genome.fa.s7.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  143  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38105207--38105236	14	2.1	14	93	0	51	13	3	20	63	1.43
38108554--38108786	117	2.0	116	84	3	306	47	5	6	40	1.51
38122024--38122056	9	3.6	9	95	4	57	33	12	9	45	1.73
38122490--38122581	39	2.4	38	83	8	107	22	4	14	58	1.53
38123095--38123135	13	3.2	13	96	0	73	51	0	0	48	1.00
38123770--38123828	31	1.9	31	86	3	84	49	5	6	38	1.52
38130990--38131029	20	2.0	20	85	9	55	30	7	2	60	1.38
38133274--38133307	2	17.0	2	100	0	68	50	0	50	0	1.00
38133689--38133718	16	1.9	15	93	6	51	40	10	23	26	1.86
38140870--38140898	2	14.5	2	100	0	58	48	0	0	51	1.00
38141691--38141754	31	2.1	31	84	0	83	32	21	17	28	1.96
38144118--38144142	12	2.1	12	100	0	50	32	0	8	60	1.26
38144448--38144479	3	10.7	3	100	0	64	0	31	0	68	0.90
38146575--38146610	14	2.6	14	90	0	54	30	5	5	58	1.44
38146749--38146778	14	2.1	15	93	6	53	40	20	3	36	1.69
38147611--38147683	30	2.4	31	90	2	112	43	6	5	43	1.54
38148852--38148940	45	2.0	45	93	0	151	32	8	16	41	1.80
38150401--38150438	14	2.7	15	88	8	53	65	18	0	15	1.27
38152424--38152747	130	2.5	128	84	6	409	37	9	15	37	1.81
38152838--38152997	83	1.9	83	81	5	189	36	6	15	40	1.74
38162024--38162075	25	2.1	25	81	0	59	63	3	5	26	1.34
38162108--38162169	2	31.0	2	96	0	115	48	0	1	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38165871--38165936	29	2.2	29	78	2	69	45	12	6	36	1.66
38183418--38183443	3	8.7	3	100	0	52	65	0	0	34	0.93
38184690--38184724	15	2.4	14	86	13	52	82	5	2	8	0.91
38185113--38185173	32	1.9	32	86	6	88	52	0	8	39	1.31
38193087--38193419	187	1.8	178	84	7	452	34	16	16	31	1.92
38198817--38198875	29	2.0	30	86	3	84	32	6	13	47	1.69
38203587--38203662	35	2.2	35	83	9	93	44	3	2	48	1.35
38224638--38224676	21	2.0	21	90	10	64	46	5	5	43	1.48
38231687--38231935	130	2.0	123	84	7	322	42	14	15	28	1.86
38245444--38245489	24	2.0	23	82	4	56	54	17	17	10	1.70
38247170--38247202	16	2.1	16	94	0	57	39	9	3	48	1.50
38248885--38248953	24	2.9	24	89	4	104	53	7	11	27	1.63
38262105--38262184	31	2.6	30	79	12	83	40	8	11	40	1.72
38262601--38262743	73	2.0	73	100	0	286	47	7	19	25	1.76
38262712--38262791	37	2.2	37	100	0	160	46	7	16	30	1.74
38268521--38268545	2	12.5	2	100	0	50	48	0	0	52	1.00
38270667--38270730	27	2.4	27	97	0	119	17	23	45	14	1.84
38270783--38270867	33	2.6	33	78	0	98	12	10	57	18	1.64
38317062--38317145	42	2.0	42	88	0	123	20	11	23	44	1.85
38317763--38317860	48	2.0	48	90	3	153	22	22	8	46	1.77
38319089--38319128	16	2.4	17	88	12	57	40	0	7	52	1.30
38321190--38321298	50	2.2	50	91	1	173	46	0	22	30	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38323217--38323320	31	3.4	31	77	7	115	38	18	18	25	1.93
38323217--38323338	62	2.0	60	81	9	140	36	18	18	25	1.94
38333814--38333877	30	2.1	32	85	5	87	40	15	4	39	1.68
38334420--38334481	31	2.0	32	84	9	83	37	4	4	53	1.44
38334399--38334509	56	2.0	54	81	6	125	36	4	7	51	1.50
38340889--38340934	22	2.1	22	87	0	65	30	8	8	52	1.62
38348763--38348796	16	2.2	15	89	5	50	67	2	0	29	1.05
38353009--38353042	17	2.0	17	88	0	50	35	0	0	64	0.94
38355004--38355040	4	9.2	4	87	0	56	24	5	24	45	1.74
38356593--38356617	13	1.9	13	100	0	50	40	0	0	60	0.97
38367498--38367531	7	4.7	7	96	3	59	73	0	0	26	0.83
38367495--38367573	31	2.6	31	84	6	90	68	1	0	30	0.98
38367498--38367620	8	15.0	8	72	17	58	69	0	1	27	1.03
38367560--38367619	18	3.4	17	76	17	52	75	0	3	21	0.95
38368581--38368638	22	2.7	22	86	2	82	53	5	6	34	1.50
38385894--38385933	21	2.0	20	85	5	53	52	2	5	40	1.37
38388047--38388080	17	2.1	16	88	5	50	55	8	0	35	1.31
38397143--38397176	14	2.4	15	85	14	54	20	2	0	76	0.92
38397162--38397213	9	5.6	9	77	11	52	26	1	1	69	1.10
38400625--38400670	22	2.2	21	84	7	58	50	8	6	34	1.59
38401261--38401315	21	2.6	21	77	11	58	45	1	5	47	1.36
38401964--38402019	21	2.8	21	83	5	71	41	1	3	53	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38405470--38405507	17	2.2	18	86	13	53	60	5	0	34	1.19
38408510--38408606	31	3.2	30	76	2	106	39	9	7	44	1.64
38408492--38408603	31	3.5	32	72	11	97	37	8	8	45	1.65
38409216--38409253	15	2.4	16	91	8	60	52	5	5	36	1.47
38417749--38418430	252	2.8	247	80	9	722	43	17	9	29	1.81
38437110--38437143	13	2.5	13	85	4	50	26	0	2	70	1.01
38437771--38437822	26	1.9	28	84	7	72	50	7	1	40	1.42
38442153--38442203	25	2.0	25	81	7	59	35	1	1	60	1.19
38442520--38442550	16	1.9	16	93	0	53	29	0	3	67	1.06
38442623--38442668	15	2.9	16	81	15	51	50	4	0	45	1.21
38451023--38451109	30	2.9	30	85	0	120	42	24	27	5	1.77
38467781--38467816	4	9.0	4	100	0	72	25	0	50	25	1.50
38473580--38473664	18	4.8	16	68	28	57	63	5	1	29	1.25
38473590--38473677	18	4.8	18	70	18	74	64	5	1	28	1.23
38473581--38473670	24	3.5	24	68	19	72	63	5	1	30	1.24
38473585--38473682	10	9.4	10	69	23	51	62	6	1	30	1.26
38473581--38473692	55	2.0	55	100	0	224	61	7	1	29	1.33
38477211--38477285	33	2.3	33	100	0	150	28	36	17	18	1.94
38477232--38477287	18	3.3	18	65	14	55	28	37	16	17	1.91
38477525--38477600	32	2.5	30	80	14	84	42	0	0	57	0.98
38477546--38477633	34	2.7	34	81	8	85	44	1	1	53	1.15
38484514--38484573	2	30.0	2	96	0	111	0	48	1	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38485728--38485810	44	1.9	43	82	2	103	30	6	24	39	1.79
38492694--38492824	57	2.3	58	90	2	201	32	11	3	51	1.56
38495077--38495117	20	2.0	20	85	9	55	70	14	4	9	1.30
38500893--38500932	15	2.7	15	88	0	53	65	5	0	30	1.14
38529670--38529716	24	1.9	25	82	4	60	34	4	6	55	1.45
38549899--38549925	2	13.5	2	100	0	54	51	0	0	48	1.00
38550402--38550437	18	2.1	18	89	5	56	41	0	25	33	1.55
38561085--38561126	19	2.2	19	83	8	50	38	0	4	57	1.20
38563920--38563948	14	2.1	14	100	0	58	34	0	13	51	1.42
38574322--38574387	31	2.2	31	86	2	89	43	6	12	37	1.67
38610217--38610249	17	2.0	17	88	5	50	51	0	0	48	1.00
38621968--38622084	60	1.9	61	87	1	173	35	16	11	36	1.84
38628200--38628764	116	4.9	115	77	5	442	29	22	15	31	1.95
38631764--38631833	27	2.5	29	79	11	83	60	0	7	32	1.24
38644080--38644159	28	2.9	28	74	12	83	46	27	5	21	1.72
38646183--38646254	30	2.4	30	84	9	85	38	4	8	48	1.53
38663534--38663605	26	2.8	26	97	0	135	44	11	8	36	1.70
38663934--38664315	60	6.3	61	82	6	415	26	21	17	34	1.95
38663934--38664315	123	3.2	120	83	6	416	26	21	17	34	1.95
38663880--38664315	60	7.3	60	81	8	401	27	21	17	34	1.95
38665183--38665252	30	2.3	30	85	0	86	65	2	7	24	1.31
38665680--38665874	62	3.3	59	77	13	168	34	15	21	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38699391--38699491	38	2.6	40	71	10	100	21	19	28	29	1.98
38723483--38723566	40	2.1	40	95	0	150	48	3	5	41	1.45
38724212--38724259	24	2.0	24	100	0	96	29	20	4	45	1.70
38725094--38725140	22	2.2	22	84	3	60	6	0	38	55	1.26
38725162--38725433	7	37.7	7	76	8	100	13	2	42	41	1.58
38725323--38725392	36	1.9	36	88	0	104	15	0	35	48	1.46
38725236--38725383	43	3.4	43	76	6	104	10	0	44	43	1.44
38725374--38725453	35	2.2	36	86	8	117	10	12	46	31	1.75
38725405--38725468	30	2.2	30	86	5	87	6	12	50	31	1.65
38725429--38725484	7	7.7	7	78	7	58	1	12	53	32	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144