genome.fa.s7.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  123  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29234389--29234450	31	2.1	29	84	6	79	37	3	11	48	1.55
29234631--29234700	29	2.4	30	85	7	90	50	15	4	30	1.64
29238781--29239021	121	2.0	122	92	0	403	30	13	18	37	1.90
29239232--29239261	15	2.0	15	100	0	60	60	13	6	20	1.55
29240602--29240647	22	2.0	22	84	16	58	73	4	0	21	1.00
29240934--29240989	22	2.5	23	77	8	62	53	0	3	42	1.18
29240959--29241028	31	2.3	32	79	16	78	45	1	7	45	1.39
29241862--29241916	25	2.2	25	96	0	101	58	1	0	40	1.09
29247341--29247408	4	16.8	4	75	3	55	26	1	5	66	1.23
29247475--29247583	55	2.0	55	85	3	148	33	22	13	31	1.93
29250958--29251038	17	4.7	17	86	7	110	53	2	0	44	1.14
29250952--29251044	6	16.0	6	77	10	86	51	2	0	46	1.13
29250988--29251073	41	2.1	41	91	0	136	55	1	2	40	1.20
29251011--29251076	12	5.1	12	69	16	51	56	1	3	39	1.24
29250994--29251085	41	2.2	41	84	0	112	55	2	2	40	1.24
29251005--29251097	24	3.7	24	75	19	82	54	3	2	39	1.28
29251854--29251888	18	1.9	18	100	0	70	57	17	8	17	1.64
29253581--29253741	29	5.5	30	65	22	92	32	29	4	33	1.79
29253550--29253768	59	3.7	59	86	0	314	32	30	4	32	1.77
29253550--29253768	118	1.9	117	91	2	359	32	30	4	32	1.77
29255711--29255739	5	5.8	5	100	0	58	79	0	0	20	0.74
29271912--29271958	24	2.0	23	88	8	69	36	0	0	63	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29288245--29288280	18	2.0	18	88	0	54	25	8	16	50	1.73
29294153--29294228	23	3.3	23	84	0	107	28	25	18	27	1.98
29296723--29296757	3	11.3	3	93	6	61	34	31	0	34	1.58
29297098--29297137	2	20.0	2	100	0	80	0	50	0	50	1.00
29300033--29300092	22	2.8	21	76	16	68	40	13	1	45	1.53
29303013--29303073	19	3.1	19	77	13	52	65	1	1	31	1.12
29304674--29304729	27	2.0	28	82	3	69	55	14	7	23	1.63
29305089--29305149	16	3.8	16	72	10	52	39	4	1	54	1.32
29306815--29306868	21	2.6	21	82	5	56	38	3	7	50	1.48
29306832--29306875	21	2.2	20	88	8	63	38	2	6	52	1.41
29313349--29313408	28	2.1	28	90	0	93	26	11	31	30	1.92
29313390--29313705	59	5.4	59	86	2	429	34	3	29	32	1.75
29313395--29313705	30	10.6	29	69	23	163	34	3	28	33	1.73
29313390--29313705	118	2.7	119	89	2	485	34	3	29	32	1.75
29313418--29313628	29	7.2	29	69	20	143	32	3	31	32	1.74
29314415--29314461	15	3.3	14	82	11	51	6	17	2	74	1.12
29314416--29314448	15	2.2	15	94	0	57	3	15	0	81	0.80
29315590--29315648	6	9.8	6	73	14	50	54	1	5	38	1.33
29315606--29315632	14	1.9	14	100	0	54	51	0	11	37	1.37
29316919--29317277	177	2.0	181	94	2	636	33	11	12	41	1.80
29318025--29318060	18	2.0	18	89	10	56	33	11	11	44	1.75
29319144--29319190	17	2.7	17	78	15	51	55	23	4	17	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29320729--29320777	19	2.5	19	83	6	53	34	0	8	57	1.29
29323110--29323136	2	13.5	2	100	0	54	0	51	0	48	1.00
29332027--29332101	24	3.1	24	94	0	123	56	9	10	24	1.63
29335113--29335175	24	2.6	24	84	0	81	47	7	15	28	1.74
29349663--29349748	25	3.5	25	85	3	120	61	3	3	31	1.29
29360270--29360376	53	2.0	53	100	0	214	22	9	11	57	1.62
29380124--29380154	10	3.0	10	95	4	53	0	9	48	41	1.36
29382444--29382481	18	2.2	17	86	13	51	52	5	7	34	1.53
29383190--29383268	9	8.3	10	68	20	62	50	1	0	48	1.08
29383190--29383269	31	2.8	29	87	9	112	50	1	0	48	1.08
29383192--29383301	31	3.8	28	77	18	102	51	0	0	46	1.13
29383593--29383629	18	2.1	18	89	0	56	40	21	24	13	1.89
29383989--29384108	58	2.1	58	93	0	204	49	18	0	32	1.48
29385352--29385401	9	5.4	9	73	21	50	50	0	0	50	1.00
29385327--29385403	28	2.6	29	89	8	111	45	2	0	51	1.14
29387104--29387159	23	2.4	23	85	5	69	7	28	23	41	1.80
29387147--29387210	25	2.6	25	97	0	119	12	37	18	31	1.88
29397552--29397627	19	4.0	20	72	8	59	53	7	2	35	1.44
29406464--29406509	23	2.0	23	95	0	83	50	21	13	15	1.78
29419044--29419082	15	2.4	16	87	8	53	35	0	0	64	0.94
29425253--29425278	7	3.7	7	100	0	52	42	15	11	30	1.82
29430481--29430518	18	2.1	19	90	5	60	26	5	0	68	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29431536--29431576	14	3.2	13	77	16	50	58	2	0	39	1.11
29432647--29432689	10	4.6	9	85	5	59	62	4	0	32	1.15
29432647--29432689	19	2.3	19	88	8	61	62	4	0	32	1.15
29443560--29443605	20	2.3	20	85	10	60	43	17	8	30	1.79
29447832--29447872	3	13.7	3	100	0	82	31	0	0	68	0.90
29448021--29448092	34	2.1	34	89	0	108	47	13	12	26	1.79
29460418--29460443	3	8.7	3	100	0	52	65	0	34	0	0.93
29460549--29460588	20	2.0	20	85	9	55	12	15	5	67	1.38
29460504--29460633	63	2.1	63	100	0	260	12	16	10	60	1.59
29473786--29473877	41	2.2	41	98	0	175	30	26	4	39	1.75
29474017--29474082	4	16.5	4	96	0	123	27	0	22	50	1.50
29475831--29475934	37	2.7	38	77	5	111	30	26	20	22	1.98
29476795--29476853	11	4.9	12	76	13	50	52	1	0	45	1.10
29477153--29477264	54	2.1	54	89	0	170	29	16	12	41	1.86
29485644--29485706	31	2.0	31	100	0	126	42	9	3	44	1.52
29494176--29494219	21	2.0	22	86	4	63	45	0	2	52	1.13
29494416--29494466	23	2.2	23	85	0	66	52	1	1	43	1.23
29507950--29507994	3	14.7	3	95	4	81	66	0	0	33	0.92
29511012--29511051	20	2.0	20	95	0	71	42	10	0	47	1.37
29512265--29512314	24	2.0	25	84	7	66	50	4	22	24	1.66
29512855--29512883	2	14.5	2	100	0	58	48	0	51	0	1.00
29519162--29519218	9	6.0	9	75	17	53	35	1	0	63	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29519165--29519214	10	5.0	10	83	9	57	36	2	0	62	1.07
29519613--29519668	29	1.9	29	88	0	85	67	1	0	30	1.01
29529171--29529317	64	2.3	64	81	5	181	21	25	17	34	1.96
29529876--29529921	23	2.0	23	83	8	58	54	13	13	19	1.71
29530997--29531058	14	4.6	14	74	7	58	40	40	6	12	1.69
29553230--29553255	12	2.2	12	100	0	52	53	38	0	7	1.30
29561536--29561585	16	3.1	16	76	2	55	66	0	0	34	0.92
29570315--29570379	29	2.2	30	83	5	89	61	3	0	35	1.12
29570924--29570958	3	11.7	3	100	0	70	65	0	34	0	0.93
29573453--29573868	138	3.0	138	97	0	771	26	26	16	31	1.96
29574700--29574724	3	8.3	3	100	0	50	32	0	36	32	1.58
29578115--29578315	95	2.1	95	95	1	359	25	16	24	32	1.96
29578262--29578317	22	2.5	22	88	0	76	30	16	26	26	1.96
29578141--29578338	95	2.1	94	89	3	301	27	17	22	32	1.96
29604335--29604391	30	1.9	30	88	0	87	33	14	14	38	1.85
29619217--29619266	26	2.0	25	92	4	82	66	4	12	18	1.39
29623337--29623421	29	2.9	29	100	0	170	51	9	14	24	1.71
29633415--29633613	92	2.1	92	88	5	285	36	9	27	27	1.87
29637913--29637951	14	2.7	14	81	18	53	58	12	15	12	1.62
29642136--29642178	22	2.0	21	86	4	59	20	4	6	67	1.33
29646591--29646641	23	2.3	21	80	6	57	39	1	3	54	1.30
29648856--29648895	3	13.3	3	89	0	53	27	0	7	65	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29691816--29691893	29	2.9	27	73	14	72	33	2	2	61	1.23
29696333--29696376	21	2.2	20	84	11	56	65	6	25	2	1.28
29700084--29700127	21	2.1	20	84	16	54	11	22	13	52	1.72
29715181--29715208	5	5.6	5	100	0	56	0	0	57	42	0.99
29715624--29715674	24	2.2	21	83	13	57	66	1	1	29	1.13
29718180--29718264	43	2.0	44	88	2	127	44	8	10	36	1.69
29722940--29722971	2	16.0	2	100	0	64	50	0	50	0	1.00
29727892--29727946	27	2.0	26	83	13	67	41	1	5	50	1.36
29728467--29728518	16	3.4	16	76	10	54	55	1	0	42	1.10
29728479--29728536	29	2.0	30	89	3	91	53	5	1	39	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144