genome.fa.s7.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  44  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10172204--10172374	62	2.8	61	80	1	198	26	18	15	39	1.91
10171687--10172606	340	2.7	337	80	3	1047	28	18	15	37	1.91
10172328--10172823	215	2.3	216	82	4	608	30	18	13	37	1.90
10172776--10172931	62	2.5	62	90	0	249	25	18	16	39	1.92
10171672--10173824	895	2.4	892	92	0	3606	28	18	15	37	1.91
10173130--10173264	62	2.2	61	84	4	171	25	19	17	38	1.92
10172543--10173500	340	2.8	340	83	2	1133	28	18	15	38	1.91
10173655--10174082	62	6.9	62	92	1	660	26	19	15	38	1.91
10174234--10174421	62	3.0	60	79	3	189	26	19	15	38	1.92
10174751--10174935	62	3.0	62	84	2	230	25	18	17	38	1.92
10174872--10175344	216	2.2	215	82	4	558	28	18	16	37	1.92
10175334--10175468	62	2.2	61	84	4	171	25	19	16	38	1.92
10175427--10175921	215	2.3	215	82	4	579	29	18	13	37	1.90
10175867--10176285	62	6.8	62	91	2	664	25	19	15	39	1.91
10174670--10177949	554	5.9	556	81	6	3656	27	18	15	38	1.91
10175867--10176285	184	2.3	186	91	2	666	25	19	15	39	1.91
10176438--10176625	62	3.0	60	81	3	207	26	18	15	38	1.91
10176562--10177039	215	2.2	214	81	4	561	30	17	14	38	1.89
10177002--10177162	62	2.6	62	93	0	277	25	16	16	40	1.89
10177116--10177610	215	2.3	216	84	4	635	29	18	13	38	1.89
10177549--10177728	62	2.9	62	90	0	288	25	20	16	38	1.93
10177331--10178280	339	2.8	336	85	4	1228	27	18	15	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10176777--10178620	893	2.1	894	91	1	2959	28	18	15	38	1.91
10177910--10178073	62	2.6	61	83	7	213	25	18	17	39	1.92
10178007--10178503	215	2.3	215	83	3	635	29	18	14	37	1.91
10178437--10178689	62	4.1	62	89	1	382	26	20	15	37	1.92
10177885--10179244	617	2.2	616	91	0	2168	28	18	15	37	1.91
10179059--10179244	62	3.0	62	89	3	277	27	18	16	37	1.92
10179399--10179584	62	3.0	62	89	1	275	26	19	15	38	1.91
10178896--10180821	340	5.7	339	84	4	2353	28	18	14	38	1.90
10179736--10179923	62	3.0	62	84	3	220	26	19	17	37	1.93
10180083--10180266	62	3.0	61	91	1	280	27	19	16	36	1.93
10178841--10180821	682	2.9	679	88	3	2736	28	18	14	38	1.90
10180418--10180606	62	3.0	61	77	6	193	28	20	13	37	1.91
10180542--10181023	215	2.2	215	83	4	634	29	17	14	39	1.89
10180975--10181160	62	3.0	62	90	0	282	25	17	17	39	1.91
10181273--10181396	62	2.0	63	92	4	207	27	16	17	38	1.91
10181555--10181740	62	3.0	62	89	0	264	25	18	16	39	1.91
10180758--10181975	580	2.1	579	97	0	2296	28	17	15	39	1.89
10181853--10182037	62	3.0	62	90	1	273	27	16	17	37	1.92
10181490--10182066	301	1.9	302	88	2	883	27	16	15	40	1.89
10182195--10182445	62	4.0	62	84	3	317	29	17	13	39	1.88
10182381--10182876	215	2.3	214	83	5	606	30	17	13	38	1.88
10182815--10183000	62	3.0	61	85	3	255	25	20	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10183171--10183339	61	2.7	62	82	2	216	25	18	17	37	1.93
10183493--10183678	62	3.0	62	94	0	318	26	19	17	36	1.94
10182597--10183795	340	3.5	340	83	3	1556	27	18	15	38	1.91
10183871--10184242	62	6.0	61	83	5	426	26	20	15	37	1.92
10183885--10184242	186	1.9	186	87	1	520	26	20	15	37	1.92
10184555--10185103	62	9.0	62	73	15	401	27	17	15	40	1.89
10185257--10185383	62	2.0	62	89	0	191	30	17	14	37	1.89
10184977--10185594	280	2.2	278	87	3	886	29	17	14	38	1.90
10185319--10185816	215	2.3	217	81	4	587	31	17	13	38	1.88
10185755--10186002	62	4.0	62	86	2	336	26	19	16	37	1.93
10186154--10186342	62	3.0	62	89	0	261	28	16	14	40	1.88
10185535--10186342	402	2.0	403	86	2	1113	27	17	15	38	1.90
10186493--10186619	62	2.0	62	83	0	155	29	16	14	39	1.89
10186216--10187108	278	3.2	275	87	2	1297	28	17	14	39	1.88
10186771--10186897	62	2.0	62	90	0	200	29	18	15	37	1.92
10186833--10187329	215	2.3	216	82	5	621	30	17	13	38	1.88
10187268--10187515	62	4.0	62	87	0	352	26	19	16	38	1.92
10188161--10188406	62	4.0	62	93	2	406	27	18	15	37	1.92
10188161--10188406	122	2.0	124	93	1	424	27	18	15	37	1.92
10188558--10188746	62	3.0	62	88	0	270	26	17	15	39	1.91
10188897--10189023	62	2.0	62	89	0	191	27	18	16	37	1.92
10188620--10190068	278	5.2	278	91	1	2221	28	17	14	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10189175--10189301	62	2.0	62	89	3	193	29	18	16	36	1.92
10189453--10189579	62	2.0	62	84	3	166	29	16	15	38	1.90
10189731--10189857	62	2.0	62	89	0	191	29	18	14	37	1.91
10189793--10190289	215	2.3	216	82	5	621	30	17	14	37	1.89
10188342--10190351	834	2.4	829	74	11	2114	28	17	14	39	1.89
10190228--10190351	62	2.0	62	93	0	212	26	20	16	36	1.94
10189237--10191120	771	2.4	770	88	2	2698	28	17	14	39	1.89
10189515--10190567	494	2.1	493	84	4	1406	28	17	14	39	1.89
10190007--10190843	278	3.0	275	83	3	905	27	16	14	40	1.89
10190594--10191059	215	2.2	214	80	6	523	29	17	13	39	1.88
10190998--10191244	62	4.0	62	94	1	399	27	19	15	38	1.91
10191396--10191584	62	3.0	61	85	3	243	28	17	15	38	1.91
10191057--10192542	340	4.4	340	88	1	2120	27	17	15	39	1.90
10191738--10191925	62	3.0	62	83	0	234	29	17	15	37	1.91
10192077--10192265	62	3.0	62	88	0	261	26	18	15	39	1.90
10192416--10192542	62	2.0	62	89	0	191	29	18	14	37	1.91
10192139--10193588	278	5.2	277	93	1	2255	28	17	14	39	1.89
10192694--10192820	62	2.0	62	90	0	200	29	18	15	37	1.92
10192972--10193098	62	2.0	62	89	0	191	29	18	14	37	1.91
10193250--10193376	62	2.0	62	87	0	182	29	17	14	38	1.90
10193312--10193808	216	2.3	216	83	5	630	30	16	14	38	1.89
10193748--10193990	62	4.0	62	86	1	337	25	19	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10193748--10193990	123	2.0	122	86	3	335	25	19	16	38	1.93
10194414--10194571	62	2.6	60	81	7	176	25	19	17	36	1.94
10194732--10194915	60	3.0	59	84	10	244	25	19	17	37	1.94
10194725--10194894	60	2.7	63	87	8	249	25	18	18	37	1.94
10195106--10195477	62	6.0	61	83	5	426	26	20	15	37	1.92
10195120--10195477	186	1.9	186	87	1	520	26	20	15	37	1.92
10195790--10196336	62	9.0	62	72	15	383	27	17	15	39	1.89
10196088--10196332	61	4.0	61	90	4	368	28	17	15	38	1.91
10196490--10196616	62	2.0	62	89	0	191	30	17	14	37	1.89
10196987--10197232	61	4.0	61	85	2	314	26	19	16	36	1.93
10197383--10197572	63	3.0	63	89	0	274	28	16	14	40	1.88
10197078--10197846	337	2.3	339	85	3	1043	27	18	14	39	1.90
10197720--10197846	62	2.0	62	83	0	155	29	16	14	39	1.89
10197998--10198122	60	2.0	62	89	3	191	29	18	16	36	1.92
10197445--10198333	276	3.2	272	87	2	1210	29	17	14	39	1.89
10198060--10198552	214	2.3	214	82	5	586	31	17	13	37	1.88
10198492--10198738	62	4.0	62	87	0	343	26	19	16	38	1.92
10197720--10199907	892	2.5	890	88	2	3311	28	17	14	39	1.89
10198612--10199220	277	2.2	277	82	5	730	26	17	14	41	1.88
10199384--10199629	62	4.0	62	93	2	406	27	18	15	37	1.92
10199384--10199629	122	2.0	124	93	1	424	27	18	15	37	1.92
10199781--10199969	62	3.0	62	88	0	270	26	17	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10199443--10200245	338	2.4	339	88	2	1168	27	18	15	39	1.90
10200119--10200245	62	2.0	62	89	0	191	27	18	16	37	1.92
10199843--10201290	278	5.2	278	91	2	2173	28	17	14	39	1.89
10200397--10200523	62	2.0	62	89	3	193	29	18	16	36	1.92
10200675--10200801	62	2.0	62	84	3	166	29	16	15	38	1.90
10200952--10201077	62	2.0	61	87	1	180	29	18	15	37	1.91
10199843--10201290	554	2.6	552	90	3	2291	28	17	14	39	1.89
10201449--10201573	62	2.0	63	92	1	207	27	20	16	36	1.94
10200737--10201789	493	2.1	491	84	5	1363	28	17	14	39	1.89
10201231--10202060	279	3.0	275	82	4	904	27	16	15	40	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144