genome.fa.s7.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  99  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23204158--23204252	38	2.5	38	87	0	136	22	22	17	37	1.94
23206422--23206542	58	2.1	58	90	3	190	25	14	19	39	1.90
23206972--23207022	21	2.6	19	78	9	57	31	5	11	50	1.62
23216757--23216793	12	2.8	14	80	16	51	64	0	8	27	1.21
23216768--23216793	12	2.2	12	100	0	52	69	0	7	23	1.14
23220325--23220374	17	2.7	19	82	17	61	0	18	0	82	0.68
23220325--23220374	10	4.8	10	80	7	55	0	18	0	82	0.68
23220331--23220369	21	1.9	20	89	5	60	0	17	0	82	0.68
23221126--23221166	21	2.0	21	90	9	66	2	24	9	63	1.37
23221121--23221166	21	2.3	19	80	20	58	2	26	8	63	1.35
23223846--23223881	15	2.5	15	91	8	58	19	27	8	44	1.79
23238481--23238514	16	2.2	16	89	5	52	29	2	5	61	1.34
23239369--23239398	15	2.0	15	93	0	51	70	0	30	0	0.88
23239361--23239402	19	2.2	20	86	4	59	66	2	30	0	1.04
23242729--23242772	23	1.9	23	85	0	61	45	6	13	34	1.70
23247539--23247616	28	3.0	25	79	17	88	41	0	2	56	1.13
23250229--23250254	12	2.2	12	100	0	52	15	7	11	65	1.46
23255547--23255660	30	3.9	29	71	10	97	36	6	22	34	1.79
23255638--23255780	28	5.0	30	79	16	92	31	2	28	37	1.69
23255626--23255802	58	3.1	58	80	13	156	31	1	27	40	1.66
23255671--23255821	29	5.1	28	81	13	155	34	0	25	39	1.61
23255668--23255842	29	6.0	28	78	14	142	34	1	25	38	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23255671--23255839	87	1.9	87	79	12	186	35	1	24	39	1.63
23257418--23257480	6	11.2	6	81	10	71	57	1	0	41	1.08
23257418--23257480	11	5.6	12	79	11	71	57	1	0	41	1.08
23257418--23257482	17	3.9	17	89	4	105	56	1	0	41	1.08
23257975--23258448	78	6.1	77	81	4	479	25	19	30	24	1.98
23258000--23258439	39	11.3	38	69	13	202	25	18	31	24	1.98
23270485--23270789	29	10.3	29	77	11	153	35	4	25	35	1.76
23272373--23272407	17	2.1	17	94	0	61	57	2	0	40	1.14
23275004--23275053	11	4.5	11	76	0	55	34	2	14	50	1.54
23275003--23275053	22	2.3	22	89	0	75	33	1	15	49	1.56
23278227--23278259	9	3.8	9	84	8	50	21	0	0	78	0.75
23278228--23278258	8	3.8	8	95	4	53	22	0	0	77	0.77
23280843--23280880	9	4.2	9	93	0	58	36	10	10	42	1.74
23288472--23288554	26	3.2	26	77	0	76	18	28	24	28	1.98
23288447--23288574	52	2.5	52	79	7	134	15	27	25	32	1.96
23288498--23288568	26	2.7	26	80	0	79	15	30	23	29	1.95
23289248--23289277	14	2.1	15	93	6	53	66	3	0	30	1.07
23289520--23289555	13	2.6	14	86	4	56	61	2	25	11	1.43
23291845--23291888	22	2.0	22	90	0	70	36	13	18	31	1.90
23293948--23293983	13	2.6	14	86	4	56	61	2	25	11	1.43
23297177--23297209	17	2.0	17	88	5	50	36	24	0	39	1.56
23297519--23297556	19	2.0	19	100	0	76	31	21	10	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23298262--23298311	26	1.9	26	95	0	91	38	0	38	24	1.56
23311858--23311914	29	1.9	29	89	3	87	42	14	8	35	1.76
23311826--23311914	31	3.0	30	78	4	90	42	13	8	34	1.76
23311872--23311939	31	2.4	27	76	13	73	41	13	10	35	1.78
23314599--23314670	25	2.8	26	77	12	87	25	19	22	33	1.97
23318017--23318066	24	2.1	24	100	0	100	32	8	24	36	1.84
23320533--23320648	25	4.6	25	83	2	126	25	18	25	31	1.97
23321500--23321552	21	2.5	21	79	14	65	32	7	24	35	1.84
23324347--23324400	28	1.9	27	85	14	74	66	12	1	18	1.33
23324381--23324412	10	3.4	10	91	8	50	75	0	0	25	0.81
23332949--23332973	2	12.5	2	100	0	50	52	0	48	0	1.00
23338627--23338777	29	5.2	29	75	6	135	33	3	27	35	1.76
23338713--23339071	30	12.1	30	78	8	281	39	2	24	33	1.69
23338571--23338970	58	6.8	60	74	11	215	35	3	26	35	1.74
23338713--23338981	89	3.0	87	81	7	260	37	2	24	34	1.70
23338652--23339086	29	14.8	28	76	10	241	37	2	25	34	1.71
23340334--23340365	14	2.3	14	94	0	55	9	18	50	21	1.75
23340531--23340641	6	19.5	6	72	12	65	59	3	0	36	1.21
23340536--23340636	17	6.1	17	82	3	125	59	3	0	35	1.23
23341098--23341629	39	13.7	38	70	16	261	25	19	31	24	1.98
23341215--23341590	117	3.2	116	80	4	402	26	20	30	23	1.99
23341137--23341570	233	1.9	233	84	3	588	25	20	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23341097--23341652	78	7.1	77	78	6	564	25	20	30	23	1.98
23341097--23341707	194	3.1	193	77	8	589	26	19	30	23	1.98
23341137--23341709	39	14.7	39	71	9	224	26	20	30	23	1.98
23353734--23354101	30	12.5	29	76	11	245	37	1	22	37	1.64
23353734--23354071	58	5.8	56	76	12	240	36	1	23	38	1.64
23353841--23354137	30	10.0	29	79	10	253	39	1	22	36	1.63
23353847--23354133	90	3.2	89	80	8	280	39	1	22	36	1.63
23355006--23355038	13	2.5	13	95	0	57	54	12	12	21	1.69
23355520--23355562	22	2.0	22	90	0	68	18	6	20	53	1.67
23355521--23355569	22	2.2	22	85	0	62	24	6	16	53	1.66
23355569--23355639	17	4.3	16	77	10	72	56	5	1	36	1.32
23355569--23355639	34	2.2	32	89	5	106	56	5	1	36	1.32
23358935--23358983	24	2.0	26	88	8	75	42	26	12	18	1.85
23358972--23359104	24	5.6	24	83	5	171	27	22	24	25	2.00
23359086--23359157	26	2.7	27	82	4	92	37	22	16	23	1.94
23360876--23360909	15	2.3	15	94	0	59	23	26	11	38	1.89
23364386--23364501	54	2.1	54	90	4	180	50	6	9	34	1.60
23365384--23365428	22	2.0	22	86	0	63	60	2	2	35	1.22
23373722--23374338	251	2.4	253	79	9	680	41	8	12	37	1.73
23374945--23375174	41	5.6	41	89	0	325	31	19	31	17	1.95
23375159--23375191	17	1.9	17	93	0	57	24	21	33	21	1.97
23375117--23375232	58	2.0	58	89	0	178	28	18	33	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23375175--23375273	41	2.4	41	87	0	144	30	19	32	18	1.95
23375076--23375364	99	2.9	99	96	0	524	30	19	32	17	1.95
23375258--23375290	17	1.9	17	93	0	57	24	21	33	21	1.97
23375216--23375325	58	1.9	58	88	0	166	30	19	32	17	1.94
23375274--23375431	41	3.9	41	85	0	208	31	20	31	16	1.95
23375275--23375431	82	1.9	82	88	0	233	31	21	31	16	1.95
23380364--23380555	96	2.0	96	82	8	230	35	13	19	30	1.91
23380831--23381142	30	10.5	30	81	6	303	34	1	25	38	1.67
23380831--23381171	119	2.9	119	80	4	357	34	2	25	37	1.68
23380831--23381190	60	6.1	57	77	11	232	33	2	25	38	1.70
23383144--23383190	12	4.1	12	76	17	55	46	2	0	51	1.13
23383149--23383223	6	13.0	6	72	13	68	48	2	1	48	1.24
23383147--23383231	23	3.7	23	76	6	91	45	2	2	49	1.27
23383149--23383244	17	5.6	17	76	6	77	48	2	2	46	1.25
23384834--23385260	43	10.0	43	83	3	513	22	18	27	31	1.97
23384834--23385260	129	3.3	128	88	4	581	22	18	27	31	1.97
23385232--23385286	26	2.1	26	86	0	74	32	16	32	18	1.93
23385263--23385384	42	2.9	42	90	0	190	24	18	25	31	1.98
23396972--23397016	18	2.3	19	81	14	56	57	0	0	42	0.98
23396972--23397012	22	1.9	21	85	5	55	60	0	0	39	0.96
23399625--23399663	15	2.4	16	87	8	53	35	0	0	64	0.94
23399620--23399776	81	1.9	82	80	3	181	43	3	1	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23403942--23404013	27	2.8	27	82	12	80	36	1	0	62	1.04
23404681--23404723	16	2.9	14	75	24	52	27	2	2	67	1.15
23405622--23405664	3	14.3	3	100	0	86	67	0	0	32	0.91
23411189--23411248	30	2.1	29	84	12	79	28	1	3	66	1.17
23411180--23411248	30	2.4	28	81	13	77	28	1	2	66	1.14
23414552--23414597	24	1.9	23	86	8	65	56	6	4	32	1.45
23416477--23416502	13	2.0	13	100	0	52	38	23	23	15	1.92
23416493--23416539	21	2.2	21	88	0	67	23	27	29	19	1.98
23416493--23416539	10	4.5	10	84	7	58	23	27	29	19	1.98
23416576--23416605	15	2.0	15	93	0	51	20	3	33	43	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144