genome.fa.s7.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  142  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37685446--37685479	17	2.1	17	88	5	52	47	0	5	47	1.26
37687268--37687302	15	2.2	16	85	15	54	54	0	0	45	0.99
37687273--37687302	15	2.0	15	100	0	60	53	0	0	46	1.00
37688885--37688909	4	6.2	4	100	0	50	24	0	0	76	0.80
37690015--37690048	16	2.1	16	94	0	59	44	5	5	44	1.52
37691032--37691498	233	2.0	233	100	0	934	30	9	14	44	1.77
37706756--37706953	63	3.1	63	96	0	369	39	15	29	16	1.89
37710785--37710961	92	1.9	94	83	6	236	35	5	22	36	1.78
37711125--37711190	31	2.1	31	83	5	80	24	1	16	57	1.48
37711147--37711206	16	3.8	16	78	10	61	28	0	15	56	1.39
37711169--37711213	16	2.9	16	90	3	65	33	0	8	57	1.30
37713006--37713042	14	2.6	14	95	4	65	37	2	5	54	1.38
37713066--37713113	24	2.0	24	91	0	78	62	8	0	29	1.24
37713332--37713421	31	2.9	30	77	8	101	37	4	10	47	1.57
37714192--37714256	31	2.1	31	83	11	80	23	9	7	60	1.53
37716202--37716243	21	2.0	21	81	9	50	19	2	7	71	1.20
37717116--37717161	22	2.1	22	100	0	92	23	41	8	26	1.83
37728409--37728434	6	4.3	6	100	0	52	34	19	30	15	1.93
37729514--37729555	22	1.9	22	85	9	59	33	2	9	54	1.46
37736281--37736352	24	3.0	24	93	0	117	11	58	8	22	1.59
37736301--37736346	15	3.5	15	67	32	50	10	60	6	21	1.52
37736415--37736448	6	5.7	6	96	0	59	17	70	0	11	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37738031--37738076	24	1.9	24	86	0	65	26	56	4	13	1.55
37738109--37738317	30	7.2	30	75	12	134	21	59	9	9	1.57
37738139--37738468	24	12.5	24	69	20	164	22	58	8	10	1.57
37738038--37738199	72	2.2	72	83	4	211	25	56	8	9	1.59
37738103--37738413	84	3.8	84	78	7	286	21	58	9	10	1.58
37738139--37738467	27	12.4	26	68	16	78	22	58	8	10	1.57
37747608--37747650	20	2.0	22	86	8	63	32	0	2	65	1.06
37766308--37766350	15	2.9	15	82	10	61	37	6	6	48	1.57
37768469--37768507	15	2.6	14	88	8	51	53	2	0	43	1.14
37792647--37792690	23	1.9	23	81	9	54	47	11	0	40	1.39
37793335--37793361	7	3.9	7	100	0	54	85	0	14	0	0.61
37797289--37797331	23	2.0	21	86	9	59	48	9	0	41	1.35
37799328--37799371	18	2.5	17	78	10	52	36	0	4	59	1.18
37802888--37802946	4	14.8	4	92	0	55	49	23	10	16	1.77
37805052--37805093	21	2.0	21	81	9	50	50	0	0	50	1.00
37809870--37809949	29	2.6	30	80	5	81	47	13	7	31	1.71
37814253--37814305	24	2.3	22	78	15	54	49	15	9	26	1.74
37820902--37820937	18	2.0	18	89	10	56	8	5	8	77	1.11
37822140--37822166	5	5.4	5	100	0	54	0	62	37	0	0.95
37823916--37823964	22	2.2	22	82	7	55	30	0	2	67	1.02
37833964--37834638	127	5.3	128	81	3	765	27	9	15	47	1.76
37834544--37834721	92	1.9	93	87	3	261	30	11	12	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37834807--37834853	16	2.9	16	80	0	58	44	4	4	46	1.42
37835552--37835613	32	2.0	31	87	9	90	38	9	25	25	1.86
37836202--37836240	2	19.5	2	100	0	78	51	0	0	48	1.00
37836240--37837078	199	4.2	198	79	6	863	28	18	21	30	1.97
37836939--37837246	168	1.8	167	87	0	463	28	19	21	30	1.98
37843299--37843328	15	1.9	16	93	6	53	40	0	6	53	1.27
37844739--37844798	32	1.9	32	86	3	86	36	10	10	43	1.72
37845816--37845857	2	21.0	2	100	0	84	50	0	0	50	1.00
37846348--37846374	13	2.1	13	100	0	54	51	7	0	40	1.30
37847177--37847236	31	1.9	31	89	0	93	38	8	6	46	1.60
37852868--37852931	28	2.2	31	78	15	75	45	3	7	43	1.48
37853958--37854000	3	14.3	3	100	0	86	67	0	0	32	0.91
37854150--37854501	151	2.3	148	80	9	376	41	17	9	31	1.82
37856670--37856727	22	2.6	22	94	0	98	48	0	1	50	1.11
37857593--37857712	58	2.1	58	89	6	181	48	17	0	34	1.48
37858011--37858086	25	3.0	27	70	18	72	19	6	9	64	1.45
37858000--37858074	25	2.9	25	70	18	64	21	6	8	64	1.44
37860700--37860733	17	1.9	17	88	5	50	67	5	5	20	1.33
37864100--37864196	23	4.2	23	70	11	72	65	17	7	9	1.43
37864100--37864217	45	2.5	47	80	4	123	64	20	7	7	1.44
37864159--37864262	54	1.9	54	88	0	154	66	20	4	8	1.37
37864208--37864258	20	2.4	22	83	6	70	70	19	0	9	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37864239--37864292	22	2.5	22	82	8	67	68	20	5	5	1.30
37864253--37864309	12	5.1	11	75	10	53	66	19	7	7	1.39
37867069--37867113	17	2.6	17	83	16	58	55	4	0	40	1.20
37874997--37875053	22	2.5	23	81	16	66	43	5	1	49	1.35
37875831--37875860	12	2.5	12	100	0	60	6	13	53	26	1.64
37877810--37877860	17	3.1	17	75	11	61	43	7	0	49	1.32
37879257--37879353	41	2.5	38	75	6	97	30	27	18	22	1.97
37879456--37879494	6	6.5	6	87	0	51	23	30	0	46	1.53
37885019--37885048	12	2.5	12	100	0	60	6	13	53	26	1.64
37892121--37892150	12	2.5	12	94	0	51	10	13	53	23	1.69
37894270--37894316	12	3.9	12	77	5	51	46	4	2	46	1.34
37895428--37895481	2	27.0	2	100	0	108	50	0	50	0	1.00
37896739--37896771	16	2.1	16	100	0	66	12	45	12	30	1.78
37900786--37900811	8	3.2	8	100	0	52	34	0	15	50	1.45
37906650--37907722	591	1.8	573	84	7	1460	43	9	7	39	1.65
37911072--37911130	25	2.3	25	82	5	73	45	3	1	49	1.28
37911068--37911140	25	2.8	24	76	15	67	46	4	1	47	1.30
37911180--37911215	17	2.1	17	94	0	63	33	0	8	58	1.28
37911418--37911442	2	12.5	2	100	0	50	52	0	0	48	1.00
37920502--37920555	17	3.2	17	76	2	56	37	0	0	62	0.95
37921751--37921795	18	2.3	20	81	14	67	44	4	2	48	1.35
37921758--37921797	18	2.2	18	95	0	71	42	5	2	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37921824--37921887	23	2.7	24	83	11	69	67	0	4	28	1.11
37922263--37922324	27	2.3	27	74	0	70	46	3	1	48	1.28
37925726--37925756	5	6.2	5	100	0	62	19	38	22	19	1.93
37938653--37938695	16	2.7	16	96	0	77	39	4	4	51	1.44
37939682--37939744	29	2.2	29	80	5	74	46	6	14	33	1.70
37947333--37947371	12	3.2	12	81	0	51	23	33	0	43	1.54
37947338--37947371	15	2.3	15	84	0	50	20	32	0	47	1.51
37949994--37950034	16	2.5	17	80	11	50	34	2	17	46	1.61
37965095--37965133	21	1.9	19	85	10	51	28	7	5	58	1.47
37967507--37967539	16	2.1	16	94	0	57	30	0	0	69	0.88
37973494--37973518	9	2.8	9	100	0	50	72	8	0	20	1.10
37978480--37978545	33	2.0	33	100	0	132	39	3	18	39	1.66
37982158--37982228	34	2.1	34	100	0	142	50	8	2	38	1.47
37998050--37998088	19	2.1	19	85	9	53	61	20	7	10	1.52
38001943--38001986	22	2.0	22	82	8	54	43	6	2	47	1.42
38012117--38012163	23	2.0	24	83	4	60	57	0	2	40	1.11
38013058--38013090	16	2.1	16	100	0	66	30	18	27	24	1.98
38036589--38036614	2	13.0	2	100	0	52	50	0	0	50	1.00
38042795--38042846	20	2.7	18	78	21	52	71	3	3	21	1.18
38043871--38043904	15	2.3	15	94	0	59	38	0	23	38	1.55
38044748--38044808	20	3.2	19	77	15	63	65	6	0	27	1.17
38044933--38045057	12	10.8	12	68	10	55	68	18	4	8	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38044919--38045012	22	4.3	21	75	9	73	70	15	3	10	1.28
38044925--38045036	55	2.1	53	86	3	152	68	16	4	9	1.33
38044994--38045068	23	3.2	23	73	1	69	70	14	5	9	1.31
38045698--38045741	19	2.4	19	85	11	56	29	4	2	63	1.26
38054717--38054781	30	2.2	30	94	0	112	58	15	4	21	1.55
38079387--38079446	30	2.0	30	93	0	102	16	11	25	46	1.81
38085871--38085934	30	2.2	30	83	13	80	34	1	1	62	1.14
38093520--38093558	16	2.5	16	83	4	53	30	5	0	64	1.15
38102459--38102485	14	1.9	14	100	0	54	37	3	7	51	1.48
38103182--38103252	31	2.3	31	80	0	79	45	12	5	36	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144