85	11	53	48	2	28	20	1.62
26663361--26663446	38	2.3	38	95	0	154	23	18	23	34	1.96
26664583--26664614	11	2.9	11	95	0	55	56	3	3	37	1.31
26664594--26664632	18	2.2	17	90	4	60	56	0	5	38	1.22
26664583--26664654	29	2.5	28	84	4	90	56	5	2	34	1.37
26669222--26669648	59	7.3	59	85	2	531	35	2	29	32	1.72
26669222--26669645	58	7.2	58	85	2	528	35	2	29	32	1.72
26669222--26669645	117	3.6	117	86	2	532	35	2	29	32	1.72
26670679--26670730	21	2.5	20	79	17	61	40	0	3	55	1.18
26670711--26670783	31	2.3	31	83	4	83	36	6	5	50	1.52
26671472--26671535	11	5.8	11	76	7	67	54	1	1	42	1.19
26671474--26671532	17	3.6	16	80	8	73	57	1	1	38	1.19
26671830--26671923	41	2.2	41	79	3	98	50	8	6	35	1.59
26672870--26672905	19	1.9	19	88	5	56	52	2	16	27	1.57
26675131--26675178	25	1.9	25	86	0	69	31	20	18	29	1.97
26675341--26675394	16	3.3	15	78	17	54	70	3	1	24	1.13
26675342--26675398	17	3.3	18	76	18	66	70	3	1	24	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26678824--26678885	6	10.8	6	71	15	51	41	1	3	53	1.27
26678824--26678885	17	3.7	16	79	14	63	41	1	3	53	1.27
26678834--26678892	27	2.2	27	84	0	73	44	3	1	50	1.28
26679594--26679643	21	2.4	21	89	0	73	54	2	4	40	1.31
26679617--26679651	18	1.9	18	94	0	61	42	0	11	45	1.40
26679596--26679661	21	3.3	20	77	14	57	46	1	9	42	1.44
26680867--26681349	58	8.3	58	84	3	596	31	27	4	36	1.76
26680866--26681355	117	4.2	118	85	3	609	31	28	4	36	1.76
26686481--26686548	5	13.2	5	81	6	82	36	2	19	41	1.66
26686541--26686614	22	3.4	22	77	3	60	29	4	20	45	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144