genome.fa.s7.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  124  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29730413--29730506	27	3.4	27	68	23	86	34	19	8	38	1.82
29730408--29730538	57	2.3	57	98	0	253	31	19	9	40	1.82
29730440--29730536	30	3.3	30	67	23	89	30	18	7	43	1.77
29730437--29730525	27	3.2	27	67	24	76	29	16	7	46	1.76
29733222--29733272	20	2.5	21	81	9	61	33	1	1	62	1.17
29733890--29733949	22	2.7	23	84	10	79	66	0	3	30	1.07
29734148--29734185	6	6.3	6	100	0	76	0	68	0	31	0.90
29742296--29742330	6	5.8	6	96	0	61	34	2	14	48	1.58
29742296--29742343	12	3.8	12	84	10	51	37	4	12	45	1.61
29746331--29746368	17	2.2	17	86	9	51	42	0	0	57	0.98
29746526--29746577	25	2.1	25	85	7	70	42	0	3	53	1.19
29755026--29755063	20	2.0	19	85	10	51	42	0	5	52	1.24
29761597--29761632	2	18.0	2	100	0	72	50	0	0	50	1.00
29768474--29768515	22	2.0	21	90	4	66	40	0	4	54	1.21
29769764--29769795	2	16.0	2	100	0	64	50	0	0	50	1.00
29773036--29773089	13	4.2	13	81	9	65	40	0	1	57	1.09
29773034--29773085	26	2.0	26	88	3	77	44	0	1	53	1.11
29775446--29775497	21	2.4	21	87	3	68	9	5	23	61	1.48
29775448--29775506	22	2.7	21	84	5	64	10	5	20	64	1.43
29775489--29775592	12	9.1	12	77	10	56	9	4	19	66	1.39
29775448--29775573	54	2.3	55	83	6	148	10	6	19	64	1.46
29779570--29779601	15	2.1	15	94	5	55	46	3	12	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29783851--29783918	32	2.1	32	94	0	118	13	7	47	32	1.70
29783851--29783904	17	3.3	17	68	19	51	12	5	48	33	1.65
29798951--29799148	27	7.3	27	83	2	209	27	22	12	36	1.91
29798951--29799148	82	2.4	82	84	2	247	27	22	12	36	1.91
29801061--29801117	30	1.9	30	86	10	82	29	10	3	56	1.50
29802167--29802208	22	1.9	22	85	9	59	66	0	0	33	0.92
29814421--29814481	24	2.5	24	86	0	86	29	13	6	50	1.66
29814944--29815072	64	2.0	63	96	1	240	51	19	7	21	1.72
29814956--29815059	35	3.1	35	60	16	85	50	20	7	22	1.73
29815069--29815127	22	2.7	22	86	0	82	72	0	3	23	0.99
29815591--29815625	18	1.9	18	88	11	54	62	2	0	34	1.10
29815662--29815686	3	8.3	3	100	0	50	32	0	0	68	0.90
29826067--29826108	21	2.0	21	90	9	68	76	14	4	4	1.12
29828474--29828661	58	3.2	57	79	6	200	28	11	9	51	1.67
29828798--29828905	57	1.9	56	84	5	146	52	8	13	25	1.68
29828987--29829078	15	6.2	14	71	17	62	34	1	1	63	1.09
29853210--29853281	29	2.5	28	82	8	81	37	0	26	36	1.57
29853233--29853635	59	6.8	59	83	7	430	33	2	30	33	1.72
29853234--29853635	117	3.4	117	85	6	535	33	2	30	33	1.72
29853233--29853635	176	2.3	176	85	6	557	33	2	30	33	1.72
29853586--29853650	30	2.2	31	83	13	91	33	0	30	35	1.58
29853602--29853663	30	2.1	30	84	6	81	33	1	24	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29855512--29855549	12	3.2	12	88	7	60	42	0	0	57	0.98
29855516--29855601	6	14.3	6	68	22	56	50	1	0	48	1.08
29855516--29855548	17	1.9	17	93	0	57	48	0	0	51	1.00
29855561--29855601	18	2.3	18	87	4	66	53	0	0	46	1.00
29855530--29855601	16	4.3	17	74	13	69	50	1	0	48	1.09
29872827--29873303	239	2.0	242	96	1	888	37	15	16	31	1.89
29880230--29880271	20	2.0	21	86	4	59	50	2	14	33	1.56
29886204--29886251	10	4.9	10	74	5	53	25	0	2	72	0.95
29887243--29887357	60	1.9	60	82	10	146	41	17	14	26	1.88
29891684--29891730	20	2.5	20	80	16	55	29	2	2	65	1.15
29895101--29895158	22	2.8	21	76	10	57	58	3	6	31	1.41
29895108--29895169	20	3.0	21	79	9	67	59	3	6	30	1.38
29897817--29897893	30	2.5	30	83	6	84	50	3	0	45	1.20
29897777--29897953	82	2.1	82	80	7	189	48	3	2	45	1.33
29903041--29903092	23	2.3	24	81	15	67	57	1	3	36	1.28
29905406--29905464	24	2.5	24	88	0	91	57	11	5	25	1.54
29924647--29924685	20	2.0	20	85	10	53	66	2	0	30	1.05
29924698--29924739	21	2.0	21	86	4	59	57	0	2	40	1.12
29928509--29928554	20	2.3	20	85	7	58	45	0	8	45	1.34
29932618--29932696	30	2.7	29	75	13	88	50	1	7	40	1.39
29939744--29939778	17	2.1	17	88	0	52	68	2	0	28	1.04
29959040--29959096	26	2.3	25	80	14	64	36	3	1	57	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29959182--29959210	15	2.0	15	93	6	51	68	0	3	27	1.05
29962460--29962489	15	2.0	15	93	0	51	70	0	30	0	0.88
29962581--29962614	13	2.6	13	90	0	59	0	23	0	76	0.79
29963815--29963864	26	1.9	26	84	8	66	26	0	6	68	1.13
29967709--29967747	18	2.2	18	90	0	60	46	30	5	17	1.70
29985926--29986098	96	1.8	96	81	8	219	39	15	14	30	1.87
29986123--29986426	115	2.6	116	87	5	422	42	10	16	30	1.81
29986123--29986479	57	6.2	56	81	10	384	42	10	17	29	1.82
29986118--29986479	172	2.1	172	83	8	445	42	11	17	29	1.83
29986123--29986479	115	3.1	112	82	7	409	42	10	17	29	1.82
29986467--29986655	102	1.8	105	82	4	251	32	12	16	38	1.86
29992606--29992649	14	3.1	14	77	6	52	68	11	0	20	1.20
29992668--29992697	2	15.0	2	92	0	51	53	0	0	46	1.00
29995972--29996021	26	1.9	26	87	0	73	30	0	12	58	1.34
29996024--29996072	24	2.0	24	100	0	98	51	12	12	24	1.73
29999063--29999096	17	2.0	17	94	0	59	52	2	0	44	1.16
29999467--29999504	15	2.6	15	84	15	53	36	0	0	63	0.95
29999471--29999504	15	2.2	16	90	10	54	41	0	0	58	0.98
30000302--30000330	2	14.5	2	100	0	58	51	0	0	48	1.00
30001133--30001429	84	3.6	83	80	9	245	39	6	11	43	1.65
30001203--30001449	84	2.9	84	85	4	311	38	6	11	44	1.66
30023931--30024258	90	3.7	90	87	3	473	38	22	2	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30023928--30024259	30	11.1	30	87	3	418	38	23	2	36	1.67
30026996--30027057	29	2.2	29	83	13	76	29	9	27	33	1.88
30027132--30027299	59	2.8	59	77	10	173	43	2	23	30	1.68
30027212--30027299	30	3.0	30	73	6	90	43	3	23	29	1.70
30027132--30027327	59	3.3	59	77	7	157	42	3	23	30	1.71
30029246--30029322	17	4.8	16	73	7	57	53	6	1	38	1.35
30032119--30032163	22	2.0	22	95	0	81	33	8	24	33	1.86
30032539--30032819	90	3.0	92	72	12	239	49	11	12	25	1.75
30032539--30032991	182	2.5	183	81	6	522	49	11	12	26	1.75
30034237--30034271	2	17.5	2	100	0	70	48	0	0	51	1.00
30039779--30039902	49	2.5	50	85	7	166	24	27	4	44	1.71
30041595--30041652	29	2.0	30	86	3	82	20	34	1	43	1.62
30052356--30052500	75	1.9	75	95	0	263	36	15	16	31	1.91
30056859--30056888	6	5.0	6	100	0	60	16	0	33	50	1.46
30058729--30058841	38	3.2	38	60	25	91	44	6	1	47	1.38
30058735--30058871	69	2.0	69	98	0	265	40	6	2	49	1.44
30077377--30077447	35	2.0	35	86	5	99	53	4	2	39	1.35
30077637--30077689	28	1.9	27	84	3	70	49	0	3	47	1.19
30077697--30077778	37	2.3	35	81	8	85	63	2	3	30	1.24
30102443--30102474	15	2.1	15	100	0	64	18	6	46	28	1.73
30102681--30102764	43	2.0	43	86	9	118	36	2	3	57	1.29
30102663--30102766	43	2.5	41	78	10	111	37	1	3	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30107905--30107948	19	2.3	19	80	0	52	61	2	4	31	1.28
30121572--30121658	33	2.7	33	90	1	131	44	8	6	40	1.61
30123874--30123907	18	1.9	17	88	5	50	55	5	5	32	1.48
30126293--30126372	41	2.0	41	97	0	151	31	26	1	41	1.64
30126221--30126448	115	2.0	114	91	3	370	33	24	4	37	1.77
30128083--30128120	17	2.2	18	90	9	62	13	10	5	71	1.30
30128328--30128511	7	26.3	7	83	10	175	10	34	13	41	1.79
30128313--30128465	21	7.3	21	84	10	197	9	32	13	44	1.76
30128510--30129074	7	80.9	7	94	4	975	41	43	0	14	1.50
30134664--30134701	13	2.9	13	88	7	51	18	0	7	73	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144