genome.fa.s7.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  127  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31062725--31062770	2	23.0	2	100	0	92	50	0	0	50	1.00
31065976--31066065	23	3.8	23	74	11	92	42	20	23	14	1.88
31065987--31066091	48	2.2	49	84	8	135	41	19	21	17	1.90
31065981--31066094	23	4.8	24	75	18	89	43	20	20	15	1.87
31068161--31068203	22	2.0	21	86	4	59	30	4	0	65	1.13
31072233--31072269	14	2.7	14	91	4	58	37	5	0	56	1.22
31072736--31072807	36	2.0	36	86	5	101	48	0	1	50	1.09
31076069--31076101	1	33.0	1	100	0	66	0	0	100	0	0.00
31080027--31080170	72	2.0	72	98	0	279	31	29	13	24	1.94
31081767--31081797	2	16.0	2	93	6	55	0	48	0	51	1.00
31081767--31081796	15	2.0	15	100	0	60	0	46	0	53	1.00
31088935--31088966	3	10.7	3	93	0	55	37	0	31	31	1.58
31100314--31100348	18	1.9	18	88	11	54	22	2	0	74	0.95
31100688--31100712	2	12.5	2	100	0	50	52	0	0	48	1.00
31105624--31105651	5	5.6	5	100	0	56	0	17	0	82	0.68
31135133--31135389	129	2.0	129	89	1	399	21	17	26	34	1.96
31139160--31139291	39	3.4	39	88	0	201	15	19	21	42	1.89
31143426--31143450	5	5.0	5	100	0	50	0	0	60	40	0.97
31145564--31145589	2	13.0	2	100	0	52	50	0	0	50	1.00
31153416--31153445	15	2.1	15	93	6	53	50	0	6	43	1.28
31158785--31158845	31	2.0	31	90	3	97	42	9	22	24	1.84
31179651--31179709	26	2.3	26	88	5	86	45	1	1	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31183167--31183236	31	2.4	30	84	13	94	45	4	2	47	1.37
31183186--31183237	17	3.2	17	68	15	56	51	1	1	44	1.23
31183475--31183525	18	2.8	18	74	14	50	37	0	1	60	1.08
31184164--31184212	21	2.2	22	82	13	57	65	4	2	28	1.22
31192734--31192780	9	5.2	9	81	0	58	8	44	12	34	1.73
31192732--31192795	27	2.4	27	94	0	110	9	48	9	32	1.67
31194024--31194074	15	3.4	15	75	25	54	58	1	27	11	1.44
31202223--31202261	18	2.2	17	90	4	60	64	7	0	28	1.21
31204864--31205092	41	5.6	41	83	2	219	23	24	24	27	2.00
31204879--31205111	122	1.9	123	83	2	308	23	24	25	26	2.00
31215068--31215124	15	3.5	15	73	17	51	47	1	1	49	1.22
31218545--31218675	68	1.9	68	95	0	235	36	8	19	35	1.82
31222923--31223164	66	3.7	65	72	5	173	13	28	16	40	1.87
31222923--31223340	132	3.2	132	83	3	464	12	26	18	41	1.87
31222981--31223368	66	5.9	66	70	11	231	14	26	19	39	1.90
31222992--31223364	132	2.8	131	86	2	478	14	26	19	39	1.90
31224831--31224884	27	2.0	26	82	10	65	48	0	3	48	1.19
31225149--31225200	14	4.1	12	83	16	61	63	0	0	36	0.95
31225147--31225200	25	2.2	25	87	9	76	64	0	0	35	0.94
31225147--31225188	11	3.6	11	80	20	50	64	0	0	35	0.94
31225874--31226171	151	2.0	154	88	2	449	40	11	8	39	1.72
31230017--31230080	13	4.9	13	76	14	69	50	1	4	43	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31230017--31230091	26	2.8	26	76	13	73	49	1	5	44	1.33
31230464--31230507	18	2.5	17	85	3	61	38	4	6	50	1.50
31234331--31234374	20	2.2	20	83	0	52	43	4	6	45	1.51
31241126--31241311	62	3.0	61	82	10	225	29	20	14	35	1.93
31241573--31241632	31	1.9	31	86	0	84	21	10	23	45	1.82
31244468--31244551	17	4.9	17	75	2	80	36	3	4	54	1.39
31244527--31244573	6	8.0	6	78	4	51	51	0	2	46	1.13
31244687--31244747	26	2.3	27	80	2	70	29	42	9	18	1.82
31247616--31247664	12	3.8	12	75	19	53	51	0	8	40	1.32
31247746--31247787	22	1.9	22	85	9	59	50	4	0	45	1.23
31247881--31248036	45	3.5	46	69	20	125	37	5	4	51	1.46
31247796--31248168	89	4.3	89	84	9	452	39	5	3	51	1.44
31247796--31248168	174	2.2	173	88	4	556	39	5	3	51	1.44
31248270--31248321	22	2.4	22	78	18	63	40	28	5	25	1.78
31248330--31248364	10	3.5	10	84	0	52	14	34	28	22	1.93
31248526--31248725	61	3.3	60	83	4	265	34	18	21	26	1.96
31248634--31248837	101	2.0	102	85	0	275	33	16	19	30	1.94
31249183--31249242	31	2.0	31	83	3	77	35	8	11	45	1.71
31253001--31253039	13	3.0	13	96	0	69	25	30	43	0	1.55
31253088--31253112	13	1.9	13	100	0	50	24	24	44	8	1.80
31255078--31255329	131	1.9	132	83	6	323	41	4	11	42	1.61
31259704--31259754	25	2.0	26	84	3	68	49	1	0	49	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31263937--31263965	4	7.2	4	100	0	58	51	0	0	48	1.00
31265099--31265141	21	2.0	22	86	4	61	60	0	0	39	0.97
31271823--31271946	22	5.4	22	79	12	133	12	21	24	41	1.87
31274173--31274251	35	2.3	35	88	0	113	34	16	20	29	1.94
31277498--31277549	27	1.9	26	81	14	61	17	9	11	61	1.55
31285412--31285437	2	13.0	2	100	0	52	50	0	0	50	1.00
31289029--31289072	23	1.9	23	90	0	70	68	4	13	13	1.36
31293473--31293537	33	2.0	33	85	8	89	50	4	3	41	1.38
31304234--31304286	18	2.8	20	82	8	74	75	16	1	5	1.08
31304243--31304303	21	3.0	20	80	4	59	72	18	3	6	1.21
31314325--31314367	3	14.3	3	100	0	86	32	0	0	67	0.91
31319198--31319281	30	2.8	30	74	15	91	47	10	11	29	1.74
31319558--31319586	10	3.0	10	95	5	51	31	20	27	20	1.98
31332792--31332926	41	3.3	41	91	0	198	22	14	18	44	1.86
31345765--31345810	23	1.9	25	83	16	62	58	8	13	19	1.60
31346974--31347030	30	1.9	30	85	0	78	29	1	1	66	1.12
31356182--31356299	23	5.0	23	82	11	150	11	25	22	39	1.88
31356182--31356299	48	2.5	46	86	8	166	11	25	22	39	1.88
31356264--31356338	39	1.9	39	91	0	123	12	22	21	44	1.85
31356298--31356391	23	4.0	23	75	16	86	11	25	19	43	1.84
31359646--31359749	37	2.7	38	76	5	93	32	26	18	22	1.97
31359854--31359891	12	3.1	13	81	14	53	26	28	0	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31360041--31360086	22	2.1	22	95	0	83	32	15	4	47	1.65
31360046--31360097	22	2.4	22	80	6	61	34	17	3	44	1.67
31361201--31367869	741	9.0	741	99	0	13313	31	18	14	35	1.91
31373493--31373522	12	2.5	12	94	0	51	0	6	46	46	1.29
31379400--31379448	22	2.3	20	80	10	53	55	2	2	40	1.23
31385424--31385467	17	2.7	15	80	19	52	13	29	15	40	1.86
31396232--31396450	113	1.9	113	97	0	411	40	3	17	39	1.66
31400743--31400902	84	1.9	83	81	7	189	43	0	7	48	1.35
31401285--31401314	3	10.0	3	100	0	60	33	0	0	66	0.92
31401646--31401685	19	2.1	19	86	9	55	37	5	0	57	1.21
31416841--31416889	19	2.5	20	93	6	82	20	4	0	75	0.96
31417206--31417262	24	2.4	24	79	5	62	50	15	24	8	1.72
31418307--31418357	21	2.4	21	90	0	75	54	5	29	9	1.56
31423018--31423061	16	2.7	15	80	19	52	70	4	2	22	1.17
31425072--31425130	31	1.9	30	93	3	100	30	0	5	64	1.15
31425108--31425145	9	4.3	9	83	3	51	26	0	0	73	0.83
31425213--31425299	43	2.0	43	97	0	165	36	8	13	41	1.74
31432922--31432947	5	5.2	5	100	0	52	19	0	42	38	1.51
31433295--31433348	23	2.3	23	90	0	81	38	24	27	9	1.86
31434291--31434316	7	3.7	7	100	0	52	46	11	11	30	1.76
31435088--31435135	11	4.4	11	79	10	53	33	27	0	39	1.57
31435096--31435143	23	2.1	23	92	3	80	35	25	0	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31435107--31435158	12	4.4	12	75	4	61	30	25	1	42	1.66
31435088--31435158	33	2.1	34	86	5	99	30	26	1	40	1.65
31435321--31435365	10	4.2	11	76	23	51	26	0	0	73	0.84
31435321--31435365	21	2.1	22	84	12	58	26	0	0	73	0.84
31437466--31437513	20	2.4	19	80	16	53	54	10	0	35	1.35
31445189--31445269	29	2.8	29	84	0	108	51	7	9	30	1.62
31455445--31455583	29	4.8	29	65	20	76	34	3	28	33	1.75
31455445--31455587	58	2.4	58	83	4	207	33	3	29	33	1.75
31455551--31455711	30	5.4	30	73	14	120	32	3	23	40	1.70
31457544--31457614	33	2.2	32	82	2	79	52	5	1	40	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144