genome.fa.s7.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  115  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26687616--26687676	27	2.2	28	79	5	70	42	18	22	16	1.89
26688428--26688477	25	2.0	25	88	0	73	30	30	8	32	1.86
26690330--26690379	22	2.3	22	76	13	57	54	2	10	34	1.45
26690652--26690693	20	2.2	19	87	12	59	76	4	2	16	1.07
26693544--26693624	40	2.0	40	85	0	117	28	16	19	35	1.93
26698863--26698960	46	2.1	46	96	0	178	36	14	10	38	1.80
26700128--26700184	24	2.2	26	75	21	64	56	3	5	35	1.39
26700191--26700609	209	2.0	209	100	0	838	46	8	17	28	1.77
26702805--26702862	8	7.1	8	74	2	53	37	1	0	60	1.07
26702803--26702877	24	3.1	23	83	9	87	37	1	0	61	1.05
26702854--26702893	19	2.2	19	86	4	55	42	2	0	55	1.13
26706377--26706407	2	15.5	2	100	0	62	48	0	51	0	1.00
26717089--26717138	16	3.1	16	81	13	66	76	0	0	24	0.80
26719182--26719260	24	3.6	21	73	18	63	62	0	2	35	1.09
26719160--26719307	50	2.9	50	87	6	183	61	0	2	35	1.10
26719196--26719285	24	3.7	24	71	23	71	58	0	3	37	1.14
26719217--26719293	14	6.1	13	75	22	58	58	0	2	38	1.12
26719183--26719272	32	2.7	32	77	6	99	61	0	3	35	1.13
26719233--26719274	14	2.9	14	96	3	75	64	0	4	30	1.14
26719252--26719296	21	2.1	22	83	4	56	62	0	2	35	1.08
26719160--26719324	36	4.7	36	71	20	104	59	0	3	37	1.13
26719309--26719365	28	2.0	29	89	3	89	36	5	1	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26721224--26721281	27	2.1	27	90	6	91	20	15	34	29	1.94
26721236--26721288	27	2.0	27	84	0	70	22	13	33	30	1.92
26721385--26721440	27	2.1	27	86	6	78	16	33	12	37	1.86
26721782--26721874	28	3.3	28	71	4	80	49	24	0	25	1.51
26721956--26722003	15	3.1	17	69	30	52	50	0	6	43	1.27
26722066--26722121	28	2.0	28	86	6	78	44	8	0	46	1.34
26724429--26724650	122	1.8	122	85	5	315	47	5	20	26	1.71
26726022--26726082	26	2.3	26	85	0	77	21	14	37	26	1.92
26728242--26728316	27	2.8	27	70	0	69	20	22	26	30	1.98
26728377--26728406	9	3.4	9	95	4	53	30	0	0	70	0.88
26728377--26728415	19	2.1	18	85	4	51	33	0	0	66	0.92
26732297--26732341	19	2.4	19	85	3	56	55	0	0	44	0.99
26732483--26732507	8	3.1	8	100	0	50	52	0	24	24	1.48
26741646--26741762	60	2.0	60	86	5	166	37	3	26	32	1.73
26741742--26741784	21	2.0	22	86	4	61	46	2	11	39	1.53
26741778--26741864	30	2.9	28	82	12	102	34	1	19	44	1.58
26743821--26743924	6	18.0	6	73	18	87	55	0	0	42	1.12
26743805--26743924	17	7.3	17	82	11	124	53	1	0	44	1.16
26743821--26743924	11	9.0	11	72	16	77	55	0	0	42	1.12
26744189--26744725	92	5.9	91	87	1	655	29	16	17	35	1.93
26744189--26744953	183	4.4	182	81	7	692	30	16	17	34	1.93
26744646--26745407	76	10.1	76	88	4	1008	31	18	16	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26745118--26745392	38	7.2	39	65	20	168	32	18	17	31	1.95
26757364--26757459	30	3.2	30	72	20	92	36	3	28	32	1.73
26757359--26757475	60	2.0	60	91	1	191	35	3	29	32	1.74
26757506--26757577	30	2.4	30	88	0	99	44	1	12	41	1.51
26759541--26759633	6	15.8	6	73	16	79	56	1	1	40	1.13
26759530--26759621	17	5.7	16	85	11	116	56	1	1	41	1.13
26759541--26759633	11	7.9	11	72	15	71	56	1	1	40	1.13
26764819--26764867	2	24.5	2	100	0	98	48	0	0	51	1.00
26767377--26767514	12	11.3	12	75	14	70	7	3	18	70	1.26
26767389--26767528	43	3.2	43	89	5	194	9	2	17	70	1.27
26767356--26767515	33	4.8	31	72	14	108	7	4	18	70	1.28
26767409--26767528	22	5.5	22	74	12	88	10	2	18	69	1.28
26767356--26767515	55	2.9	54	77	11	173	7	4	18	70	1.28
26771397--26771494	6	17.0	6	73	12	89	40	1	3	55	1.22
26771397--26771494	17	5.4	17	76	19	99	40	1	3	55	1.22
26771408--26771480	23	3.2	23	82	3	94	41	0	4	54	1.19
26772315--26772353	15	2.5	15	87	8	51	48	0	2	48	1.15
26773458--26773595	58	2.4	58	80	7	154	34	23	6	35	1.81
26775619--26775643	13	1.9	13	100	0	50	48	4	0	48	1.20
26777251--26777299	25	2.0	25	84	4	64	34	12	8	44	1.71
26788790--26789258	49	9.6	48	72	4	355	37	18	26	18	1.94
26788790--26789277	98	5.0	98	90	0	697	37	18	25	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26789763--26789787	10	2.5	10	100	0	50	92	0	0	8	0.40
26793980--26794011	2	16.0	2	100	0	64	50	0	0	50	1.00
26796152--26796179	2	14.0	2	100	0	56	50	0	0	50	1.00
26815390--26815432	22	1.9	23	85	4	61	60	11	0	27	1.31
26824975--26825070	47	2.0	47	100	0	192	40	10	8	40	1.69
26826323--26826400	27	2.9	26	81	5	84	62	3	0	33	1.13
26826346--26826403	26	2.3	25	80	14	66	63	1	0	34	1.04
26833653--26833682	3	10.0	3	100	0	60	33	33	0	33	1.58
26843825--26843974	39	3.8	39	86	1	185	25	17	19	38	1.93
26847199--26847243	23	2.0	23	91	8	74	62	2	0	35	1.08
26847207--26847262	14	3.8	15	77	15	55	64	1	1	32	1.14
26847232--26847282	21	2.4	21	80	6	59	60	3	3	31	1.33
26856428--26856490	27	2.3	27	97	0	117	34	19	17	28	1.94
26857798--26857838	22	2.0	20	86	13	57	48	9	0	41	1.36
26865347--26865432	2	44.0	2	95	4	158	51	0	0	48	1.00
26867395--26867564	43	4.0	43	85	0	205	27	17	26	28	1.97
26872189--26872234	20	2.2	20	85	11	58	54	6	8	30	1.56
26876901--26876961	7	8.9	7	77	10	54	44	29	0	26	1.55
26880489--26880513	3	8.3	3	100	0	50	68	0	32	0	0.90
26883411--26883472	29	2.1	29	85	5	81	30	4	22	41	1.74
26884465--26884504	11	3.8	11	80	12	57	67	0	0	32	0.91
26884464--26884508	20	2.3	20	92	3	74	71	0	0	28	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26884535--26884617	36	2.2	37	82	16	93	56	3	1	38	1.24
26890756--26890780	13	1.9	13	100	0	50	28	0	0	72	0.86
26906709--26906744	18	1.9	19	88	5	56	44	0	2	52	1.15
26916080--26916104	2	12.5	2	100	0	50	52	48	0	0	1.00
26920940--26921023	43	2.0	42	83	4	107	45	5	2	46	1.40
26922778--26923158	29	13.2	29	76	11	300	36	25	3	33	1.75
26922778--26923158	58	6.6	57	78	9	346	36	25	3	33	1.75
26923545--26923724	99	1.8	99	85	2	254	29	19	14	36	1.91
26924263--26924305	21	2.0	21	82	8	52	65	25	4	4	1.32
26924838--26924896	17	3.5	17	97	0	109	30	28	11	28	1.92
26927131--26927184	25	2.1	25	83	10	65	57	0	3	38	1.17
26936182--26936226	22	2.0	22	87	12	65	71	8	0	20	1.12
26936997--26937094	31	3.2	30	70	7	81	23	15	13	47	1.80
26943511--26943550	3	13.3	3	89	0	62	0	37	0	62	0.95
26947164--26947233	35	2.0	35	100	0	140	42	2	14	40	1.60
26947241--26947271	8	3.9	8	100	0	62	22	0	12	64	1.27
26952900--26952952	23	2.3	23	96	0	97	37	18	5	37	1.75
26964198--26964246	24	2.1	24	88	3	73	36	8	0	55	1.30
26966018--26966059	12	3.5	12	75	12	50	40	14	14	30	1.85
26968412--26968443	3	10.7	3	93	0	55	62	0	0	37	0.95
26971918--26971968	19	2.7	19	77	14	61	35	5	1	56	1.35
26973982--26974014	2	17.0	2	87	6	50	0	51	3	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26978907--26978964	23	2.5	23	85	0	71	31	25	20	22	1.98
26985455--26985504	23	2.1	24	85	3	66	26	4	2	68	1.18
26985493--26985550	6	9.2	6	74	10	53	22	0	3	74	0.97
26989034--26989102	23	3.0	23	97	0	129	30	31	17	20	1.95
26995769--26995871	12	8.9	12	76	11	99	7	3	16	71	1.24
26995710--26995871	24	7.2	21	70	16	78	7	4	18	69	1.31
26995746--26995869	57	2.2	56	82	4	151	8	4	17	70	1.28
26995781--26995886	45	2.4	43	77	10	106	7	2	17	71	1.22
26998925--26998963	2	19.5	2	94	0	69	0	51	0	48	1.00
27000362--27000413	26	2.0	26	82	14	63	53	0	3	42	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144